Wall clock time and date at job start Mon Mar 30 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47164 * 2 1 4 4 C 1.50704 * 109.46592 * 240.00588 * 2 1 3 5 5 H 1.07998 * 119.99953 * 274.99762 * 4 2 1 6 6 C 1.37881 * 120.00143 * 95.00290 * 4 2 1 7 7 N 1.31518 * 119.99627 * 184.91208 * 6 4 2 8 8 Si 1.86797 * 119.99850 * 4.90932 * 6 4 2 9 9 H 1.48506 * 109.47013 * 84.83444 * 8 6 4 10 10 H 1.48498 * 109.46957 * 204.83160 * 8 6 4 11 11 H 1.48503 * 109.47266 * 324.83377 * 8 6 4 12 12 N 1.46901 * 109.47303 * 120.00610 * 2 1 3 13 13 C 1.46892 * 110.99852 * 274.99785 * 12 2 1 14 14 H 1.08996 * 109.47302 * 34.99493 * 13 12 2 15 15 C 1.53008 * 109.47016 * 274.99787 * 13 12 2 16 16 C 1.53337 * 109.47263 * 155.00379 * 13 12 2 17 17 H 1.08685 * 108.89359 * 59.46084 * 16 13 12 18 18 C 1.52761 * 109.14343 * 180.02562 * 16 13 12 19 19 C 1.52238 * 110.75285 * 180.17668 * 18 16 13 20 20 H 1.11037 * 107.10665 * 189.57951 * 19 18 16 21 21 C 1.52830 * 110.62585 * 73.59397 * 19 18 16 22 22 C 1.51641 * 112.93194 * 307.68616 * 19 18 16 23 23 C 1.51634 * 115.44826 * 43.76753 * 22 19 18 24 24 H 1.11032 * 107.45922 * 198.36836 * 23 22 19 25 25 C 1.52823 * 111.60940 * 81.65528 * 23 22 19 26 26 C 1.52230 * 112.95077 * 316.26931 * 23 22 19 27 27 H 1.09002 * 109.46574 * 295.04525 * 1 2 3 28 28 H 1.09005 * 109.47216 * 55.04014 * 1 2 3 29 29 H 1.08994 * 109.47483 * 175.04467 * 1 2 3 30 30 H 0.96998 * 119.99083 * 179.97438 * 7 6 4 31 31 H 1.00902 * 110.99966 * 151.04172 * 12 2 1 32 32 H 1.08999 * 109.46843 * 60.00103 * 15 13 12 33 33 H 1.09005 * 109.46888 * 180.02562 * 15 13 12 34 34 H 1.08992 * 109.47246 * 300.00300 * 15 13 12 35 35 H 1.09329 * 109.19302 * 300.88729 * 18 16 13 36 36 H 1.09310 * 109.21853 * 59.41943 * 18 16 13 37 37 H 1.08997 * 109.47005 * 59.99671 * 21 19 18 38 38 H 1.08999 * 109.47127 * 179.97438 * 21 19 18 39 39 H 1.09002 * 109.46519 * 300.00208 * 21 19 18 40 40 H 1.10200 * 108.75033 * 166.28450 * 22 19 18 41 41 H 1.10234 * 108.69607 * 281.35930 * 22 19 18 42 42 H 1.09005 * 109.47299 * 60.00218 * 25 23 22 43 43 H 1.08999 * 109.47422 * 180.02562 * 25 23 22 44 44 H 1.09005 * 109.47374 * 300.00588 * 25 23 22 45 45 H 1.09311 * 109.57458 * 291.68032 * 26 23 22 46 46 H 1.09332 * 109.54301 * 172.74187 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1353 -1.7854 -1.2293 6 6 2.3601 0.0123 -2.3582 7 7 2.7058 -0.6130 -3.4624 8 14 2.3134 1.8792 -2.3174 9 1 3.5990 2.3950 -1.7821 10 1 2.1056 2.3993 -3.6927 11 1 1.1985 2.3276 -1.4449 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2223 2.3468 14 1 1.2578 0.9327 2.2907 15 6 3.4113 0.9806 2.3223 16 6 1.9770 -0.5818 3.6481 17 1 2.7978 -1.2930 3.6899 18 6 2.0425 0.3766 4.8359 19 6 1.9451 -0.3857 6.1501 20 1 1.8217 0.3677 6.9563 21 6 3.2482 -1.1302 6.4385 22 6 0.7472 -1.3138 6.2074 23 6 0.4947 -2.1298 4.9546 24 1 -0.5549 -2.4894 4.9972 25 6 1.3839 -3.3716 4.9030 26 6 0.6371 -1.3149 3.6767 27 1 -0.3632 0.4351 0.9311 28 1 -0.3634 0.5889 -0.8423 29 1 -0.3634 -1.0237 -0.0888 30 1 2.9361 -0.1046 -4.2557 31 1 2.9173 -1.1207 1.0285 32 1 3.4863 1.5522 1.3972 33 1 3.4581 1.6592 3.1740 34 1 4.2361 0.2703 2.3784 35 1 2.9863 0.9274 4.8017 36 1 1.2196 1.0927 4.7662 37 1 4.0681 -0.4151 6.5052 38 1 3.1581 -1.6682 7.3822 39 1 3.4479 -1.8379 5.6339 40 1 0.8726 -2.0018 7.0591 41 1 -0.1526 -0.7162 6.4275 42 1 1.1805 -4.0005 5.7698 43 1 1.1747 -3.9307 3.9910 44 1 2.4312 -3.0692 4.9113 45 1 -0.1739 -0.5846 3.6157 46 1 0.5724 -1.9788 2.8104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309731782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:54 Heat of formation + Delta-G solvation = -43.979351 kcal Electronic energy + Delta-G solvation = -20341.914508 eV Core-core repulsion = 17650.507549 eV Total energy + Delta-G solvation = -2691.406959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.44554 -36.52931 -33.44262 -32.92533 -31.56974 -29.39710 -27.36345 -27.24372 -25.81887 -25.13449 -23.11991 -21.00369 -20.15344 -19.53266 -17.77376 -17.00105 -15.80688 -14.93298 -14.49883 -14.20947 -13.95246 -13.87581 -13.66779 -13.20869 -13.11539 -12.61880 -12.52456 -12.38423 -12.27053 -12.01052 -11.82971 -11.38159 -11.12419 -11.04591 -10.96296 -10.85827 -10.75207 -10.65982 -10.59245 -10.44134 -10.20784 -9.83246 -9.80507 -9.59399 -9.50261 -8.96181 -8.57809 -7.28638 -6.10033 -4.09732 3.24750 3.34010 3.36234 4.38927 4.70217 4.75808 4.79134 5.07655 5.23251 5.28795 5.29859 5.34658 5.41062 5.55447 5.65508 5.69669 5.75305 5.79614 5.82368 5.87649 5.94384 6.00581 6.05838 6.12152 6.16678 6.20349 6.27725 6.33723 6.35721 6.42925 6.50563 6.51919 6.56182 6.67590 6.75500 6.84669 6.88080 6.94664 7.00826 7.46410 7.67185 8.06308 8.48478 8.71864 9.00395 9.55100 11.03268 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.005478 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.026496 B = 5110.225522 C = 5404.557872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.676 5.676 13 C 0.083 3.917 14 H 0.066 0.934 15 C -0.182 4.182 16 C -0.067 4.067 17 H 0.069 0.931 18 C -0.110 4.110 19 C -0.081 4.081 20 H 0.052 0.948 21 C -0.148 4.148 22 C -0.100 4.100 23 C -0.085 4.085 24 H 0.053 0.947 25 C -0.146 4.146 26 C -0.097 4.097 27 H 0.020 0.980 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.264 0.736 31 H 0.339 0.661 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 0.662 19.020 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 H 0.020 0.980 4 C -0.554 4.554 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.190 1.190 12 N -0.306 5.306 13 C -0.028 4.028 14 H 0.084 0.916 15 C -0.241 4.241 16 C -0.086 4.086 17 H 0.087 0.913 18 C -0.148 4.148 19 C -0.100 4.100 20 H 0.071 0.929 21 C -0.205 4.205 22 C -0.138 4.138 23 C -0.104 4.104 24 H 0.071 0.929 25 C -0.203 4.203 26 C -0.135 4.135 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.012 0.440 18.984 19.096 hybrid contribution 0.780 1.682 -0.379 1.893 sum -1.232 2.122 18.605 18.766 Atomic orbital electron populations 1.21842 0.98325 1.00533 0.97531 1.19531 0.92175 0.92537 0.88553 0.97964 1.21100 1.43302 0.95844 0.95109 0.90322 1.25022 0.94521 0.98002 0.95387 1.69908 1.46338 1.35693 1.01643 0.86917 0.78925 0.86860 0.77140 1.20417 1.21504 1.19049 1.60728 1.32864 1.32122 1.04913 1.21682 0.95610 0.93516 0.91987 0.91621 1.22564 0.99321 1.00893 1.01274 1.20936 0.98178 0.96699 0.92787 0.91308 1.21538 1.01558 0.97769 0.93939 1.20750 0.94852 0.96951 0.97435 0.92938 1.21927 0.96899 1.00466 1.01214 1.21192 0.97356 0.97848 0.97390 1.20812 0.99114 0.95426 0.95045 0.92866 1.21902 1.00462 0.96931 1.01041 1.21316 0.96496 0.99039 0.96629 0.96135 0.94375 0.93091 0.92660 0.84277 0.92952 0.92966 0.92764 0.92097 0.92562 0.93131 0.93265 0.91949 0.92881 0.93112 0.93699 0.92508 0.92337 0.93189 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.40 37.16 0.35 -2.37 16 2 C 0.18 4.20 2.07 -68.86 -0.14 4.05 16 3 H 0.00 0.06 4.26 -51.93 -0.22 -0.16 16 4 C -0.52 -14.21 8.84 -34.44 -0.30 -14.51 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 8 Si 0.87 21.58 26.99 -169.99 -4.59 16.99 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.36 6.82 56.52 0.39 -5.97 16 12 N -0.68 -13.38 5.28 -100.77 -0.53 -13.91 16 13 C 0.08 1.37 1.94 -67.54 -0.13 1.24 16 14 H 0.07 1.16 7.10 -51.93 -0.37 0.79 16 15 C -0.18 -2.87 8.79 37.16 0.33 -2.54 16 16 C -0.07 -0.92 1.80 -90.69 -0.16 -1.08 16 17 H 0.07 0.98 6.38 -52.11 -0.33 0.65 16 18 C -0.11 -1.31 4.27 -27.24 -0.12 -1.43 16 19 C -0.08 -0.86 2.62 -91.78 -0.24 -1.10 16 20 H 0.05 0.52 8.29 -50.76 -0.42 0.10 16 21 C -0.15 -1.46 8.89 37.07 0.33 -1.13 16 22 C -0.10 -1.06 4.78 -28.11 -0.13 -1.19 16 23 C -0.09 -1.00 2.62 -91.80 -0.24 -1.24 16 24 H 0.05 0.62 8.29 -50.76 -0.42 0.19 16 25 C -0.15 -1.65 8.92 37.07 0.33 -1.32 16 26 C -0.10 -1.35 4.46 -27.25 -0.12 -1.48 16 27 H 0.02 0.39 7.38 -51.93 -0.38 0.01 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.34 6.94 8.09 -39.29 -0.32 6.62 16 32 H 0.05 0.93 7.43 -51.93 -0.39 0.55 16 33 H 0.05 0.71 6.38 -51.93 -0.33 0.38 16 34 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.06 0.71 6.31 -51.74 -0.33 0.39 16 36 H 0.06 0.69 8.17 -51.75 -0.42 0.26 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.06 0.66 4.86 -51.93 -0.25 0.41 16 40 H 0.05 0.52 7.92 -51.24 -0.41 0.11 16 41 H 0.05 0.52 8.24 -51.22 -0.42 0.10 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.06 0.67 4.94 -51.93 -0.26 0.41 16 45 H 0.05 0.72 8.17 -51.75 -0.42 0.30 16 46 H 0.08 1.33 7.51 -51.74 -0.39 0.94 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -28.17 335.04 -8.26 -36.42 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.60 Total: 4.02 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -0.36 Total: -22.12 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.24 Total: -40.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.59 Total: 16.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.17 -8.26 -36.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309731782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.555 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds