Wall clock time and date at job start Mon Mar 30 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 108.94219 * 2 1 4 4 C 1.54434 * 109.02197 * 241.13135 * 2 1 3 5 5 C 1.50756 * 109.02478 * 162.00104 * 4 2 1 6 6 C 1.54168 * 112.60520 * 93.02048 * 5 4 2 7 7 C 1.53873 * 112.00301 * 318.45548 * 6 5 4 8 8 C 1.50815 * 111.59573 * 319.11229 * 7 6 5 9 9 N 1.39782 * 109.02322 * 118.87087 * 2 1 3 10 10 C 1.46900 * 110.99489 * 309.71761 * 9 2 1 11 11 C 1.52997 * 109.47467 * 299.50012 * 10 9 2 12 12 C 1.52998 * 109.47083 * 330.26800 * 11 10 9 13 13 C 1.52999 * 109.47327 * 90.26845 * 11 10 9 14 14 C 1.52999 * 109.47251 * 210.26675 * 11 10 9 15 15 C 1.50703 * 109.47550 * 179.97438 * 14 11 10 16 16 H 1.08001 * 119.99034 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00312 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99754 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47013 * 60.00026 * 19 17 15 21 21 H 1.48503 * 109.47160 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47196 * 299.99979 * 19 17 15 23 23 H 1.08997 * 109.47079 * 297.19082 * 1 2 3 24 24 H 1.08999 * 109.47231 * 57.19573 * 1 2 3 25 25 H 1.08996 * 109.46724 * 177.19273 * 1 2 3 26 26 H 1.08993 * 109.54732 * 281.87028 * 4 2 1 27 27 H 1.09004 * 109.54328 * 42.14485 * 4 2 1 28 28 H 1.08995 * 108.85630 * 213.82348 * 5 4 2 29 29 H 1.08999 * 108.85583 * 332.21353 * 5 4 2 30 30 H 1.09000 * 108.98125 * 79.12334 * 6 5 4 31 31 H 1.08996 * 108.98415 * 197.93045 * 6 5 4 32 32 H 1.09011 * 109.12096 * 198.52654 * 7 6 5 33 33 H 1.09004 * 109.00146 * 79.62071 * 7 6 5 34 34 H 1.08996 * 109.74448 * 335.34031 * 8 7 6 35 35 H 1.09004 * 109.74857 * 214.66294 * 8 7 6 36 36 H 1.09008 * 109.47341 * 59.50048 * 10 9 2 37 37 H 1.09002 * 109.46750 * 179.49710 * 10 9 2 38 38 H 1.09001 * 109.47196 * 64.31329 * 12 11 10 39 39 H 1.08997 * 109.47267 * 184.32096 * 12 11 10 40 40 H 1.09003 * 109.46962 * 304.31813 * 12 11 10 41 41 H 1.08995 * 109.47112 * 42.72169 * 13 11 10 42 42 H 1.08993 * 109.47310 * 162.72773 * 13 11 10 43 43 H 1.09010 * 109.46860 * 282.72616 * 13 11 10 44 44 H 1.08999 * 109.47244 * 299.99832 * 14 11 10 45 45 H 1.09005 * 109.47214 * 60.00242 * 14 11 10 46 46 H 0.97001 * 119.99899 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0310 0.0000 4 6 2.0333 -0.7049 -1.2786 5 6 3.4750 -0.3302 -1.5112 6 6 4.4580 -1.3402 -0.8863 7 6 4.0033 -1.7986 0.5104 8 6 3.4529 -0.6509 1.3194 9 7 1.9856 -0.6381 1.1572 10 6 1.3287 -0.0924 2.3525 11 6 1.6436 1.4001 2.4711 12 6 3.0143 1.6828 1.8531 13 6 0.5746 2.2073 1.7319 14 6 1.6568 1.8028 3.9471 15 6 1.9676 3.2728 4.0641 16 1 2.1382 3.8609 3.1745 17 6 2.0342 3.8666 5.3066 18 7 1.8269 3.1502 6.3898 19 14 2.4202 5.6885 5.4515 20 1 1.3831 6.4728 4.7341 21 1 2.4329 6.0794 6.8841 22 1 3.7508 5.9619 4.8515 23 1 -0.3633 0.4696 0.9141 24 1 -0.3633 0.5567 -0.8638 25 1 -0.3632 -1.0264 -0.0503 26 1 1.9525 -1.7848 -1.1555 27 1 1.4321 -0.3876 -2.1306 28 1 3.6570 -0.2796 -2.5846 29 1 3.6576 0.6532 -1.0781 30 1 4.5338 -2.2107 -1.5379 31 1 5.4396 -0.8740 -0.8022 32 1 4.8533 -2.2309 1.0386 33 1 3.2304 -2.5592 0.4002 34 1 3.8717 0.2884 0.9582 35 1 3.7060 -0.7867 2.3709 36 1 0.2506 -0.2308 2.2697 37 1 1.6948 -0.6126 3.2377 38 1 2.9826 1.4680 0.7849 39 1 3.2726 2.7307 2.0056 40 1 3.7645 1.0508 2.3285 41 1 -0.4094 1.7921 1.9496 42 1 0.6116 3.2459 2.0604 43 1 0.7601 2.1588 0.6588 44 1 0.6802 1.6014 4.3874 45 1 2.4184 1.2278 4.4739 46 1 1.8734 3.5680 7.2639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353473048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:56 Heat of formation + Delta-G solvation = 32.616251 kcal Electronic energy + Delta-G solvation = -21065.595382 eV Core-core repulsion = 18377.509857 eV Total energy + Delta-G solvation = -2688.085525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79611 -36.34625 -33.81988 -32.87960 -31.84222 -28.56630 -27.91336 -27.09541 -25.64145 -24.62839 -23.28976 -22.26651 -19.76989 -19.22658 -17.93321 -16.24487 -16.02175 -15.35913 -15.16765 -14.57558 -14.39602 -13.68862 -13.52950 -13.01504 -12.87320 -12.61782 -12.51738 -12.18805 -11.96650 -11.67693 -11.41290 -11.12039 -11.01826 -10.80565 -10.70880 -10.68847 -10.52076 -10.44216 -10.30056 -10.17448 -10.15222 -9.90811 -9.80694 -9.48075 -9.19209 -8.90742 -8.32459 -7.34843 -5.96684 -3.97233 3.32919 3.37996 3.39893 4.36331 4.47649 4.88886 4.98897 5.03010 5.27714 5.35949 5.38592 5.47070 5.59023 5.66139 5.71757 5.85333 5.87632 5.90356 5.93685 5.96839 6.05434 6.14227 6.18780 6.25118 6.29289 6.33445 6.36092 6.42796 6.44530 6.46186 6.52634 6.62980 6.67866 6.70681 6.84868 7.14369 7.18349 7.28830 7.66114 7.72142 7.83483 7.97795 8.02882 8.47381 9.07744 9.65408 11.14426 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.031004 B = 0.005842 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.883939 B = 4791.698538 C = 4975.862817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 H 0.053 0.947 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.121 4.121 8 C 0.042 3.958 9 N -0.545 5.545 10 C 0.061 3.939 11 C -0.089 4.089 12 C -0.157 4.157 13 C -0.139 4.139 14 C 0.037 3.963 15 C -0.509 4.509 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.014 0.986 45 H 0.013 0.987 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -8.113 -13.984 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.085 4.085 9 N -0.268 5.268 10 C -0.066 4.066 11 C -0.090 4.090 12 C -0.213 4.213 13 C -0.196 4.196 14 C 0.000 4.000 15 C -0.547 4.547 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.401 -8.564 -13.860 16.353 hybrid contribution 0.436 1.836 0.330 1.915 sum 1.836 -6.728 -13.530 15.222 Atomic orbital electron populations 1.22425 0.95410 1.01706 1.02772 1.20752 0.94963 0.96702 0.90001 0.92956 1.21530 0.95183 1.01421 0.96880 1.21413 0.95322 0.99433 0.99703 1.21901 0.98257 0.98464 0.96620 1.21531 1.00236 0.99310 0.94847 1.22673 0.87480 0.98600 0.99718 1.59092 1.06806 1.58316 1.02592 1.22548 0.98907 0.93871 0.91271 1.21213 0.94273 0.93827 0.99715 1.22886 0.97588 1.02634 0.98206 1.22238 0.97401 1.01899 0.98015 1.19105 0.96858 0.96018 0.88026 1.21212 1.47144 0.94543 0.91844 0.92535 1.25005 0.95741 0.97619 0.96122 1.69951 1.50271 1.35692 0.97691 0.86753 0.78836 0.86089 0.76875 1.20378 1.21393 1.20408 0.90123 0.93274 0.92889 0.91266 0.92217 0.92907 0.92326 0.92841 0.92743 0.92668 0.91227 0.90685 0.91068 0.90978 0.91392 0.92981 0.92331 0.92337 0.93777 0.91585 0.94089 0.96750 0.96834 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 7.41 37.16 0.28 -1.94 16 2 C 0.09 1.19 1.41 -70.63 -0.10 1.09 16 3 H 0.05 0.81 2.85 -51.93 -0.15 0.66 16 4 C -0.11 -1.34 5.00 -27.10 -0.14 -1.48 16 5 C -0.12 -1.38 5.31 -27.24 -0.14 -1.53 16 6 C -0.11 -1.26 5.91 -25.67 -0.15 -1.41 16 7 C -0.12 -1.49 5.41 -27.37 -0.15 -1.63 16 8 C 0.04 0.60 3.28 -4.52 -0.01 0.58 16 9 N -0.54 -8.14 3.96 -231.66 -0.92 -9.06 16 10 C 0.06 1.05 4.80 -3.83 -0.02 1.03 16 11 C -0.09 -1.72 0.53 -154.51 -0.08 -1.80 16 12 C -0.16 -2.90 6.05 37.16 0.22 -2.68 16 13 C -0.14 -2.57 6.98 37.16 0.26 -2.31 16 14 C 0.04 0.93 3.87 -27.88 -0.11 0.82 16 15 C -0.51 -13.84 7.35 -34.44 -0.25 -14.09 16 16 H 0.06 1.50 5.84 -52.49 -0.31 1.20 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.08 1.17 2.99 -51.93 -0.16 1.02 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.85 7.11 -51.93 -0.37 0.49 16 27 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.73 6.00 -51.93 -0.31 0.42 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 34 H 0.08 1.12 3.13 -51.93 -0.16 0.95 16 35 H 0.07 1.11 7.02 -51.93 -0.36 0.74 16 36 H 0.07 1.21 5.54 -51.92 -0.29 0.92 16 37 H 0.07 1.24 7.52 -51.93 -0.39 0.85 16 38 H 0.05 0.86 2.71 -51.93 -0.14 0.72 16 39 H 0.06 1.20 6.49 -51.93 -0.34 0.87 16 40 H 0.06 1.07 5.37 -51.93 -0.28 0.79 16 41 H 0.04 0.78 6.42 -51.93 -0.33 0.44 16 42 H 0.07 1.38 6.25 -51.93 -0.32 1.05 16 43 H 0.04 0.67 4.97 -51.92 -0.26 0.41 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.01 0.36 8.11 -51.93 -0.42 -0.06 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -28.09 305.81 -8.56 -36.65 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.48 Total: 1.10 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -0.49 Total: -23.86 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.18 Total: -35.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.09 -8.56 -36.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353473048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.266 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds