Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47483 * 2 1 4 4 C 1.52999 * 109.47286 * 120.00486 * 2 1 3 5 5 H 1.08999 * 109.46679 * 290.61371 * 4 2 1 6 6 C 1.52994 * 109.47238 * 50.61474 * 4 2 1 7 7 C 1.52999 * 109.47299 * 59.99748 * 6 4 2 8 8 C 1.53004 * 109.46994 * 60.00059 * 7 6 4 9 9 H 1.09004 * 109.46643 * 60.00309 * 8 7 6 10 10 C 1.52998 * 109.47326 * 179.97438 * 8 7 6 11 11 C 1.52994 * 109.47364 * 300.00307 * 8 7 6 12 12 C 1.52998 * 109.47299 * 59.99493 * 11 8 7 13 13 H 1.09001 * 109.47193 * 60.00302 * 12 11 8 14 14 C 1.53004 * 109.47351 * 180.02562 * 12 11 8 15 15 N 1.46902 * 109.46819 * 290.38730 * 14 12 11 16 16 C 1.46900 * 110.99652 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46922 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00082 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99798 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47331 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47085 * 120.00509 * 21 19 17 24 24 H 1.48499 * 109.47379 * 240.00526 * 21 19 17 25 25 H 1.09004 * 109.47054 * 299.99721 * 1 2 3 26 26 H 1.08999 * 109.47289 * 59.99065 * 1 2 3 27 27 H 1.08997 * 109.47672 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47054 * 240.00279 * 2 1 3 29 29 H 1.08993 * 109.47316 * 222.87329 * 3 2 1 30 30 H 1.08997 * 109.46703 * 342.87141 * 3 2 1 31 31 H 1.09000 * 109.46785 * 102.86999 * 3 2 1 32 32 H 1.09004 * 109.47574 * 180.02562 * 6 4 2 33 33 H 1.09009 * 109.47331 * 300.00313 * 6 4 2 34 34 H 1.08998 * 109.47350 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47507 * 300.00297 * 7 6 4 36 36 H 1.09001 * 109.47193 * 60.00227 * 10 8 7 37 37 H 1.08999 * 109.47299 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47357 * 300.00429 * 10 8 7 39 39 H 1.09004 * 109.47243 * 299.99635 * 11 8 7 40 40 H 1.09000 * 109.47761 * 179.97438 * 11 8 7 41 41 H 1.09003 * 109.47066 * 170.39299 * 14 12 11 42 42 H 1.08993 * 109.47203 * 50.38971 * 14 12 11 43 43 H 1.00895 * 110.99976 * 303.95550 * 15 14 12 44 44 H 1.09001 * 109.47316 * 300.00210 * 16 15 14 45 45 H 1.08996 * 109.47067 * 60.00964 * 16 15 14 46 46 H 0.96996 * 119.99884 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.8200 -0.1199 2.1312 6 6 1.3471 -2.0798 1.3723 7 6 1.6558 -2.9239 0.1341 8 6 3.1676 -3.1308 0.0220 9 1 3.5310 -3.6448 0.9119 10 6 3.4764 -3.9755 -1.2158 11 6 3.8606 -1.7724 -0.1011 12 6 3.5518 -0.9283 1.1370 13 1 3.9151 -1.4421 2.0270 14 6 4.2443 0.4305 1.0137 15 7 5.6973 0.2525 1.1370 16 6 6.3968 1.5392 1.0226 17 6 7.8816 1.3170 1.1531 18 1 8.2671 0.3197 1.3053 19 6 8.7481 2.3869 1.0771 20 7 8.2787 3.6013 0.8912 21 14 10.5886 2.1114 1.2381 22 1 10.8569 0.6647 1.4389 23 1 11.2683 2.5734 0.0013 24 1 11.1038 2.8770 2.4016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 2.8712 1.5340 -0.6991 30 1 1.2353 2.1124 -0.3027 31 1 2.3770 1.7087 1.0019 32 1 1.7101 -2.5936 2.2625 33 1 0.2700 -1.9325 1.4521 34 1 1.1625 -3.8919 0.2220 35 1 1.2925 -2.4101 -0.7559 36 1 3.1130 -3.4620 -2.1060 37 1 4.5534 -4.1232 -1.2955 38 1 2.9828 -4.9432 -1.1277 39 1 3.4973 -1.2584 -0.9911 40 1 4.9377 -1.9197 -0.1805 41 1 3.8908 1.0916 1.8049 42 1 4.0131 0.8694 0.0432 43 1 5.9326 -0.2118 2.0013 44 1 6.1804 1.9854 0.0519 45 1 6.0584 2.2083 1.8137 46 1 8.8882 4.3539 0.8381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309700147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -51.461186 kcal Electronic energy + Delta-G solvation = -20062.104937 eV Core-core repulsion = 17370.373540 eV Total energy + Delta-G solvation = -2691.731396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16789 -37.04544 -35.96783 -34.69292 -32.32004 -31.95278 -28.74422 -28.05276 -27.05364 -25.56891 -23.43182 -23.17654 -21.94173 -21.32837 -19.02803 -18.54163 -17.03737 -16.55106 -16.26486 -15.86278 -15.49868 -15.11812 -14.89751 -14.64921 -14.38256 -14.05515 -13.76589 -13.55872 -13.46911 -13.04878 -12.93663 -12.77470 -12.69936 -12.65555 -12.57745 -12.39614 -12.11573 -11.90201 -11.84515 -11.64848 -11.44665 -11.35223 -11.06228 -10.77780 -10.72269 -10.65128 -10.58044 -9.03368 -8.23453 -6.34836 1.39788 1.40696 1.54800 2.39278 3.09607 3.58836 3.64578 3.82665 4.02952 4.14793 4.17837 4.23693 4.33744 4.49276 4.54692 4.62037 4.65566 4.71178 4.73997 4.84207 4.90358 4.92501 4.95937 4.99290 5.04210 5.08477 5.10394 5.14033 5.19109 5.23483 5.27323 5.30330 5.35798 5.42051 5.49737 5.52919 5.54493 5.61814 5.65271 5.72568 5.78502 6.02844 6.47836 6.75179 6.90525 7.36468 8.88505 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.004850 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.462518 B = 5771.788684 C = 6484.228425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.157 4.157 4 C -0.072 4.072 5 H 0.061 0.939 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.089 4.089 9 H 0.063 0.937 10 C -0.144 4.144 11 C -0.096 4.096 12 C -0.068 4.068 13 H 0.060 0.940 14 C 0.052 3.948 15 N -0.686 5.686 16 C 0.211 3.789 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.007 0.993 42 H 0.076 0.924 43 H 0.329 0.671 44 H -0.004 1.004 45 H -0.045 1.045 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 -12.873 -1.299 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.214 4.214 4 C -0.091 4.091 5 H 0.079 0.921 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.107 4.107 9 H 0.081 0.919 10 C -0.202 4.202 11 C -0.133 4.133 12 C -0.087 4.087 13 H 0.078 0.922 14 C -0.076 4.076 15 N -0.316 5.316 16 C 0.083 3.917 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.014 0.986 45 H -0.027 1.027 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.624 -12.854 -1.992 21.108 hybrid contribution 1.064 1.082 0.952 1.792 sum -15.560 -11.773 -1.039 19.539 Atomic orbital electron populations 1.21947 0.93983 1.02486 1.01636 1.21169 0.96468 0.94705 0.98332 1.22329 1.00324 0.97438 1.01298 1.21216 0.93200 0.97061 0.97623 0.92103 1.21602 1.00659 0.94273 0.98242 1.21594 0.94724 0.99983 0.98369 1.21118 0.96072 0.95044 0.98499 0.91902 1.21797 1.01089 0.99799 0.97465 1.21487 0.99722 0.95182 0.96914 1.21067 0.94851 0.94102 0.98674 0.92193 1.22700 0.87444 0.97141 1.00350 1.60578 1.06823 1.23263 1.40983 1.19151 0.93253 0.86087 0.93201 1.21588 0.92296 0.94041 1.49311 0.91830 1.25978 1.04589 0.94605 0.94613 1.70104 1.36863 0.99724 1.50872 0.85263 0.78414 0.78658 0.77822 1.18652 1.20315 1.20213 0.92778 0.92679 0.91083 0.90962 0.93882 0.92250 0.93288 0.92261 0.90174 0.91016 0.91588 0.92817 0.93594 0.91599 0.92675 0.93404 0.97473 0.90621 0.85488 0.98558 1.02720 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.21 71.98 0.59 -1.88 16 2 C -0.09 -1.96 1.75 -10.79 -0.02 -1.98 16 3 C -0.16 -4.16 7.95 71.98 0.57 -3.59 16 4 C -0.07 -1.64 1.89 -10.79 -0.02 -1.66 16 5 H 0.06 1.46 7.92 -2.39 -0.02 1.44 16 6 C -0.11 -1.99 4.90 30.59 0.15 -1.84 16 7 C -0.11 -1.91 4.78 30.60 0.15 -1.76 16 8 C -0.09 -1.90 2.72 -10.79 -0.03 -1.92 16 9 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 10 C -0.14 -2.81 9.19 71.98 0.66 -2.14 16 11 C -0.10 -2.64 4.12 30.59 0.13 -2.51 16 12 C -0.07 -1.94 2.09 -10.79 -0.02 -1.96 16 13 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16 14 C 0.05 1.93 3.47 86.30 0.30 2.23 16 15 N -0.69 -30.92 6.15 -517.92 -3.18 -34.10 16 16 C 0.21 11.82 5.44 85.56 0.47 12.28 16 17 C -0.53 -31.47 9.32 25.60 0.24 -31.23 16 18 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 19 C 0.00 0.01 5.46 84.66 0.46 0.47 16 20 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 21 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.03 5.87 -2.39 -0.01 1.02 16 28 H 0.07 1.68 4.87 -2.38 -0.01 1.66 16 29 H 0.04 1.30 6.23 -2.39 -0.01 1.29 16 30 H 0.06 1.38 7.68 -2.39 -0.02 1.37 16 31 H 0.05 1.43 5.53 -2.39 -0.01 1.41 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.20 6.31 -2.38 -0.02 1.19 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.15 6.26 -2.39 -0.01 1.13 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 1.56 6.23 -2.39 -0.01 1.54 16 40 H 0.05 1.58 7.90 -2.39 -0.02 1.56 16 41 H 0.01 0.28 6.94 -2.39 -0.02 0.26 16 42 H 0.08 2.91 4.63 -2.39 -0.01 2.89 16 43 H 0.33 14.22 8.70 -89.70 -0.78 13.44 16 44 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H -0.04 -2.71 8.14 -2.39 -0.02 -2.73 16 46 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.04 332.29 2.90 -61.14 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.15 Total: 20.80 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.62 Total: -37.50 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.90 Total: -91.69 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.04 2.90 -61.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309700147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.681 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds