Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46836 * 2 1 4 4 C 1.53001 * 109.46671 * 119.99856 * 2 1 3 5 5 H 1.09001 * 109.47207 * 55.95281 * 4 2 1 6 6 C 1.52998 * 109.47237 * 295.94822 * 4 2 1 7 7 C 1.53001 * 109.47237 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46854 * 60.00180 * 7 6 4 9 9 H 1.09001 * 109.46986 * 60.00144 * 8 7 6 10 10 C 1.53003 * 109.47215 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47399 * 299.99958 * 8 7 6 12 12 C 1.53002 * 109.46854 * 175.95002 * 4 2 1 13 13 H 1.09001 * 109.46986 * 60.00144 * 12 4 2 14 14 C 1.52998 * 109.47052 * 299.99934 * 12 4 2 15 15 N 1.46907 * 109.47007 * 175.27809 * 14 12 4 16 16 C 1.46892 * 110.99925 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.47090 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99803 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47287 * 89.99643 * 21 19 17 23 23 H 1.48501 * 109.47372 * 210.00419 * 21 19 17 24 24 H 1.48511 * 109.47174 * 329.99828 * 21 19 17 25 25 H 1.08995 * 109.47343 * 306.03333 * 1 2 3 26 26 H 1.09004 * 109.46849 * 66.03212 * 1 2 3 27 27 H 1.09002 * 109.47377 * 186.02785 * 1 2 3 28 28 H 1.09001 * 109.47273 * 239.99456 * 2 1 3 29 29 H 1.08996 * 109.47207 * 299.99508 * 3 2 1 30 30 H 1.09002 * 109.47194 * 59.99980 * 3 2 1 31 31 H 1.09003 * 109.46548 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47397 * 300.00342 * 6 4 2 33 33 H 1.08999 * 109.46974 * 60.00665 * 6 4 2 34 34 H 1.09001 * 109.47207 * 300.00459 * 7 6 4 35 35 H 1.09000 * 109.47485 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.46957 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.46614 * 300.00039 * 10 8 7 38 38 H 1.09001 * 109.47027 * 60.00168 * 10 8 7 39 39 H 1.09005 * 109.46930 * 300.00484 * 11 8 7 40 40 H 1.08999 * 109.47321 * 179.97438 * 11 8 7 41 41 H 1.08993 * 109.47231 * 295.27857 * 14 12 4 42 42 H 1.08994 * 109.47078 * 55.28385 * 14 12 4 43 43 H 1.00898 * 110.99422 * 56.04953 * 15 14 12 44 44 H 1.09006 * 109.47656 * 300.00019 * 16 15 14 45 45 H 1.09001 * 109.47629 * 60.00407 * 16 15 14 46 46 H 0.96996 * 119.99566 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6186 -1.7258 1.2863 6 6 1.6148 0.0565 2.4964 7 6 2.1242 -0.6651 3.7457 8 6 3.6508 -0.7545 3.6962 9 1 4.0725 0.2499 3.6594 10 6 4.1602 -1.4767 4.9452 11 6 4.0760 -1.5322 2.4491 12 6 3.5666 -0.8101 1.1994 13 1 3.9880 0.1945 1.1624 14 6 3.9917 -1.5878 -0.0477 15 7 5.4567 -1.5764 -0.1561 16 6 5.9023 -2.3160 -1.3445 17 6 7.4071 -2.2830 -1.4216 18 1 7.9753 -1.7642 -0.6639 19 6 8.0581 -2.9144 -2.4602 20 7 7.3659 -3.5458 -3.3832 21 14 9.9231 -2.8729 -2.5562 22 1 10.4824 -4.0384 -1.8256 23 1 10.3470 -2.9302 -3.9783 24 1 10.4227 -1.6169 -1.9411 25 1 -0.3634 0.6045 0.8310 26 1 -0.3633 0.4175 -0.9391 27 1 -0.3634 -1.0220 0.1079 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 2.0362 1.0611 2.4594 33 1 0.5272 0.1197 2.5319 34 1 1.7024 -1.6695 3.7825 35 1 1.8217 -0.1108 4.6342 36 1 5.2478 -1.5399 4.9101 37 1 3.8572 -0.9229 5.8339 38 1 3.7384 -2.4811 4.9816 39 1 3.6541 -2.5367 2.4859 40 1 5.1636 -1.5955 2.4136 41 1 3.6410 -2.6169 0.0288 42 1 3.5583 -1.1211 -0.9322 43 1 5.8840 -1.9452 0.6802 44 1 5.5650 -3.3503 -1.2765 45 1 5.4822 -1.8547 -2.2383 46 1 7.8240 -3.9896 -4.1140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309700150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -67.095009 kcal Electronic energy + Delta-G solvation = -19817.333009 eV Core-core repulsion = 17124.923679 eV Total energy + Delta-G solvation = -2692.409330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81680 -37.02135 -36.49064 -34.71572 -32.27135 -31.54904 -28.67532 -28.01924 -27.11788 -25.69746 -23.91679 -23.04168 -21.67466 -20.88210 -19.69809 -18.54915 -16.89526 -16.46799 -16.24265 -15.85228 -15.58329 -15.17681 -14.82096 -14.67763 -14.35748 -14.09212 -13.78026 -13.56447 -13.46872 -13.27036 -13.08810 -12.89664 -12.72128 -12.66115 -12.46105 -12.16020 -12.05721 -11.96934 -11.87798 -11.79065 -11.49362 -11.40029 -11.27331 -11.09487 -10.67900 -10.62441 -10.53394 -9.11764 -8.24021 -6.35874 1.39853 1.42089 1.54003 2.39058 3.08984 3.54415 3.73822 3.78810 3.89117 4.07090 4.17269 4.26923 4.35915 4.47849 4.54707 4.57242 4.58076 4.68016 4.78239 4.83724 4.86047 4.89512 4.93148 4.98644 5.04374 5.07890 5.09471 5.12849 5.15760 5.19921 5.26370 5.27889 5.36159 5.38331 5.44419 5.48041 5.52919 5.57793 5.61723 5.66504 5.76701 6.01080 6.44753 6.72398 6.88278 7.35405 8.87866 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.004914 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.900686 B = 5696.997154 C = 6619.099778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.068 4.068 5 H 0.060 0.940 6 C -0.109 4.109 7 C -0.110 4.110 8 C -0.086 4.086 9 H 0.067 0.933 10 C -0.145 4.145 11 C -0.109 4.109 12 C -0.068 4.068 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.686 5.686 16 C 0.209 3.791 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.264 1.264 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.005 0.995 42 H 0.056 0.944 43 H 0.333 0.667 44 H -0.044 1.044 45 H -0.004 1.004 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 7.606 14.736 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.087 4.087 5 H 0.079 0.921 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.105 4.105 9 H 0.085 0.915 10 C -0.202 4.202 11 C -0.147 4.147 12 C -0.086 4.086 13 H 0.090 0.910 14 C -0.065 4.065 15 N -0.317 5.317 16 C 0.081 3.919 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.188 1.188 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.075 0.925 43 H 0.151 0.849 44 H -0.026 1.026 45 H 0.015 0.985 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.395 8.121 14.261 21.184 hybrid contribution 0.861 -1.389 -0.556 1.726 sum -12.534 6.732 13.704 19.754 Atomic orbital electron populations 1.21830 0.94084 1.01823 1.02101 1.21184 0.96490 0.96556 0.97446 1.21895 1.00595 0.95778 1.02053 1.21110 0.93360 0.99024 0.95216 0.92143 1.21635 1.01062 0.99064 0.92884 1.21585 0.94263 1.00779 0.98095 1.21084 0.96409 0.99113 0.93880 0.91487 1.21814 1.00719 1.00419 0.97296 1.21643 0.99954 0.98687 0.94373 1.21127 0.95788 0.99179 0.92554 0.90964 1.22067 0.88430 0.97048 0.98948 1.60606 1.06445 1.58939 1.05759 1.19186 0.95043 0.89062 0.88642 1.21544 0.92364 1.33407 1.10126 0.91751 1.25994 1.04331 0.94533 0.94914 1.70103 1.37846 1.35831 1.13761 0.85295 0.78371 0.78964 0.77435 1.19558 1.20593 1.18813 0.91234 0.92842 0.92898 0.93240 0.93001 0.90989 0.93834 0.91409 0.90550 0.92316 0.90725 0.93284 0.91531 0.92887 0.92996 0.93100 0.97662 0.92549 0.84925 1.02649 0.98545 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.77 71.98 0.63 -1.98 16 2 C -0.10 -2.28 2.47 -10.79 -0.03 -2.31 16 3 C -0.15 -3.25 8.47 71.98 0.61 -2.64 16 4 C -0.07 -1.57 1.50 -10.79 -0.02 -1.59 16 5 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.11 -1.96 4.48 30.59 0.14 -1.83 16 7 C -0.11 -1.91 5.20 30.60 0.16 -1.75 16 8 C -0.09 -1.78 2.72 -10.79 -0.03 -1.81 16 9 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 10 C -0.15 -2.68 9.19 71.98 0.66 -2.02 16 11 C -0.11 -2.88 4.25 30.61 0.13 -2.75 16 12 C -0.07 -1.94 1.67 -10.77 -0.02 -1.96 16 13 H 0.07 2.20 6.53 -2.39 -0.02 2.18 16 14 C 0.06 2.43 4.93 86.30 0.43 2.86 16 15 N -0.69 -31.26 6.49 -517.93 -3.36 -34.62 16 16 C 0.21 11.78 5.44 85.56 0.47 12.25 16 17 C -0.54 -31.69 9.32 25.60 0.24 -31.45 16 18 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 21 Si 0.98 45.16 29.54 68.60 2.03 47.19 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 25 H 0.07 1.07 6.84 -2.39 -0.02 1.05 16 26 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.40 6.12 -2.39 -0.01 1.39 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.33 6.36 -2.39 -0.02 1.31 16 31 H 0.04 1.14 6.53 -2.39 -0.02 1.12 16 32 H 0.07 1.22 6.36 -2.39 -0.02 1.20 16 33 H 0.08 1.16 6.67 -2.39 -0.02 1.15 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.05 1.50 6.67 -2.39 -0.02 1.49 16 41 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.06 2.23 6.10 -2.39 -0.01 2.21 16 43 H 0.33 14.43 6.96 -89.70 -0.62 13.81 16 44 H -0.04 -2.68 8.14 -2.38 -0.02 -2.70 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -64.40 339.78 3.07 -61.33 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.29 Total: 20.31 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.83 Total: -36.50 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -3.08 Total: -92.32 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.40 3.07 -61.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309700150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.766 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds