Wall clock time and date at job start Mon Mar 30 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47130 * 2 1 4 4 N 1.46903 * 109.47036 * 119.99421 * 2 1 3 5 5 C 1.46904 * 111.00114 * 274.82496 * 4 2 1 6 6 H 1.09001 * 109.46664 * 350.25263 * 5 4 2 7 7 C 1.52999 * 109.46747 * 110.25569 * 5 4 2 8 8 C 1.50701 * 109.46729 * 230.25693 * 5 4 2 9 9 H 1.07996 * 120.00616 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99677 * 180.02562 * 8 5 4 11 11 N 1.31508 * 120.00116 * 180.02562 * 10 8 5 12 12 Si 1.86801 * 119.99961 * 359.97438 * 10 8 5 13 13 H 1.48499 * 109.47067 * 90.00271 * 12 10 8 14 14 H 1.48496 * 109.47252 * 210.00226 * 12 10 8 15 15 H 1.48504 * 109.47088 * 330.00142 * 12 10 8 16 16 C 1.53333 * 109.47506 * 239.99530 * 2 1 3 17 17 H 1.08696 * 108.89530 * 300.00322 * 16 2 1 18 18 C 1.52771 * 109.13661 * 60.53692 * 16 2 1 19 19 C 1.52232 * 110.77173 * 180.11955 * 18 16 2 20 20 H 1.11039 * 107.10317 * 189.66386 * 19 18 16 21 21 C 1.52828 * 110.62689 * 73.69902 * 19 18 16 22 22 C 1.51643 * 112.96476 * 307.78079 * 19 18 16 23 23 C 1.51635 * 115.44094 * 43.71524 * 22 19 18 24 24 H 1.11037 * 107.46609 * 198.32035 * 23 22 19 25 25 C 1.52823 * 111.60329 * 81.60894 * 23 22 19 26 26 C 1.52233 * 112.93769 * 316.23180 * 23 22 19 27 27 H 1.08996 * 109.47398 * 295.60043 * 1 2 3 28 28 H 1.09003 * 109.47292 * 55.60447 * 1 2 3 29 29 H 1.09008 * 109.47000 * 175.60412 * 1 2 3 30 30 H 1.00905 * 110.99680 * 150.86975 * 4 2 1 31 31 H 1.08997 * 109.47099 * 67.06402 * 7 5 4 32 32 H 1.09008 * 109.46326 * 187.05903 * 7 5 4 33 33 H 1.08992 * 109.47382 * 307.05948 * 7 5 4 34 34 H 0.97003 * 120.00441 * 180.02562 * 11 10 8 35 35 H 1.09336 * 109.17761 * 300.82596 * 18 16 2 36 36 H 1.09318 * 109.22347 * 59.34980 * 18 16 2 37 37 H 1.09003 * 109.46770 * 60.00222 * 21 19 18 38 38 H 1.08993 * 109.47512 * 179.97438 * 21 19 18 39 39 H 1.08998 * 109.47422 * 300.00511 * 21 19 18 40 40 H 1.10190 * 108.75815 * 166.24434 * 22 19 18 41 41 H 1.10228 * 108.69123 * 281.33150 * 22 19 18 42 42 H 1.09007 * 109.47507 * 59.99387 * 25 23 22 43 43 H 1.09000 * 109.47758 * 179.97438 * 25 23 22 44 44 H 1.09009 * 109.47015 * 299.99905 * 25 23 22 45 45 H 1.09323 * 109.56284 * 291.78400 * 26 23 22 46 46 H 1.09334 * 109.54695 * 172.82957 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0863 0.2238 2.3459 6 1 1.9223 1.2458 2.0042 7 6 1.0077 -0.1532 3.3634 8 6 3.4440 0.1219 2.9919 9 1 4.1832 -0.5559 2.5913 10 6 3.7422 0.8934 4.0951 11 7 4.9271 0.8049 4.6586 12 14 2.4634 2.0653 4.7885 13 1 1.6488 1.3606 5.8108 14 1 3.1443 3.2276 5.4133 15 1 1.5804 2.5393 3.6926 16 6 2.0412 -0.7229 -1.2519 17 1 1.6737 -1.7458 -1.2424 18 6 1.5388 0.0108 -2.4941 19 6 2.0236 -0.6791 -3.7616 20 1 1.7797 -0.0083 -4.6122 21 6 1.2565 -1.9804 -3.9932 22 6 3.5230 -0.9050 -3.7758 23 6 4.1164 -1.4204 -2.4790 24 1 5.2088 -1.2238 -2.5111 25 6 3.9450 -2.9329 -2.3438 26 6 3.5688 -0.7067 -1.2510 27 1 -0.3634 0.4440 0.9267 28 1 -0.3634 0.5805 -0.8480 29 1 -0.3633 -1.0247 -0.0788 30 1 2.9160 -1.1229 1.0280 31 1 1.2418 -1.1250 3.7978 32 1 0.9736 0.5987 4.1520 33 1 0.0394 -0.2015 2.8654 34 1 5.1368 1.3473 5.4350 35 1 0.4457 0.0292 -2.4830 36 1 1.9037 1.0412 -2.4757 37 1 0.1933 -1.7623 -4.0947 38 1 1.6175 -2.4579 -4.9041 39 1 1.4109 -2.6490 -3.1463 40 1 3.7670 -1.6136 -4.5835 41 1 4.0205 0.0425 -4.0399 42 1 4.4464 -3.4312 -3.1736 43 1 4.3828 -3.2656 -1.4026 44 1 2.8836 -3.1810 -2.3589 45 1 3.9176 0.3294 -1.2437 46 1 3.9329 -1.2023 -0.3470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309731783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:58 Heat of formation + Delta-G solvation = -33.625589 kcal Electronic energy + Delta-G solvation = -20365.165093 eV Core-core repulsion = 17674.207107 eV Total energy + Delta-G solvation = -2690.957987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.55036 -36.48733 -33.55424 -32.99921 -31.53622 -29.19590 -28.08136 -27.26068 -25.81406 -24.84466 -23.08651 -21.06027 -20.08492 -19.72405 -17.86345 -16.95607 -15.83821 -14.97097 -14.73537 -14.24735 -13.99985 -13.90391 -13.61111 -13.34262 -13.21995 -12.76405 -12.62282 -12.26459 -12.03417 -11.84888 -11.75287 -11.60695 -11.47549 -11.05618 -10.98025 -10.91416 -10.82944 -10.61293 -10.51146 -10.45910 -10.00040 -9.87079 -9.76105 -9.53180 -9.35458 -8.95222 -8.58440 -7.38856 -6.09547 -4.09270 3.28884 3.37706 3.40311 4.40005 4.68455 4.72817 4.76367 5.05061 5.22632 5.26429 5.26993 5.30278 5.38269 5.47100 5.53325 5.69342 5.73036 5.79528 5.84571 5.91757 5.96992 6.01776 6.05718 6.10342 6.14051 6.20281 6.23017 6.28794 6.37454 6.46218 6.48656 6.50157 6.54267 6.61369 6.67697 6.74745 6.81471 6.93416 6.95833 7.47310 7.61110 8.07249 8.43972 8.64499 8.95196 9.53800 11.03436 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029095 B = 0.005733 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.134917 B = 4882.922414 C = 5381.885916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.036 0.964 4 N -0.679 5.679 5 C 0.180 3.820 6 H 0.012 0.988 7 C -0.135 4.135 8 C -0.528 4.528 9 H 0.075 0.925 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.892 3.108 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.269 1.269 16 C -0.081 4.081 17 H 0.077 0.923 18 C -0.106 4.106 19 C -0.082 4.082 20 H 0.054 0.946 21 C -0.148 4.148 22 C -0.101 4.101 23 C -0.083 4.083 24 H 0.057 0.943 25 C -0.148 4.148 26 C -0.112 4.112 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.340 0.660 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 -3.445 -16.495 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 H 0.054 0.946 4 N -0.313 5.313 5 C 0.071 3.929 6 H 0.029 0.971 7 C -0.193 4.193 8 C -0.567 4.567 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.194 1.194 16 C -0.100 4.100 17 H 0.095 0.905 18 C -0.144 4.144 19 C -0.101 4.101 20 H 0.072 0.928 21 C -0.205 4.205 22 C -0.138 4.138 23 C -0.101 4.101 24 H 0.075 0.925 25 C -0.205 4.205 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.650 -3.618 -16.187 17.870 hybrid contribution 0.237 1.263 0.375 1.338 sum -6.412 -2.355 -15.812 17.225 Atomic orbital electron populations 1.21859 0.95912 1.01250 1.00538 1.21664 0.94934 0.95845 0.89997 0.94575 1.60669 1.33769 1.33334 1.03529 1.19586 0.94721 0.90294 0.88321 0.97056 1.22102 0.98045 1.00587 0.98577 1.21410 0.97244 1.24556 1.13466 0.90693 1.24947 0.95211 0.96535 0.96335 1.69901 1.20835 1.40792 1.22214 0.86788 0.81223 0.80256 0.79472 1.20528 1.22659 1.19383 1.21153 0.95047 1.00099 0.93710 0.90499 1.21485 1.00427 0.98903 0.93620 1.20762 0.94699 0.96906 0.97714 0.92763 1.21927 0.99486 0.97676 1.01403 1.21187 0.94858 1.00764 0.97005 1.20748 0.99467 0.95383 0.94534 0.92478 1.21926 1.02043 0.95278 1.01282 1.21516 0.95391 1.00699 0.97371 0.92869 0.93551 0.92729 0.83843 0.92786 0.95133 0.94941 0.92655 0.91824 0.92412 0.93062 0.93233 0.91981 0.92684 0.92945 0.93427 0.92501 0.92235 0.92260 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.96 37.16 0.33 -1.80 16 2 C 0.09 1.47 2.11 -67.54 -0.14 1.33 16 3 H 0.04 0.69 7.39 -51.93 -0.38 0.30 16 4 N -0.68 -13.83 6.23 -100.77 -0.63 -14.46 16 5 C 0.18 4.30 2.14 -68.86 -0.15 4.15 16 6 H 0.01 0.29 6.22 -51.93 -0.32 -0.03 16 7 C -0.14 -3.09 8.90 37.16 0.33 -2.75 16 8 C -0.53 -14.77 9.18 -34.44 -0.32 -15.08 16 9 H 0.08 2.24 7.59 -52.49 -0.40 1.84 16 10 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 11 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 12 Si 0.89 22.41 24.30 -169.99 -4.13 18.28 16 13 H -0.28 -6.85 6.93 56.52 0.39 -6.46 16 14 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 15 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 16 C -0.08 -1.14 1.74 -90.68 -0.16 -1.30 16 17 H 0.08 1.10 6.38 -52.10 -0.33 0.77 16 18 C -0.11 -1.28 4.28 -27.24 -0.12 -1.40 16 19 C -0.08 -0.87 2.62 -91.79 -0.24 -1.11 16 20 H 0.05 0.54 8.29 -50.76 -0.42 0.12 16 21 C -0.15 -1.44 8.89 37.07 0.33 -1.11 16 22 C -0.10 -1.08 4.78 -28.11 -0.13 -1.21 16 23 C -0.08 -1.00 2.62 -91.79 -0.24 -1.24 16 24 H 0.06 0.69 8.29 -50.76 -0.42 0.27 16 25 C -0.15 -1.68 8.91 37.07 0.33 -1.35 16 26 C -0.11 -1.62 4.39 -27.24 -0.12 -1.74 16 27 H 0.05 0.90 6.81 -51.93 -0.35 0.54 16 28 H 0.05 0.61 6.64 -51.93 -0.34 0.27 16 29 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.34 7.05 5.23 -39.29 -0.21 6.84 16 31 H 0.05 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.03 0.71 3.49 -51.92 -0.18 0.53 16 33 H 0.03 0.65 6.94 -51.93 -0.36 0.29 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.06 0.74 6.42 -51.74 -0.33 0.40 16 36 H 0.06 0.73 8.17 -51.75 -0.42 0.30 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.43 8.06 -51.93 -0.42 0.02 16 39 H 0.06 0.65 4.86 -51.93 -0.25 0.39 16 40 H 0.05 0.54 7.92 -51.25 -0.41 0.13 16 41 H 0.05 0.56 8.24 -51.23 -0.42 0.14 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.06 0.67 4.94 -51.92 -0.26 0.41 16 45 H 0.06 0.92 8.17 -51.75 -0.42 0.50 16 46 H 0.07 1.15 6.09 -51.74 -0.32 0.84 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -28.93 325.15 -7.74 -36.66 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.26 Total: 3.99 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -0.39 Total: -22.63 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.15 Total: -41.21 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.13 Total: 18.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.93 -7.74 -36.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309731783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.039 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds