Wall clock time and date at job start Mon Mar 30 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.50699 * 109.47337 * 185.00273 * 5 4 2 8 8 H 1.07996 * 120.00075 * 120.00083 * 7 5 4 9 9 C 1.37881 * 120.00069 * 299.99865 * 7 5 4 10 10 N 1.31512 * 119.99545 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 119.99995 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47188 * 90.00457 * 11 9 7 13 13 H 1.48507 * 109.46854 * 210.00114 * 11 9 7 14 14 H 1.48495 * 109.47053 * 330.00047 * 11 9 7 15 15 N 1.46905 * 109.47150 * 64.99960 * 5 4 2 16 16 C 1.46897 * 111.00060 * 204.99892 * 15 5 4 17 17 H 1.09000 * 109.47754 * 325.00582 * 16 15 5 18 18 C 1.53006 * 109.47001 * 85.00137 * 16 15 5 19 19 C 1.52999 * 109.47061 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47070 * 300.00093 * 19 18 16 21 21 C 1.52999 * 109.47121 * 60.00269 * 20 19 18 22 22 H 1.09004 * 109.46748 * 180.02562 * 21 20 19 23 23 C 1.52994 * 109.46943 * 59.99954 * 21 20 19 24 24 C 1.52997 * 109.47267 * 205.00062 * 16 15 5 25 25 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 26 26 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 28 28 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 31 31 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 32 32 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 33 33 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 34 34 H 0.97005 * 119.99898 * 180.02562 * 10 9 7 35 35 H 1.00900 * 110.99951 * 328.95928 * 15 5 4 36 36 H 1.08994 * 109.47207 * 300.00302 * 18 16 15 37 37 H 1.09005 * 109.46630 * 60.00140 * 18 16 15 38 38 H 1.09000 * 109.46718 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.47353 * 60.00074 * 19 18 16 40 40 H 1.09001 * 109.47331 * 299.99839 * 20 19 18 41 41 H 1.09000 * 109.47112 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47022 * 299.99333 * 23 21 20 43 43 H 1.08994 * 109.47482 * 59.99897 * 23 21 20 44 44 H 1.09007 * 109.46910 * 179.97438 * 23 21 20 45 45 H 1.09001 * 109.47234 * 300.00102 * 24 16 15 46 46 H 1.08997 * 109.47354 * 59.99944 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.0294 -2.8783 2.4723 8 1 1.2751 -3.3414 3.0911 9 6 3.3529 -2.9120 2.8572 10 7 4.2713 -2.3477 2.1038 11 14 3.8414 -3.7592 4.4487 12 1 4.1420 -5.1878 4.1770 13 1 5.0463 -3.0982 5.0116 14 1 2.7245 -3.6648 5.4227 15 7 2.3166 -2.8438 0.0595 16 6 1.5641 -4.0161 -0.4066 17 1 1.0928 -4.5074 0.4447 18 6 0.4876 -3.5700 -1.3981 19 6 -0.2958 -4.7911 -1.8840 20 6 0.6588 -5.7682 -2.5731 21 6 1.7353 -6.2144 -1.5816 22 1 2.4156 -6.9102 -2.0728 23 6 1.0738 -6.9045 -0.3871 24 6 2.5183 -4.9937 -1.0955 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1263 -0.6442 1.2952 33 1 1.6053 -0.2617 2.1370 34 1 5.2026 -2.3717 2.3743 35 1 2.4709 -2.1902 -0.6936 36 1 -0.1921 -2.8735 -0.9073 37 1 0.9589 -3.0787 -2.2494 38 1 -1.0624 -4.4732 -2.5907 39 1 -0.7670 -5.2827 -1.0330 40 1 1.1301 -5.2766 -3.4242 41 1 0.1007 -6.6380 -2.9197 42 1 0.3938 -6.2083 0.1039 43 1 0.5157 -7.7743 -0.7333 44 1 1.8408 -7.2228 0.3191 45 1 2.9895 -4.5025 -1.9468 46 1 3.2852 -5.3116 -0.3893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381037660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:27 Heat of formation + Delta-G solvation = -36.571465 kcal Electronic energy + Delta-G solvation = -20691.513297 eV Core-core repulsion = 18000.427568 eV Total energy + Delta-G solvation = -2691.085729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.86168 -36.60144 -33.64041 -32.17298 -31.03361 -29.19156 -26.63505 -26.33420 -26.05440 -24.91642 -21.78061 -21.15870 -20.62423 -18.68058 -18.04754 -15.95863 -15.49980 -14.76789 -14.43482 -14.13029 -13.92711 -13.53674 -13.38889 -13.14084 -12.68692 -12.48970 -12.17702 -12.00675 -11.93227 -11.66048 -11.31518 -11.17446 -10.87908 -10.84332 -10.72938 -10.59610 -10.53817 -10.50517 -10.33000 -9.91170 -9.83267 -9.68083 -9.63609 -9.27848 -9.12094 -8.72077 -8.21332 -6.62800 -5.70769 -3.85432 3.38848 3.45834 3.48854 4.57961 5.06977 5.12912 5.21070 5.44424 5.59447 5.64324 5.68369 5.70827 5.72930 5.76134 5.87143 5.90960 6.05219 6.09312 6.11697 6.18595 6.26056 6.31885 6.34728 6.37719 6.38228 6.44230 6.54387 6.60611 6.64400 6.70749 6.74359 6.77259 6.83965 6.89267 7.06884 7.12392 7.24529 7.33475 7.49363 7.93294 8.09162 8.51264 8.72044 9.04502 9.30997 9.82955 11.28261 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.009682 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.427768 B = 2891.238004 C = 4411.854681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.109 4.109 5 C 0.223 3.777 6 H -0.012 1.012 7 C -0.523 4.523 8 H 0.044 0.956 9 C 0.091 3.909 10 N -0.850 5.850 11 Si 0.873 3.127 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.278 1.278 15 N -0.646 5.646 16 C 0.098 3.902 17 H 0.076 0.924 18 C -0.149 4.149 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.091 4.091 22 H 0.059 0.941 23 C -0.148 4.148 24 C -0.096 4.096 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.252 0.748 35 H 0.304 0.696 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 -1.638 -8.046 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.197 4.197 4 C -0.148 4.148 5 C 0.117 3.883 6 H 0.006 0.994 7 C -0.562 4.562 8 H 0.063 0.937 9 C -0.114 4.114 10 N -0.486 5.486 11 Si 0.701 3.299 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.203 1.203 15 N -0.275 5.275 16 C -0.013 4.013 17 H 0.094 0.906 18 C -0.189 4.189 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.110 4.110 22 H 0.078 0.922 23 C -0.205 4.205 24 C -0.135 4.135 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.177 -1.930 -7.630 9.421 hybrid contribution -0.418 -0.097 0.399 0.586 sum -5.595 -2.026 -7.231 9.365 Atomic orbital electron populations 1.21893 0.96908 1.01301 0.99975 1.21295 0.94497 0.95546 1.00908 1.21793 1.00913 0.96963 1.00064 1.21833 1.04170 0.95836 0.92919 1.19077 0.89390 0.90251 0.89621 0.99381 1.20963 0.92563 1.37546 1.05161 0.93723 1.24806 0.96716 0.94556 0.95332 1.69953 1.00238 1.42433 1.35937 0.86946 0.77904 0.80046 0.84984 1.20941 1.21532 1.20331 1.60924 1.49191 1.08524 1.08876 1.21425 0.91162 0.93787 0.94960 0.90587 1.22421 0.99382 0.97225 0.99840 1.21508 0.97488 0.96644 0.99717 1.21531 0.97015 0.98316 0.97900 1.21105 0.96639 0.97449 0.95813 0.92238 1.21906 1.00841 0.99616 0.98126 1.21477 0.98028 0.94401 0.99546 0.94464 0.92654 0.93399 0.92338 0.92894 0.94285 0.93449 0.88366 0.94205 0.93805 0.87730 0.92624 0.93022 0.93305 0.91987 0.92568 0.92988 0.91794 0.93878 0.92778 0.93268 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.95 37.15 0.33 -2.06 16 2 C -0.10 -1.90 2.82 -90.62 -0.26 -2.15 16 3 C -0.14 -2.28 9.19 37.16 0.34 -1.93 16 4 C -0.11 -2.45 3.97 -26.73 -0.11 -2.56 16 5 C 0.22 5.31 1.90 -68.86 -0.13 5.18 16 6 H -0.01 -0.27 5.33 -51.93 -0.28 -0.55 16 7 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.04 1.24 7.81 -52.49 -0.41 0.83 16 9 C 0.09 2.48 5.23 -17.82 -0.09 2.39 16 10 N -0.85 -23.50 10.86 55.43 0.60 -22.90 16 11 Si 0.87 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 N -0.65 -14.39 5.36 -100.95 -0.54 -14.94 16 16 C 0.10 1.89 2.00 -67.71 -0.14 1.76 16 17 H 0.08 1.65 5.92 -51.93 -0.31 1.34 16 18 C -0.15 -2.46 5.16 -26.73 -0.14 -2.60 16 19 C -0.12 -1.63 5.65 -26.73 -0.15 -1.78 16 20 C -0.11 -1.47 5.45 -26.73 -0.15 -1.62 16 21 C -0.09 -1.35 3.19 -90.65 -0.29 -1.64 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.15 -2.18 8.50 37.15 0.32 -1.87 16 24 C -0.10 -1.73 5.05 -26.76 -0.14 -1.86 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.97 5.21 -51.93 -0.27 0.70 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.09 6.29 -51.93 -0.33 0.76 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 2.49 6.22 -51.93 -0.32 2.17 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.30 6.55 6.16 -39.29 -0.24 6.31 16 36 H 0.06 0.96 6.17 -51.93 -0.32 0.64 16 37 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.01 4.81 -51.93 -0.25 0.76 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -26.64 333.50 -9.36 -36.00 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.54 Total: 5.74 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -0.89 Total: -25.21 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.06 Total: -37.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.64 -9.36 -36.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381037660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.573 kcal (2) G-P(sol) polarization free energy of solvation -26.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds