Wall clock time and date at job start Mon Mar 30 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47130 * 2 1 4 4 N 1.46903 * 109.47036 * 119.99421 * 2 1 3 5 5 C 1.46904 * 111.00114 * 274.82496 * 4 2 1 6 6 H 1.09001 * 109.46664 * 350.25263 * 5 4 2 7 7 C 1.52999 * 109.46747 * 110.25569 * 5 4 2 8 8 C 1.50701 * 109.46729 * 230.25693 * 5 4 2 9 9 H 1.07996 * 120.00616 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99677 * 180.02562 * 8 5 4 11 11 N 1.31508 * 120.00116 * 180.02562 * 10 8 5 12 12 Si 1.86801 * 119.99961 * 359.97438 * 10 8 5 13 13 H 1.48499 * 109.47067 * 90.00271 * 12 10 8 14 14 H 1.48496 * 109.47252 * 210.00226 * 12 10 8 15 15 H 1.48504 * 109.47088 * 330.00142 * 12 10 8 16 16 C 1.53333 * 109.47506 * 239.99530 * 2 1 3 17 17 H 1.08696 * 108.89530 * 300.00322 * 16 2 1 18 18 C 1.52771 * 109.13661 * 60.53692 * 16 2 1 19 19 C 1.52232 * 110.77173 * 180.11955 * 18 16 2 20 20 H 1.11039 * 107.10317 * 189.66386 * 19 18 16 21 21 C 1.52828 * 110.62689 * 73.69902 * 19 18 16 22 22 C 1.51643 * 112.96476 * 307.78079 * 19 18 16 23 23 C 1.51635 * 115.44094 * 43.71524 * 22 19 18 24 24 H 1.11037 * 107.46609 * 198.32035 * 23 22 19 25 25 C 1.52823 * 111.60329 * 81.60894 * 23 22 19 26 26 C 1.52233 * 112.93769 * 316.23180 * 23 22 19 27 27 H 1.08996 * 109.47398 * 295.60043 * 1 2 3 28 28 H 1.09003 * 109.47292 * 55.60447 * 1 2 3 29 29 H 1.09008 * 109.47000 * 175.60412 * 1 2 3 30 30 H 1.00905 * 110.99680 * 150.86975 * 4 2 1 31 31 H 1.08997 * 109.47099 * 67.06402 * 7 5 4 32 32 H 1.09008 * 109.46326 * 187.05903 * 7 5 4 33 33 H 1.08992 * 109.47382 * 307.05948 * 7 5 4 34 34 H 0.97003 * 120.00441 * 180.02562 * 11 10 8 35 35 H 1.09336 * 109.17761 * 300.82596 * 18 16 2 36 36 H 1.09318 * 109.22347 * 59.34980 * 18 16 2 37 37 H 1.09003 * 109.46770 * 60.00222 * 21 19 18 38 38 H 1.08993 * 109.47512 * 179.97438 * 21 19 18 39 39 H 1.08998 * 109.47422 * 300.00511 * 21 19 18 40 40 H 1.10190 * 108.75815 * 166.24434 * 22 19 18 41 41 H 1.10228 * 108.69123 * 281.33150 * 22 19 18 42 42 H 1.09007 * 109.47507 * 59.99387 * 25 23 22 43 43 H 1.09000 * 109.47758 * 179.97438 * 25 23 22 44 44 H 1.09009 * 109.47015 * 299.99905 * 25 23 22 45 45 H 1.09323 * 109.56284 * 291.78400 * 26 23 22 46 46 H 1.09334 * 109.54695 * 172.82957 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0863 0.2238 2.3459 6 1 1.9223 1.2458 2.0042 7 6 1.0077 -0.1532 3.3634 8 6 3.4440 0.1219 2.9919 9 1 4.1832 -0.5559 2.5913 10 6 3.7422 0.8934 4.0951 11 7 4.9271 0.8049 4.6586 12 14 2.4634 2.0653 4.7885 13 1 1.6488 1.3606 5.8108 14 1 3.1443 3.2276 5.4133 15 1 1.5804 2.5393 3.6926 16 6 2.0412 -0.7229 -1.2519 17 1 1.6737 -1.7458 -1.2424 18 6 1.5388 0.0108 -2.4941 19 6 2.0236 -0.6791 -3.7616 20 1 1.7797 -0.0083 -4.6122 21 6 1.2565 -1.9804 -3.9932 22 6 3.5230 -0.9050 -3.7758 23 6 4.1164 -1.4204 -2.4790 24 1 5.2088 -1.2238 -2.5111 25 6 3.9450 -2.9329 -2.3438 26 6 3.5688 -0.7067 -1.2510 27 1 -0.3634 0.4440 0.9267 28 1 -0.3634 0.5805 -0.8480 29 1 -0.3633 -1.0247 -0.0788 30 1 2.9160 -1.1229 1.0280 31 1 1.2418 -1.1250 3.7978 32 1 0.9736 0.5987 4.1520 33 1 0.0394 -0.2015 2.8654 34 1 5.1368 1.3473 5.4350 35 1 0.4457 0.0292 -2.4830 36 1 1.9037 1.0412 -2.4757 37 1 0.1933 -1.7623 -4.0947 38 1 1.6175 -2.4579 -4.9041 39 1 1.4109 -2.6490 -3.1463 40 1 3.7670 -1.6136 -4.5835 41 1 4.0205 0.0425 -4.0399 42 1 4.4464 -3.4312 -3.1736 43 1 4.3828 -3.2656 -1.4026 44 1 2.8836 -3.1810 -2.3589 45 1 3.9176 0.3294 -1.2437 46 1 3.9329 -1.2023 -0.3470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309731783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:58 Heat of formation + Delta-G solvation = -50.817909 kcal Electronic energy + Delta-G solvation = -20365.910608 eV Core-core repulsion = 17674.207107 eV Total energy + Delta-G solvation = -2691.703501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65637 -38.01299 -35.28720 -33.97854 -33.41422 -30.55731 -29.56637 -28.10098 -27.06054 -26.74563 -24.30669 -22.16183 -21.67172 -21.20860 -19.01230 -18.82350 -17.34090 -16.61359 -16.11685 -15.41274 -15.24702 -15.09010 -14.88312 -14.79742 -14.55683 -14.31962 -13.88199 -13.75097 -13.33839 -13.20161 -13.01611 -12.96269 -12.85526 -12.64279 -12.25397 -12.19953 -11.97744 -11.91393 -11.84327 -11.62323 -11.59602 -11.40478 -11.13334 -10.92858 -10.79954 -10.63113 -10.54245 -9.10024 -8.34276 -6.38648 1.28441 1.32148 1.42859 2.28319 3.01201 3.48834 3.73522 3.76344 3.81462 4.20025 4.26300 4.32258 4.37734 4.42192 4.48750 4.56660 4.59750 4.70911 4.73508 4.78102 4.84536 4.92189 4.93637 4.95586 4.98558 5.05308 5.08586 5.11641 5.14449 5.19616 5.22083 5.24600 5.33138 5.41883 5.47776 5.49878 5.54754 5.59956 5.62917 5.68705 5.73295 6.05067 6.49185 6.66476 6.89314 7.28979 8.81990 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029095 B = 0.005733 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.134917 B = 4882.922414 C = 5381.885916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.081 3.919 3 H 0.015 0.985 4 N -0.677 5.677 5 C 0.186 3.814 6 H 0.003 0.997 7 C -0.131 4.131 8 C -0.532 4.532 9 H 0.038 0.962 10 C 0.016 3.984 11 N -0.945 5.945 12 Si 0.952 3.048 13 H -0.265 1.265 14 H -0.297 1.297 15 H -0.254 1.254 16 C -0.069 4.069 17 H 0.080 0.920 18 C -0.103 4.103 19 C -0.081 4.081 20 H 0.069 0.931 21 C -0.146 4.146 22 C -0.100 4.100 23 C -0.080 4.080 24 H 0.052 0.948 25 C -0.145 4.145 26 C -0.110 4.110 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.334 0.666 31 H 0.045 0.955 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 -3.380 -18.355 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 H 0.033 0.967 4 N -0.310 5.310 5 C 0.076 3.924 6 H 0.020 0.980 7 C -0.189 4.189 8 C -0.570 4.570 9 H 0.056 0.944 10 C -0.182 4.182 11 N -0.585 5.585 12 Si 0.779 3.221 13 H -0.191 1.191 14 H -0.225 1.225 15 H -0.178 1.178 16 C -0.088 4.088 17 H 0.098 0.902 18 C -0.141 4.141 19 C -0.100 4.100 20 H 0.088 0.912 21 C -0.203 4.203 22 C -0.138 4.138 23 C -0.098 4.098 24 H 0.070 0.930 25 C -0.202 4.202 26 C -0.148 4.148 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.013 -3.562 -18.067 20.502 hybrid contribution 1.059 1.195 0.904 1.834 sum -7.955 -2.367 -17.164 19.065 Atomic orbital electron populations 1.21815 0.93946 1.02175 1.01025 1.21834 0.96405 0.94720 0.89952 0.96670 1.60728 1.33359 1.32714 1.04185 1.19440 0.92807 0.90558 0.89622 0.97957 1.22014 0.98814 0.99918 0.98125 1.21708 0.98596 1.23353 1.13393 0.94390 1.25790 0.97180 0.98392 0.96816 1.70040 1.23030 1.42328 1.23129 0.85810 0.78907 0.78074 0.79321 1.19109 1.22497 1.17811 1.21048 0.94297 1.00077 0.93384 0.90201 1.21470 1.01079 0.98327 0.93177 1.20752 0.94395 0.97678 0.97130 0.91250 1.21913 0.99881 0.96892 1.01619 1.21181 0.95153 1.01178 0.96239 1.20725 0.99167 0.95742 0.94183 0.92983 1.21901 1.02426 0.94646 1.01270 1.21474 0.96144 0.99541 0.97626 0.94205 0.90917 0.91874 0.84530 0.93565 0.95447 0.92173 0.92476 0.90608 0.93126 0.92285 0.92013 0.92847 0.90964 0.92963 0.91648 0.93965 0.91809 0.94093 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.96 71.98 0.64 -3.12 16 2 C 0.08 2.72 2.11 45.02 0.10 2.81 16 3 H 0.02 0.58 7.39 -2.39 -0.02 0.56 16 4 N -0.68 -27.83 6.23 -472.73 -2.95 -30.77 16 5 C 0.19 8.90 2.14 44.17 0.09 8.99 16 6 H 0.00 0.14 6.22 -2.39 -0.01 0.12 16 7 C -0.13 -5.79 8.90 71.98 0.64 -5.15 16 8 C -0.53 -30.71 9.18 25.60 0.24 -30.47 16 9 H 0.04 2.41 7.59 -2.91 -0.02 2.39 16 10 C 0.02 0.96 5.45 84.66 0.46 1.42 16 11 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 12 Si 0.95 46.07 24.30 68.60 1.67 47.74 16 13 H -0.27 -12.24 6.93 99.48 0.69 -11.55 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.25 -11.59 6.53 99.48 0.65 -10.94 16 16 C -0.07 -1.89 1.74 -10.84 -0.02 -1.91 16 17 H 0.08 2.16 6.38 -2.55 -0.02 2.15 16 18 C -0.10 -2.25 4.28 30.26 0.13 -2.12 16 19 C -0.08 -1.47 2.62 -11.55 -0.03 -1.50 16 20 H 0.07 1.11 8.29 -1.28 -0.01 1.10 16 21 C -0.15 -2.34 8.89 71.92 0.64 -1.70 16 22 C -0.10 -1.93 4.78 29.70 0.14 -1.78 16 23 C -0.08 -1.88 2.62 -11.55 -0.03 -1.91 16 24 H 0.05 1.26 8.29 -1.29 -0.01 1.25 16 25 C -0.15 -3.16 8.91 71.92 0.64 -2.51 16 26 C -0.11 -3.27 4.39 30.26 0.13 -3.13 16 27 H 0.04 1.24 6.81 -2.39 -0.02 1.22 16 28 H 0.07 1.69 6.64 -2.39 -0.02 1.68 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.33 14.46 5.23 -89.69 -0.47 13.99 16 31 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 32 H 0.03 1.21 3.49 -2.38 -0.01 1.20 16 33 H 0.06 2.30 6.94 -2.39 -0.02 2.29 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.08 1.49 6.42 -2.21 -0.01 1.48 16 36 H 0.05 1.19 8.17 -2.22 -0.02 1.17 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 39 H 0.05 0.95 4.86 -2.39 -0.01 0.94 16 40 H 0.07 1.18 7.92 -1.75 -0.01 1.17 16 41 H 0.05 1.01 8.24 -1.73 -0.01 1.00 16 42 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 44 H 0.06 1.33 4.94 -2.38 -0.01 1.32 16 45 H 0.04 1.33 8.17 -2.22 -0.02 1.31 16 46 H 0.04 1.49 6.09 -2.21 -0.01 1.48 16 Total: -1.00 -63.27 325.15 3.22 -60.05 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.43 Total: 24.34 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 3.78 Total: -42.08 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.65 Total: -90.04 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.74 kcal Total: -63.27 3.22 -60.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309731783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.230 kcal (2) G-P(sol) polarization free energy of solvation -63.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds