Wall clock time and date at job start Mon Mar 30 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47021 * 2 1 4 4 H 1.09008 * 109.46931 * 302.10902 * 3 2 1 5 5 C 1.50702 * 109.46920 * 182.11426 * 3 2 1 6 6 H 1.08007 * 119.99704 * 239.99748 * 5 3 2 7 7 C 1.37868 * 120.00352 * 59.99392 * 5 3 2 8 8 N 1.31521 * 119.99995 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00202 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46935 * 90.00189 * 9 7 5 11 11 H 1.48506 * 109.47630 * 210.00075 * 9 7 5 12 12 H 1.48501 * 109.47244 * 330.00357 * 9 7 5 13 13 N 1.46902 * 109.47557 * 62.10974 * 3 2 1 14 14 C 1.46893 * 110.99961 * 266.91782 * 13 3 2 15 15 H 1.09008 * 109.47590 * 50.32050 * 14 13 3 16 16 C 1.52997 * 109.47385 * 290.32014 * 14 13 3 17 17 C 1.53004 * 109.47150 * 170.31893 * 14 13 3 18 18 C 1.53002 * 117.49819 * 253.54518 * 17 14 13 19 19 C 1.52990 * 117.49861 * 359.97438 * 18 17 14 20 20 C 1.52993 * 117.49349 * 145.02251 * 18 17 14 21 21 C 1.52997 * 117.49992 * 184.88451 * 17 14 13 22 22 C 1.52997 * 117.50081 * 214.98357 * 21 17 14 23 23 C 1.53003 * 117.49823 * 359.97438 * 21 17 14 24 24 H 1.09006 * 109.47033 * 304.83937 * 1 2 3 25 25 H 1.08995 * 109.47175 * 64.83918 * 1 2 3 26 26 H 1.09003 * 109.47228 * 184.84082 * 1 2 3 27 27 H 1.08995 * 109.47123 * 239.99857 * 2 1 3 28 28 H 1.09002 * 109.46699 * 119.99930 * 2 1 3 29 29 H 0.96997 * 120.00103 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99445 * 30.86785 * 13 3 2 31 31 H 1.09004 * 109.47254 * 294.24587 * 16 14 13 32 32 H 1.09001 * 109.47637 * 174.24539 * 16 14 13 33 33 H 1.09002 * 109.47051 * 54.24269 * 16 14 13 34 34 H 1.08999 * 115.54803 * 39.21841 * 17 14 13 35 35 H 1.09003 * 109.47465 * 75.59358 * 19 18 17 36 36 H 1.09006 * 109.47111 * 195.58634 * 19 18 17 37 37 H 1.09002 * 109.47583 * 315.58890 * 19 18 17 38 38 H 1.08999 * 109.47690 * 59.75882 * 20 18 17 39 39 H 1.09000 * 109.46740 * 179.75611 * 20 18 17 40 40 H 1.08995 * 109.47425 * 299.75279 * 20 18 17 41 41 H 1.09000 * 109.47288 * 60.28959 * 22 21 17 42 42 H 1.09000 * 109.47344 * 180.29751 * 22 21 17 43 43 H 1.09006 * 109.47103 * 300.29513 * 22 21 17 44 44 H 1.09006 * 109.46822 * 50.29684 * 23 21 17 45 45 H 1.09006 * 109.46967 * 170.28576 * 23 21 17 46 46 H 1.09000 * 109.47572 * 290.29356 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6461 1.9671 -0.8705 5 6 3.5461 1.4428 -0.0524 6 1 4.1141 1.9006 0.7441 7 6 4.1990 0.8586 -1.1170 8 7 3.5074 0.3014 -2.0870 9 14 6.0659 0.8596 -1.1822 10 1 6.5851 -0.3610 -0.5145 11 1 6.5118 0.8766 -2.5987 12 1 6.5849 2.0639 -0.4854 13 7 1.5925 2.1202 1.2241 14 6 0.3250 2.8282 1.0004 15 1 -0.3916 2.1520 0.5339 16 6 0.5661 4.0281 0.0824 17 6 -0.2308 3.3147 2.3404 18 6 -1.4394 2.5731 2.9150 19 6 -2.0000 1.4022 2.1056 20 6 -1.5184 2.4229 4.4355 21 6 -1.6089 3.9792 2.3342 22 6 -1.8445 5.1265 3.3186 23 6 -2.3256 4.1068 0.9884 24 1 -0.3633 0.5871 0.8435 25 1 -0.3633 0.4369 -0.9301 26 1 -0.3634 -1.0240 0.0867 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9668 -0.1092 -2.8362 30 1 1.5121 1.4679 1.9897 31 1 1.2019 4.7528 0.5911 32 1 -0.3879 4.4931 -0.1661 33 1 1.0563 3.6934 -0.8319 34 1 0.5082 3.6952 3.0455 35 1 -1.3440 0.5385 2.2137 36 1 -2.9953 1.1505 2.4722 37 1 -2.0605 1.6832 1.0541 38 1 -1.5353 3.4098 4.8979 39 1 -2.4268 1.8820 4.7004 40 1 -0.6493 1.8697 4.7917 41 1 -1.1398 5.9322 3.1129 42 1 -2.8633 5.4975 3.2071 43 1 -1.6980 4.7671 4.3372 44 1 -2.3294 3.1396 0.4857 45 1 -3.3521 4.4346 1.1531 46 1 -1.8061 4.8369 0.3678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336722028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:46 Heat of formation + Delta-G solvation = 22.428985 kcal Electronic energy + Delta-G solvation = -20616.840833 eV Core-core repulsion = 17928.313555 eV Total energy + Delta-G solvation = -2688.527278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94283 -36.41406 -32.83168 -31.49546 -30.78361 -29.44085 -28.04655 -27.16217 -26.43430 -25.78224 -23.08570 -21.17939 -19.49596 -18.66291 -17.53683 -16.21755 -15.83112 -15.09512 -14.61764 -14.30455 -13.85828 -13.77285 -13.39341 -12.99327 -12.70450 -12.59144 -12.35529 -12.10486 -11.88718 -11.78373 -11.72199 -11.57152 -11.40074 -11.14146 -10.97077 -10.87255 -10.69910 -10.60238 -10.38129 -10.18197 -9.90938 -9.80107 -9.50680 -9.18178 -8.91268 -8.84460 -8.25426 -7.00945 -5.91361 -3.93512 3.36199 3.42549 3.47478 3.84609 4.49123 4.71725 4.86433 4.90986 5.14943 5.23756 5.38535 5.47712 5.63155 5.65779 5.73146 5.75694 5.81211 5.90543 5.95863 5.99118 6.02307 6.05154 6.09131 6.18346 6.19317 6.23698 6.27835 6.32166 6.37900 6.45944 6.54391 6.65353 6.72485 6.75169 6.91563 7.03085 7.07054 7.32373 7.54604 7.83576 7.98846 8.40965 8.71156 8.74049 9.14668 9.71324 11.15003 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.030143 B = 0.005714 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.668724 B = 4898.664795 C = 5103.002602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.103 3.897 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.125 4.125 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.096 0.904 28 H 0.032 0.968 29 H 0.258 0.742 30 H 0.323 0.677 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 5.120 8.457 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.187 4.187 3 C 0.109 3.891 4 H 0.053 0.947 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.307 5.307 14 C -0.007 4.007 15 H 0.067 0.933 16 C -0.204 4.204 17 C -0.139 4.139 18 C -0.127 4.127 19 C -0.182 4.182 20 C -0.178 4.178 21 C -0.121 4.121 22 C -0.178 4.178 23 C -0.182 4.182 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.854 5.599 8.161 15.442 hybrid contribution 0.458 -0.905 -0.176 1.029 sum -11.397 4.694 7.985 14.686 Atomic orbital electron populations 1.22406 0.99900 0.99564 1.00975 1.22240 0.91440 1.02312 1.02708 1.19196 0.94738 0.88153 0.87006 0.94670 1.21231 0.91109 1.34645 1.05793 0.92080 1.24945 0.98134 0.95771 0.95772 1.69880 1.34822 1.38925 1.10272 0.86564 0.86026 0.78282 0.76889 1.20951 1.21498 1.19971 1.60792 1.26965 1.33790 1.09188 1.21269 0.91974 0.95448 0.91994 0.93329 1.22014 1.00461 0.97952 0.99956 1.22740 0.89763 1.02050 0.99327 1.21737 1.03191 0.92838 0.94887 1.21662 0.99954 0.96775 0.99790 1.21463 1.01497 1.01860 0.93010 1.21630 0.99976 0.93332 0.97134 1.21472 1.01138 0.96774 0.98427 1.21637 0.98898 1.02524 0.95105 0.91963 0.94090 0.95061 0.88618 0.94876 0.93227 0.86086 0.92921 0.92985 0.92068 0.87830 0.91600 0.92902 0.91353 0.91728 0.92757 0.92301 0.92414 0.92730 0.91705 0.91718 0.93060 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 8.74 37.16 0.32 -3.01 16 2 C -0.15 -3.47 5.12 -26.73 -0.14 -3.61 16 3 C 0.22 5.34 2.02 -68.87 -0.14 5.20 16 4 H 0.04 0.96 6.04 -51.92 -0.31 0.64 16 5 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 8 N -0.90 -25.78 11.31 55.43 0.63 -25.15 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -14.24 5.84 -100.95 -0.59 -14.83 16 14 C 0.10 1.81 1.37 -67.72 -0.09 1.72 16 15 H 0.05 0.87 2.65 -51.92 -0.14 0.73 16 16 C -0.15 -2.63 9.04 37.16 0.34 -2.29 16 17 C -0.12 -1.79 4.67 -90.62 -0.42 -2.22 16 18 C -0.13 -1.64 2.70 -154.48 -0.42 -2.05 16 19 C -0.13 -1.64 7.47 37.15 0.28 -1.36 16 20 C -0.12 -1.37 9.69 37.15 0.36 -1.01 16 21 C -0.12 -1.51 2.62 -154.47 -0.41 -1.92 16 22 C -0.12 -1.31 9.69 37.16 0.36 -0.95 16 23 C -0.13 -1.53 8.00 37.16 0.30 -1.23 16 24 H 0.06 1.08 1.77 -51.93 -0.09 0.99 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 2.56 6.02 -51.93 -0.31 2.25 16 28 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.32 6.60 8.14 -39.29 -0.32 6.28 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.79 4.66 -51.93 -0.24 0.55 16 33 H 0.06 1.26 6.38 -51.93 -0.33 0.93 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.07 0.92 6.51 -51.93 -0.34 0.58 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.94 3.97 -51.93 -0.21 0.73 16 38 H 0.06 0.67 5.05 -51.93 -0.26 0.40 16 39 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.53 8.05 -51.93 -0.42 0.11 16 43 H 0.06 0.66 5.05 -51.93 -0.26 0.39 16 44 H 0.06 0.83 4.87 -51.93 -0.25 0.58 16 45 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 46 H 0.07 0.83 5.71 -51.93 -0.30 0.54 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -27.83 325.55 -7.68 -35.52 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.55 Total: 8.02 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.04 Total: -39.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.83 -7.68 -35.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336722028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.947 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds