Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46687 * 2 1 4 4 H 1.09003 * 109.47033 * 180.75869 * 3 2 1 5 5 C 1.50699 * 109.47302 * 60.76097 * 3 2 1 6 6 H 1.08003 * 120.00421 * 240.00037 * 5 3 2 7 7 C 1.37879 * 119.99840 * 59.99200 * 5 3 2 8 8 N 1.31515 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00029 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46801 * 60.00679 * 9 7 5 11 11 H 1.48502 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47307 * 300.00626 * 9 7 5 13 13 N 1.46897 * 109.47601 * 300.75785 * 3 2 1 14 14 C 1.46899 * 111.00453 * 277.08688 * 13 3 2 15 15 H 1.09005 * 110.01180 * 33.45374 * 14 13 3 16 16 C 1.54261 * 110.03331 * 272.06499 * 14 13 3 17 17 C 1.54887 * 104.19681 * 217.10375 * 16 14 13 18 18 C 1.54894 * 102.74714 * 37.93948 * 17 16 14 19 19 H 1.09000 * 110.48614 * 80.86951 * 18 17 16 20 20 C 1.53006 * 110.48678 * 203.38324 * 18 17 16 21 21 C 1.53002 * 109.46853 * 293.89574 * 20 18 17 22 22 C 1.53001 * 109.46870 * 294.80037 * 21 20 18 23 23 C 1.52997 * 109.47087 * 174.80363 * 21 20 18 24 24 C 1.54080 * 109.92812 * 154.92669 * 14 13 3 25 25 H 1.08996 * 109.47272 * 304.75396 * 1 2 3 26 26 H 1.09000 * 109.47449 * 64.76475 * 1 2 3 27 27 H 1.09005 * 109.47082 * 184.75845 * 1 2 3 28 28 H 1.09003 * 109.47044 * 240.00955 * 2 1 3 29 29 H 1.08990 * 109.47740 * 120.00284 * 2 1 3 30 30 H 0.96997 * 120.00159 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00022 * 153.13249 * 13 3 2 32 32 H 1.09001 * 110.49111 * 98.42190 * 16 14 13 33 33 H 1.09005 * 110.48713 * 335.77744 * 16 14 13 34 34 H 1.09006 * 110.75481 * 279.63246 * 17 16 14 35 35 H 1.08996 * 110.91697 * 156.32730 * 17 16 14 36 36 H 1.08995 * 109.47459 * 173.89502 * 20 18 17 37 37 H 1.09001 * 109.46991 * 53.89252 * 20 18 17 38 38 H 1.08998 * 109.47226 * 54.79813 * 21 20 18 39 39 H 1.08999 * 109.47535 * 299.99965 * 22 21 20 40 40 H 1.08999 * 109.47034 * 60.00488 * 22 21 20 41 41 H 1.09008 * 109.46931 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47241 * 175.12877 * 23 21 20 43 43 H 1.09003 * 109.46922 * 295.12612 * 23 21 20 44 44 H 1.09000 * 109.47528 * 55.12584 * 23 21 20 45 45 H 1.08998 * 110.16460 * 0.12384 * 24 14 13 46 46 H 1.09000 * 110.00830 * 238.62594 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 -0.0136 5 6 1.5530 2.1475 1.2398 6 1 0.9308 3.0260 1.1524 7 6 1.9016 1.6708 2.4857 8 7 2.6595 0.6012 2.5921 9 14 1.2975 2.5442 4.0225 10 1 -0.1874 2.5434 4.0408 11 1 1.8082 1.8391 5.2256 12 1 1.7918 3.9444 4.0228 13 7 1.5353 2.1403 -1.1901 14 6 2.3767 1.8599 -2.3612 15 1 2.7701 0.8450 -2.3034 16 6 3.5375 2.8734 -2.4327 17 6 3.7114 3.1455 -3.9475 18 6 2.2509 3.1513 -4.4636 19 1 1.7813 4.1154 -4.2687 20 6 2.2101 2.8295 -5.9589 21 6 2.8825 3.9589 -6.7420 22 6 2.0664 5.2436 -6.5863 23 6 2.9577 3.5787 -8.2221 24 6 1.5556 2.0383 -3.6527 25 1 -0.3633 0.5858 0.8443 26 1 -0.3634 0.4381 -0.9296 27 1 -0.3633 -1.0242 0.0853 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 2.9051 0.2661 3.4686 31 1 1.4653 3.1333 -1.0246 32 1 4.4473 2.4415 -2.0158 33 1 3.2749 3.7920 -1.9078 34 1 4.2848 2.3479 -4.4199 35 1 4.1849 4.1125 -4.1173 36 1 1.1736 2.7310 -6.2812 37 1 2.7386 1.8943 -6.1438 38 1 3.8894 4.1191 -6.3564 39 1 1.0595 5.0835 -6.9719 40 1 2.0129 5.5145 -5.5319 41 1 2.5452 6.0482 -7.1447 42 1 3.3572 4.4170 -8.7928 43 1 3.6099 2.7136 -8.3423 44 1 1.9596 3.3344 -8.5857 45 1 0.5348 2.3346 -3.4110 46 1 1.5500 1.1091 -4.2224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310018263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -44.419994 kcal Electronic energy + Delta-G solvation = -19638.126975 eV Core-core repulsion = 16946.700908 eV Total energy + Delta-G solvation = -2691.426067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.84742 -36.46864 -34.75965 -32.02763 -30.49919 -29.01956 -27.65113 -27.24536 -25.62161 -23.94085 -23.08001 -20.89028 -19.70455 -19.27565 -18.65699 -16.33545 -15.66418 -15.04795 -14.97665 -14.40607 -13.95556 -13.67026 -13.32537 -13.10862 -12.96240 -12.73410 -12.34627 -12.15981 -11.83560 -11.78545 -11.57637 -11.50625 -11.01355 -10.93279 -10.86674 -10.82433 -10.56780 -10.43928 -10.30261 -10.24684 -10.12569 -9.97836 -9.86059 -9.53244 -9.31794 -8.72768 -8.42276 -7.09157 -5.97966 -4.03058 3.32618 3.37328 3.40001 4.43093 4.66076 4.80897 4.85613 5.04705 5.09447 5.24206 5.33551 5.47351 5.52266 5.55649 5.63999 5.71966 5.77411 5.83702 5.88208 5.89870 5.97450 6.05887 6.13075 6.15536 6.20326 6.28356 6.34569 6.38665 6.46789 6.60276 6.69669 6.72497 6.75029 6.80542 6.91963 7.28440 7.42565 7.55710 7.79704 7.84709 7.90893 8.34323 8.49517 8.76702 9.07631 9.61595 11.07951 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.004225 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.566347 B = 6625.829986 C = 6864.144474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.679 5.679 14 C 0.086 3.914 15 H 0.069 0.931 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.094 4.094 19 H 0.072 0.928 20 C -0.105 4.105 21 C -0.099 4.099 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.109 4.109 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.012 0.988 28 H 0.008 0.992 29 H 0.086 0.914 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 4.968 -16.445 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.025 4.025 15 H 0.087 0.913 16 C -0.189 4.189 17 C -0.153 4.153 18 C -0.112 4.112 19 H 0.091 0.909 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.205 4.205 23 C -0.205 4.205 24 C -0.147 4.147 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.326 4.338 -16.427 16.993 hybrid contribution 0.573 0.903 1.141 1.564 sum 0.900 5.241 -15.286 16.184 Atomic orbital electron populations 1.21438 0.97581 0.97303 1.01277 1.21446 0.94967 0.98456 0.99306 1.19096 0.92740 0.91304 0.85999 0.98385 1.21151 1.31413 1.11886 0.90418 0.92466 1.24886 0.95106 0.95019 0.98880 1.69875 1.36539 1.22687 1.23787 0.86659 0.79201 0.79612 0.82506 1.20238 1.21400 1.20436 1.60807 1.51181 1.14057 1.04871 1.22170 0.90752 0.97876 0.91718 0.91285 1.23112 1.00131 1.00055 0.95627 1.22488 0.96249 1.00503 0.96033 1.22063 0.96060 0.99391 0.93719 0.90940 1.21682 1.00331 0.97676 0.94577 1.21141 0.99854 0.95513 0.95190 1.21885 0.99832 0.96907 1.01926 1.21850 1.01545 1.00973 0.96086 1.22287 0.99939 0.97317 0.95166 0.92559 0.93989 0.96917 0.97332 0.89613 0.92982 0.85311 0.92304 0.91739 0.92038 0.92502 0.92249 0.92157 0.91192 0.92915 0.92227 0.93268 0.93070 0.92910 0.92880 0.91002 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.52 37.16 0.35 -2.35 16 2 C -0.10 -2.54 5.54 -26.73 -0.15 -2.69 16 3 C 0.22 5.37 2.15 -68.87 -0.15 5.22 16 4 H 0.00 -0.04 7.80 -51.93 -0.41 -0.45 16 5 C -0.51 -13.72 7.29 -34.44 -0.25 -13.97 16 6 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.35 11.31 55.43 0.63 -24.72 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.14 5.26 -99.67 -0.52 -14.67 16 14 C 0.09 1.53 3.02 -66.49 -0.20 1.33 16 15 H 0.07 1.34 7.02 -51.93 -0.36 0.98 16 16 C -0.15 -2.42 6.36 -25.08 -0.16 -2.58 16 17 C -0.11 -1.49 5.48 -24.74 -0.14 -1.62 16 18 C -0.09 -1.17 2.69 -88.95 -0.24 -1.41 16 19 H 0.07 0.92 6.48 -51.93 -0.34 0.58 16 20 C -0.11 -1.12 4.04 -26.73 -0.11 -1.23 16 21 C -0.10 -0.94 2.83 -90.62 -0.26 -1.19 16 22 C -0.15 -1.36 8.96 37.16 0.33 -1.03 16 23 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 24 C -0.11 -1.62 6.18 -25.50 -0.16 -1.78 16 25 H 0.06 1.38 7.08 -51.93 -0.37 1.01 16 26 H 0.04 0.91 7.74 -51.93 -0.40 0.51 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.01 0.19 7.32 -51.93 -0.38 -0.19 16 29 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.33 6.81 7.64 -39.29 -0.30 6.51 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 34 H 0.06 0.77 8.03 -51.93 -0.42 0.36 16 35 H 0.06 0.68 7.88 -51.93 -0.41 0.27 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.69 7.14 -51.93 -0.37 0.32 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.58 6.51 -51.93 -0.34 0.24 16 41 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 46 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -27.00 345.20 -9.54 -36.54 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.95 Total: 3.95 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -0.87 Total: -22.56 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.10 Total: -39.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.00 -9.54 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310018263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.879 kcal (2) G-P(sol) polarization free energy of solvation -27.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds