Wall clock time and date at job start Mon Mar 30 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47164 * 2 1 4 4 C 1.50704 * 109.46592 * 240.00588 * 2 1 3 5 5 H 1.07998 * 119.99953 * 274.99762 * 4 2 1 6 6 C 1.37881 * 120.00143 * 95.00290 * 4 2 1 7 7 N 1.31518 * 119.99627 * 184.91208 * 6 4 2 8 8 Si 1.86797 * 119.99850 * 4.90932 * 6 4 2 9 9 H 1.48506 * 109.47013 * 84.83444 * 8 6 4 10 10 H 1.48498 * 109.46957 * 204.83160 * 8 6 4 11 11 H 1.48503 * 109.47266 * 324.83377 * 8 6 4 12 12 N 1.46901 * 109.47303 * 120.00610 * 2 1 3 13 13 C 1.46892 * 110.99852 * 274.99785 * 12 2 1 14 14 H 1.08996 * 109.47302 * 34.99493 * 13 12 2 15 15 C 1.53008 * 109.47016 * 274.99787 * 13 12 2 16 16 C 1.53337 * 109.47263 * 155.00379 * 13 12 2 17 17 H 1.08685 * 108.89359 * 59.46084 * 16 13 12 18 18 C 1.52761 * 109.14343 * 180.02562 * 16 13 12 19 19 C 1.52238 * 110.75285 * 180.17668 * 18 16 13 20 20 H 1.11037 * 107.10665 * 189.57951 * 19 18 16 21 21 C 1.52830 * 110.62585 * 73.59397 * 19 18 16 22 22 C 1.51641 * 112.93194 * 307.68616 * 19 18 16 23 23 C 1.51634 * 115.44826 * 43.76753 * 22 19 18 24 24 H 1.11032 * 107.45922 * 198.36836 * 23 22 19 25 25 C 1.52823 * 111.60940 * 81.65528 * 23 22 19 26 26 C 1.52230 * 112.95077 * 316.26931 * 23 22 19 27 27 H 1.09002 * 109.46574 * 295.04525 * 1 2 3 28 28 H 1.09005 * 109.47216 * 55.04014 * 1 2 3 29 29 H 1.08994 * 109.47483 * 175.04467 * 1 2 3 30 30 H 0.96998 * 119.99083 * 179.97438 * 7 6 4 31 31 H 1.00902 * 110.99966 * 151.04172 * 12 2 1 32 32 H 1.08999 * 109.46843 * 60.00103 * 15 13 12 33 33 H 1.09005 * 109.46888 * 180.02562 * 15 13 12 34 34 H 1.08992 * 109.47246 * 300.00300 * 15 13 12 35 35 H 1.09329 * 109.19302 * 300.88729 * 18 16 13 36 36 H 1.09310 * 109.21853 * 59.41943 * 18 16 13 37 37 H 1.08997 * 109.47005 * 59.99671 * 21 19 18 38 38 H 1.08999 * 109.47127 * 179.97438 * 21 19 18 39 39 H 1.09002 * 109.46519 * 300.00208 * 21 19 18 40 40 H 1.10200 * 108.75033 * 166.28450 * 22 19 18 41 41 H 1.10234 * 108.69607 * 281.35930 * 22 19 18 42 42 H 1.09005 * 109.47299 * 60.00218 * 25 23 22 43 43 H 1.08999 * 109.47422 * 180.02562 * 25 23 22 44 44 H 1.09005 * 109.47374 * 300.00588 * 25 23 22 45 45 H 1.09311 * 109.57458 * 291.68032 * 26 23 22 46 46 H 1.09332 * 109.54301 * 172.74187 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1353 -1.7854 -1.2293 6 6 2.3601 0.0123 -2.3582 7 7 2.7058 -0.6130 -3.4624 8 14 2.3134 1.8792 -2.3174 9 1 3.5990 2.3950 -1.7821 10 1 2.1056 2.3993 -3.6927 11 1 1.1985 2.3276 -1.4449 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2223 2.3468 14 1 1.2578 0.9327 2.2907 15 6 3.4113 0.9806 2.3223 16 6 1.9770 -0.5818 3.6481 17 1 2.7978 -1.2930 3.6899 18 6 2.0425 0.3766 4.8359 19 6 1.9451 -0.3857 6.1501 20 1 1.8217 0.3677 6.9563 21 6 3.2482 -1.1302 6.4385 22 6 0.7472 -1.3138 6.2074 23 6 0.4947 -2.1298 4.9546 24 1 -0.5549 -2.4894 4.9972 25 6 1.3839 -3.3716 4.9030 26 6 0.6371 -1.3149 3.6767 27 1 -0.3632 0.4351 0.9311 28 1 -0.3634 0.5889 -0.8423 29 1 -0.3634 -1.0237 -0.0888 30 1 2.9361 -0.1046 -4.2557 31 1 2.9173 -1.1207 1.0285 32 1 3.4863 1.5522 1.3972 33 1 3.4581 1.6592 3.1740 34 1 4.2361 0.2703 2.3784 35 1 2.9863 0.9274 4.8017 36 1 1.2196 1.0927 4.7662 37 1 4.0681 -0.4151 6.5052 38 1 3.1581 -1.6682 7.3822 39 1 3.4479 -1.8379 5.6339 40 1 0.8726 -2.0018 7.0591 41 1 -0.1526 -0.7162 6.4275 42 1 1.1805 -4.0005 5.7698 43 1 1.1747 -3.9307 3.9910 44 1 2.4312 -3.0692 4.9113 45 1 -0.1739 -0.5846 3.6157 46 1 0.5724 -1.9788 2.8104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309731782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:54 Heat of formation + Delta-G solvation = -59.494345 kcal Electronic energy + Delta-G solvation = -20342.587289 eV Core-core repulsion = 17650.507549 eV Total energy + Delta-G solvation = -2692.079740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50549 -38.01460 -35.17084 -33.88277 -33.37466 -30.74341 -28.83280 -28.06795 -27.31124 -26.71150 -24.33925 -22.00802 -21.58757 -21.14736 -19.04754 -18.75810 -17.11042 -16.52126 -15.94784 -15.35570 -15.12596 -15.04554 -14.79464 -14.66008 -14.50134 -14.18263 -13.89969 -13.75775 -13.48234 -13.18071 -12.96486 -12.81713 -12.68959 -12.60850 -12.35599 -12.11063 -12.07140 -11.90425 -11.81397 -11.73663 -11.53594 -11.47399 -11.05764 -10.90500 -10.79024 -10.59613 -10.49289 -8.91267 -8.31306 -6.35350 1.29083 1.31627 1.41903 2.30575 3.03006 3.56064 3.78766 3.86598 3.98820 4.16467 4.36543 4.38975 4.44370 4.46609 4.52682 4.55579 4.60400 4.73306 4.78283 4.85238 4.89341 4.92677 4.96099 4.97892 5.02870 5.10178 5.15351 5.17661 5.21480 5.23745 5.26122 5.29982 5.35856 5.42543 5.53521 5.55465 5.62720 5.67289 5.72039 5.76935 5.83312 6.11601 6.61085 6.74562 6.93953 7.34346 8.85678 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.005478 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.026496 B = 5110.225522 C = 5404.557872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.186 3.814 3 H 0.001 0.999 4 C -0.515 4.515 5 H 0.036 0.964 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.937 3.063 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.250 1.250 12 N -0.675 5.675 13 C 0.082 3.918 14 H 0.060 0.940 15 C -0.177 4.177 16 C -0.057 4.057 17 H 0.065 0.935 18 C -0.106 4.106 19 C -0.080 4.080 20 H 0.067 0.933 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.082 4.082 24 H 0.054 0.946 25 C -0.144 4.144 26 C -0.094 4.094 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.333 0.667 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 2.254 21.784 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.055 0.945 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.762 3.238 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.174 1.174 12 N -0.305 5.305 13 C -0.028 4.028 14 H 0.078 0.922 15 C -0.236 4.236 16 C -0.076 4.076 17 H 0.083 0.917 18 C -0.144 4.144 19 C -0.099 4.099 20 H 0.085 0.915 21 C -0.204 4.204 22 C -0.137 4.137 23 C -0.101 4.101 24 H 0.073 0.927 25 C -0.202 4.202 26 C -0.131 4.131 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.197 2.030 21.778 21.982 hybrid contribution 0.831 1.078 -1.212 1.823 sum -1.365 3.108 20.566 20.844 Atomic orbital electron populations 1.21737 0.97178 1.00134 0.98630 1.19384 0.92970 0.91926 0.88078 0.98138 1.21311 1.42818 0.94189 0.97088 0.94540 1.25833 0.94332 1.03037 0.94862 1.70053 1.48203 1.37758 1.02564 0.85894 0.79713 0.80756 0.77469 1.19463 1.21240 1.17390 1.60670 1.32541 1.32724 1.04593 1.21803 0.95971 0.93297 0.91776 0.92219 1.22507 0.98731 1.01089 1.01262 1.20828 0.97907 0.96682 0.92166 0.91696 1.21511 1.01904 0.97361 0.93637 1.20743 0.95111 0.97207 0.96833 0.91475 1.21920 0.96698 1.00398 1.01403 1.21177 0.97674 0.98028 0.96825 1.20777 0.99339 0.95399 0.94577 0.92734 1.21882 1.00316 0.96895 1.01058 1.21248 0.96385 0.98606 0.96897 0.93554 0.94925 0.94018 0.92541 0.84975 0.95184 0.90256 0.92420 0.91475 0.92529 0.92668 0.92131 0.92989 0.91513 0.92619 0.92095 0.93961 0.92427 0.93754 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.40 71.98 0.68 -4.44 16 2 C 0.19 8.62 2.07 44.17 0.09 8.71 16 3 H 0.00 0.05 4.26 -2.39 -0.01 0.04 16 4 C -0.52 -29.24 8.84 25.60 0.23 -29.01 16 5 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 6 C 0.02 1.00 5.47 84.65 0.46 1.46 16 7 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 8 Si 0.94 44.45 26.99 68.60 1.85 46.30 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.25 -11.14 6.82 99.48 0.68 -10.46 16 12 N -0.68 -26.83 5.28 -472.74 -2.50 -29.33 16 13 C 0.08 2.60 1.94 45.03 0.09 2.69 16 14 H 0.06 1.99 7.10 -2.39 -0.02 1.97 16 15 C -0.18 -5.27 8.79 71.98 0.63 -4.64 16 16 C -0.06 -1.48 1.80 -10.84 -0.02 -1.50 16 17 H 0.06 1.76 6.38 -2.55 -0.02 1.75 16 18 C -0.11 -2.23 4.27 30.26 0.13 -2.10 16 19 C -0.08 -1.42 2.62 -11.55 -0.03 -1.45 16 20 H 0.07 1.05 8.29 -1.29 -0.01 1.04 16 21 C -0.15 -2.45 8.89 71.93 0.64 -1.82 16 22 C -0.10 -1.79 4.78 29.70 0.14 -1.65 16 23 C -0.08 -1.79 2.62 -11.56 -0.03 -1.82 16 24 H 0.05 1.17 8.29 -1.29 -0.01 1.16 16 25 C -0.14 -3.07 8.92 71.92 0.64 -2.42 16 26 C -0.09 -2.52 4.46 30.26 0.13 -2.38 16 27 H 0.05 1.74 7.38 -2.39 -0.02 1.72 16 28 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.33 13.89 8.09 -89.69 -0.73 13.17 16 32 H 0.03 1.01 7.43 -2.39 -0.02 1.00 16 33 H 0.08 1.92 6.38 -2.38 -0.02 1.90 16 34 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.07 1.34 6.31 -2.21 -0.01 1.32 16 36 H 0.06 1.20 8.17 -2.22 -0.02 1.18 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.88 8.06 -2.39 -0.02 0.86 16 39 H 0.05 0.98 4.86 -2.39 -0.01 0.97 16 40 H 0.07 1.05 7.92 -1.74 -0.01 1.04 16 41 H 0.06 0.96 8.24 -1.73 -0.01 0.95 16 42 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 44 H 0.06 1.23 4.94 -2.38 -0.01 1.22 16 45 H 0.04 1.22 8.17 -2.22 -0.02 1.20 16 46 H 0.05 1.75 7.51 -2.21 -0.02 1.73 16 Total: -1.00 -61.46 335.04 3.64 -57.82 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.20 Total: 24.24 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 3.78 Total: -40.37 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -2.20 Total: -88.00 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.85 Total: 46.30 kcal Total: -61.46 3.64 -57.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309731782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.674 kcal (2) G-P(sol) polarization free energy of solvation -61.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds