Wall clock time and date at job start Mon Mar 30 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46836 * 2 1 4 4 C 1.53001 * 109.46671 * 119.99856 * 2 1 3 5 5 H 1.09001 * 109.47207 * 55.95281 * 4 2 1 6 6 C 1.52998 * 109.47237 * 295.94822 * 4 2 1 7 7 C 1.53001 * 109.47237 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46854 * 60.00180 * 7 6 4 9 9 H 1.09001 * 109.46986 * 60.00144 * 8 7 6 10 10 C 1.53003 * 109.47215 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47399 * 299.99958 * 8 7 6 12 12 C 1.53002 * 109.46854 * 175.95002 * 4 2 1 13 13 H 1.09001 * 109.46986 * 60.00144 * 12 4 2 14 14 C 1.52998 * 109.47052 * 299.99934 * 12 4 2 15 15 N 1.46907 * 109.47007 * 175.27809 * 14 12 4 16 16 C 1.46892 * 110.99925 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.47090 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99803 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47287 * 89.99643 * 21 19 17 23 23 H 1.48501 * 109.47372 * 210.00419 * 21 19 17 24 24 H 1.48511 * 109.47174 * 329.99828 * 21 19 17 25 25 H 1.08995 * 109.47343 * 306.03333 * 1 2 3 26 26 H 1.09004 * 109.46849 * 66.03212 * 1 2 3 27 27 H 1.09002 * 109.47377 * 186.02785 * 1 2 3 28 28 H 1.09001 * 109.47273 * 239.99456 * 2 1 3 29 29 H 1.08996 * 109.47207 * 299.99508 * 3 2 1 30 30 H 1.09002 * 109.47194 * 59.99980 * 3 2 1 31 31 H 1.09003 * 109.46548 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47397 * 300.00342 * 6 4 2 33 33 H 1.08999 * 109.46974 * 60.00665 * 6 4 2 34 34 H 1.09001 * 109.47207 * 300.00459 * 7 6 4 35 35 H 1.09000 * 109.47485 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.46957 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.46614 * 300.00039 * 10 8 7 38 38 H 1.09001 * 109.47027 * 60.00168 * 10 8 7 39 39 H 1.09005 * 109.46930 * 300.00484 * 11 8 7 40 40 H 1.08999 * 109.47321 * 179.97438 * 11 8 7 41 41 H 1.08993 * 109.47231 * 295.27857 * 14 12 4 42 42 H 1.08994 * 109.47078 * 55.28385 * 14 12 4 43 43 H 1.00898 * 110.99422 * 56.04953 * 15 14 12 44 44 H 1.09006 * 109.47656 * 300.00019 * 16 15 14 45 45 H 1.09001 * 109.47629 * 60.00407 * 16 15 14 46 46 H 0.96996 * 119.99566 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6186 -1.7258 1.2863 6 6 1.6148 0.0565 2.4964 7 6 2.1242 -0.6651 3.7457 8 6 3.6508 -0.7545 3.6962 9 1 4.0725 0.2499 3.6594 10 6 4.1602 -1.4767 4.9452 11 6 4.0760 -1.5322 2.4491 12 6 3.5666 -0.8101 1.1994 13 1 3.9880 0.1945 1.1624 14 6 3.9917 -1.5878 -0.0477 15 7 5.4567 -1.5764 -0.1561 16 6 5.9023 -2.3160 -1.3445 17 6 7.4071 -2.2830 -1.4216 18 1 7.9753 -1.7642 -0.6639 19 6 8.0581 -2.9144 -2.4602 20 7 7.3659 -3.5458 -3.3832 21 14 9.9231 -2.8729 -2.5562 22 1 10.4824 -4.0384 -1.8256 23 1 10.3470 -2.9302 -3.9783 24 1 10.4227 -1.6169 -1.9411 25 1 -0.3634 0.6045 0.8310 26 1 -0.3633 0.4175 -0.9391 27 1 -0.3634 -1.0220 0.1079 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 2.0362 1.0611 2.4594 33 1 0.5272 0.1197 2.5319 34 1 1.7024 -1.6695 3.7825 35 1 1.8217 -0.1108 4.6342 36 1 5.2478 -1.5399 4.9101 37 1 3.8572 -0.9229 5.8339 38 1 3.7384 -2.4811 4.9816 39 1 3.6541 -2.5367 2.4859 40 1 5.1636 -1.5955 2.4136 41 1 3.6410 -2.6169 0.0288 42 1 3.5583 -1.1211 -0.9322 43 1 5.8840 -1.9452 0.6802 44 1 5.5650 -3.3503 -1.2765 45 1 5.4822 -1.8547 -2.2383 46 1 7.8240 -3.9896 -4.1140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309700150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:12 Heat of formation + Delta-G solvation = -50.737296 kcal Electronic energy + Delta-G solvation = -19816.623685 eV Core-core repulsion = 17124.923679 eV Total energy + Delta-G solvation = -2691.700006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75996 -35.56898 -35.26443 -32.68116 -30.88381 -30.54082 -27.13301 -26.75846 -26.14674 -24.16281 -22.66719 -21.32240 -20.39738 -19.94305 -18.65934 -16.37406 -15.37230 -15.17927 -14.81939 -14.57908 -14.34711 -13.97167 -13.56632 -13.40351 -12.98563 -12.85327 -12.55980 -12.44542 -12.24457 -11.87708 -11.80876 -11.65183 -11.34821 -11.14360 -11.01809 -10.94774 -10.79919 -10.68721 -10.66421 -10.50198 -10.36618 -10.04058 -9.95726 -9.63995 -9.46445 -9.07531 -8.44820 -7.20246 -5.99958 -4.01664 3.33588 3.39466 3.44307 4.45619 4.69198 4.75592 4.78353 5.01201 5.02799 5.18780 5.29921 5.35876 5.39950 5.50716 5.56297 5.60469 5.64978 5.68269 5.70902 5.76003 5.79625 5.88610 5.91077 5.97268 6.02873 6.06592 6.10424 6.15204 6.22040 6.29221 6.30207 6.36235 6.43787 6.47253 6.48672 6.59225 6.72698 6.84886 7.32602 7.48241 7.83121 8.18232 8.47131 8.68939 9.08136 9.63174 11.11236 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.004914 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.900686 B = 5696.997154 C = 6619.099778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.074 4.074 5 H 0.064 0.936 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.090 4.090 9 H 0.068 0.932 10 C -0.147 4.147 11 C -0.110 4.110 12 C -0.079 4.079 13 H 0.079 0.921 14 C 0.062 3.938 15 N -0.690 5.690 16 C 0.194 3.806 17 C -0.512 4.512 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.013 0.987 42 H 0.066 0.934 43 H 0.326 0.674 44 H -0.016 1.016 45 H 0.026 0.974 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.156 6.639 12.967 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.093 4.093 5 H 0.083 0.917 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.109 4.109 9 H 0.086 0.914 10 C -0.204 4.204 11 C -0.148 4.148 12 C -0.098 4.098 13 H 0.097 0.903 14 C -0.068 4.068 15 N -0.321 5.321 16 C 0.067 3.933 17 C -0.551 4.551 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.002 0.998 45 H 0.044 0.956 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.109 7.146 12.470 19.453 hybrid contribution 0.821 -1.075 0.025 1.353 sum -12.289 6.071 12.494 18.546 Atomic orbital electron populations 1.21877 0.95913 1.01338 1.01218 1.21199 0.94952 0.96664 0.98652 1.21929 1.01962 0.95820 1.00968 1.21163 0.95542 0.98712 0.93864 0.91708 1.21663 0.99991 0.99430 0.94113 1.21594 0.95516 1.00427 0.97498 1.21120 0.95291 0.99625 0.94846 0.91372 1.21835 1.01134 1.00240 0.97235 1.21665 1.01100 0.98524 0.93484 1.21238 0.93844 1.00430 0.94300 0.90291 1.21990 0.90963 0.96882 0.96946 1.60709 1.03972 1.60268 1.07120 1.19532 0.95510 0.90537 0.87731 1.21205 0.91473 1.32852 1.09579 0.92031 1.24993 0.98608 0.95389 0.95623 1.69969 1.35440 1.35290 1.13138 0.86498 0.85389 0.78400 0.77115 1.20757 1.21258 1.19772 0.92864 0.93126 0.93015 0.90602 0.93328 0.92832 0.91784 0.91685 0.92293 0.92363 0.92642 0.92625 0.93200 0.92954 0.92591 0.91402 0.96850 0.91594 0.85654 0.99829 0.95568 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.77 37.16 0.33 -1.16 16 2 C -0.10 -1.14 2.47 -90.62 -0.22 -1.37 16 3 C -0.15 -1.73 8.47 37.16 0.31 -1.42 16 4 C -0.07 -0.88 1.50 -90.62 -0.14 -1.02 16 5 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.11 -1.19 4.48 -26.73 -0.12 -1.31 16 7 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 8 C -0.09 -1.01 2.72 -90.62 -0.25 -1.26 16 9 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 10 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 11 C -0.11 -1.47 4.25 -26.70 -0.11 -1.58 16 12 C -0.08 -1.13 1.67 -90.59 -0.15 -1.28 16 13 H 0.08 1.20 6.53 -51.93 -0.34 0.86 16 14 C 0.06 1.12 4.93 -3.82 -0.02 1.10 16 15 N -0.69 -15.09 6.49 -115.06 -0.75 -15.84 16 16 C 0.19 5.22 5.44 -4.98 -0.03 5.19 16 17 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 18 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 21 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.05 0.49 6.84 -51.93 -0.36 0.14 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.03 6.12 -51.93 -0.32 0.71 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.55 6.36 -51.93 -0.33 0.22 16 31 H 0.06 0.84 6.53 -51.93 -0.34 0.50 16 32 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 33 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.99 6.67 -51.93 -0.35 0.64 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 1.22 6.10 -51.93 -0.32 0.91 16 43 H 0.33 6.85 6.96 -39.29 -0.27 6.57 16 44 H -0.02 -0.46 8.14 -51.93 -0.42 -0.88 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -29.52 339.78 -9.28 -38.81 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.76 Total: 1.70 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.61 Total: -20.17 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.01 Total: -42.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.52 -9.28 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309700150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.932 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds