Wall clock time and date at job start Mon Mar 30 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46930 * 2 1 4 4 H 1.08999 * 109.47121 * 305.81442 * 3 2 1 5 5 C 1.50698 * 109.47283 * 185.81112 * 3 2 1 6 6 H 1.07995 * 120.00343 * 240.00326 * 5 3 2 7 7 C 1.37887 * 119.99746 * 60.00155 * 5 3 2 8 8 N 1.31512 * 120.00061 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99963 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47212 * 89.99687 * 9 7 5 11 11 H 1.48493 * 109.47117 * 210.00182 * 9 7 5 12 12 H 1.48503 * 109.46882 * 329.99830 * 9 7 5 13 13 N 1.46902 * 109.46980 * 65.81284 * 3 2 1 14 14 C 1.46898 * 111.00298 * 260.20982 * 13 3 2 15 15 H 1.09000 * 110.67140 * 34.14956 * 14 13 3 16 16 C 1.54891 * 110.75922 * 270.72046 * 14 13 3 17 17 C 1.54370 * 104.19691 * 203.71454 * 16 14 13 18 18 C 1.53870 * 106.54781 * 23.64638 * 17 16 14 19 19 C 1.53004 * 110.03248 * 240.65587 * 18 17 16 20 20 C 1.52994 * 110.03804 * 119.26881 * 18 17 16 21 21 C 1.53006 * 109.46924 * 62.09059 * 20 18 17 22 22 C 1.52996 * 109.47218 * 302.09716 * 20 18 17 23 23 C 1.54269 * 106.63907 * 359.95783 * 18 17 16 24 24 H 1.08999 * 109.47351 * 296.90251 * 1 2 3 25 25 H 1.09000 * 109.46833 * 56.90666 * 1 2 3 26 26 H 1.09002 * 109.46955 * 176.90220 * 1 2 3 27 27 H 1.09001 * 109.47428 * 240.00195 * 2 1 3 28 28 H 1.08997 * 109.47163 * 120.00075 * 2 1 3 29 29 H 0.96997 * 120.00285 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99959 * 136.25780 * 13 3 2 31 31 H 1.09003 * 110.47824 * 322.41758 * 16 14 13 32 32 H 1.08999 * 110.49207 * 84.92295 * 16 14 13 33 33 H 1.08999 * 110.06840 * 264.36947 * 17 16 14 34 34 H 1.09005 * 110.04350 * 142.90845 * 17 16 14 35 35 H 1.09001 * 109.46748 * 297.90823 * 19 18 17 36 36 H 1.09005 * 109.47223 * 57.90245 * 19 18 17 37 37 H 1.08996 * 109.47575 * 177.90539 * 19 18 17 38 38 H 1.08994 * 109.47433 * 182.08690 * 20 18 17 39 39 H 1.09004 * 109.47120 * 59.99976 * 21 20 18 40 40 H 1.09002 * 109.46963 * 300.00294 * 21 20 18 41 41 H 1.08995 * 109.47275 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47540 * 180.02562 * 22 20 18 43 43 H 1.09008 * 109.47105 * 299.99304 * 22 20 18 44 44 H 1.09002 * 109.47450 * 59.99228 * 22 20 18 45 45 H 1.09004 * 110.48263 * 95.09502 * 23 18 17 46 46 H 1.09001 * 110.48875 * 217.60688 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5941 1.9855 -0.8333 5 6 3.5400 1.4450 -0.1439 6 1 4.1557 1.8859 0.6262 7 6 4.1266 0.8844 -1.2587 8 7 3.3770 0.3479 -2.1966 9 14 5.9861 0.8868 -1.4367 10 1 6.5432 -0.3480 -0.8286 11 1 6.3454 0.9351 -2.8767 12 1 6.5478 2.0756 -0.7463 13 7 1.6681 2.0933 1.2634 14 6 0.4759 2.9341 1.0917 15 1 -0.2042 2.4931 0.3629 16 6 0.8736 4.3725 0.6768 17 6 -0.3231 5.2397 1.1229 18 6 -1.0300 4.4651 2.2489 19 6 -2.4719 4.1515 1.8441 20 6 -1.0153 5.2864 3.5396 21 6 -1.7870 6.5898 3.3235 22 6 0.4306 5.6076 3.9232 23 6 -0.2401 3.1549 2.4472 24 1 -0.3634 0.4650 0.9164 25 1 -0.3633 0.5611 -0.8610 26 1 -0.3633 -1.0262 -0.0555 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7895 -0.0462 -2.9811 30 1 2.4382 2.6294 1.6344 31 1 1.7824 4.6809 1.1936 32 1 1.0102 4.4342 -0.4028 33 1 -1.0068 5.3915 0.2878 34 1 0.0306 6.2009 1.4960 35 1 -3.0179 5.0829 1.6945 36 1 -2.4724 3.5772 0.9176 37 1 -2.9524 3.5711 2.6317 38 1 -1.4850 4.7144 4.3396 39 1 -2.8172 6.3610 3.0501 40 1 -1.3173 7.1618 2.5233 41 1 -1.7769 7.1748 4.2431 42 1 0.4412 6.1924 4.8430 43 1 0.9805 4.6791 4.0771 44 1 0.9003 6.1796 3.1230 45 1 0.4889 3.2668 3.2498 46 1 -0.9185 2.3291 2.6615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381388402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:40 Heat of formation + Delta-G solvation = -35.889421 kcal Electronic energy + Delta-G solvation = -20312.574714 eV Core-core repulsion = 17621.518560 eV Total energy + Delta-G solvation = -2691.056154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63164 -36.20932 -33.69055 -31.80906 -30.63047 -29.44496 -28.34796 -27.04751 -25.51319 -24.00395 -22.55935 -21.79925 -19.80514 -19.39398 -17.77247 -16.53769 -15.78698 -14.91676 -14.65725 -14.40492 -13.82022 -13.56212 -13.45158 -13.22443 -12.59207 -12.38341 -12.22351 -12.05650 -11.92318 -11.80452 -11.53260 -11.36400 -11.23443 -11.08222 -10.94937 -10.89266 -10.63483 -10.58182 -10.16007 -10.12815 -10.05761 -10.00732 -9.86443 -9.56778 -9.25235 -8.77778 -8.39910 -7.10545 -5.99790 -4.07158 3.30149 3.36805 3.39408 4.41533 4.72907 4.81637 4.87537 5.22307 5.28222 5.34090 5.34945 5.53787 5.62230 5.66122 5.70267 5.81709 5.83049 5.92911 5.95113 5.96496 6.04158 6.13562 6.18820 6.24316 6.30036 6.31592 6.40589 6.43663 6.48820 6.50305 6.55554 6.68286 6.72151 6.79929 6.87435 7.12741 7.21990 7.51079 7.65951 7.80921 8.01345 8.32823 8.47998 8.76396 9.07243 9.58719 11.04939 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.005401 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.876049 B = 5183.451183 C = 5680.398581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.008 0.992 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.090 3.910 15 H 0.077 0.923 16 C -0.150 4.150 17 C -0.112 4.112 18 C -0.061 4.061 19 C -0.138 4.138 20 C -0.082 4.082 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.107 4.107 24 H 0.044 0.956 25 H 0.034 0.966 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 9.254 8.446 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.025 0.975 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.022 4.022 15 H 0.095 0.905 16 C -0.190 4.190 17 C -0.150 4.150 18 C -0.061 4.061 19 C -0.196 4.196 20 C -0.100 4.100 21 C -0.207 4.207 22 C -0.209 4.209 23 C -0.145 4.145 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.819 8.596 8.486 15.566 hybrid contribution 1.372 0.712 -0.747 1.717 sum -8.447 9.308 7.739 14.761 Atomic orbital electron populations 1.21828 0.99726 0.98629 0.99768 1.21537 0.91446 0.99768 1.01699 1.19090 0.94053 0.91025 0.84725 0.97476 1.21446 0.91723 1.38182 1.04863 0.92488 1.24911 0.98001 0.95176 0.95741 1.69890 1.34691 1.38702 1.09318 0.86589 0.85830 0.78418 0.77097 1.20649 1.21319 1.20028 1.60715 1.06351 1.32810 1.31244 1.22570 0.93966 0.90307 0.95327 0.90535 1.23086 0.97465 0.97527 1.00918 1.22274 0.97224 0.98364 0.97176 1.21172 0.95133 0.95494 0.94332 1.21950 0.95563 1.00850 1.01202 1.21087 0.96019 0.95855 0.97052 1.21937 1.00201 0.97352 1.01174 1.21977 0.96425 1.01859 1.00617 1.22540 0.98347 0.94899 0.98669 0.93671 0.94656 0.95456 0.89413 0.94596 0.92977 0.85201 0.91994 0.92201 0.92513 0.91957 0.92928 0.92609 0.93070 0.91668 0.92665 0.92578 0.93342 0.93489 0.91865 0.92413 0.91091 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.68 37.16 0.32 -2.64 16 2 C -0.11 -2.59 5.45 -26.73 -0.15 -2.74 16 3 C 0.22 5.43 2.12 -68.86 -0.15 5.28 16 4 H 0.01 0.21 7.58 -51.93 -0.39 -0.19 16 5 C -0.52 -14.20 8.60 -34.44 -0.30 -14.49 16 6 H 0.06 1.53 7.42 -52.49 -0.39 1.14 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.25 6.00 -98.87 -0.59 -14.85 16 14 C 0.09 1.58 2.12 -65.72 -0.14 1.45 16 15 H 0.08 1.47 6.22 -51.93 -0.32 1.15 16 16 C -0.15 -2.46 6.41 -25.02 -0.16 -2.62 16 17 C -0.11 -1.49 5.03 -25.56 -0.13 -1.62 16 18 C -0.06 -0.76 0.48 -153.39 -0.07 -0.83 16 19 C -0.14 -1.61 7.79 37.16 0.29 -1.32 16 20 C -0.08 -0.90 2.29 -90.62 -0.21 -1.10 16 21 C -0.15 -1.45 8.60 37.16 0.32 -1.13 16 22 C -0.15 -1.70 8.65 37.16 0.32 -1.37 16 23 C -0.11 -1.58 5.41 -25.07 -0.14 -1.71 16 24 H 0.04 0.89 6.82 -51.93 -0.35 0.54 16 25 H 0.03 0.73 8.03 -51.93 -0.42 0.31 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 2.39 5.94 -51.93 -0.31 2.08 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.91 7.44 -39.29 -0.29 6.61 16 31 H 0.06 1.02 7.79 -51.93 -0.40 0.62 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.06 0.77 4.99 -51.93 -0.26 0.51 16 35 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.51 6.44 -51.93 -0.33 0.17 16 40 H 0.06 0.55 6.61 -51.93 -0.34 0.21 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.76 6.05 -51.92 -0.31 0.45 16 44 H 0.06 0.67 6.35 -51.93 -0.33 0.34 16 45 H 0.07 1.06 5.70 -51.93 -0.30 0.76 16 46 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -27.06 333.83 -8.65 -35.70 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.42 Total: 5.73 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -0.27 Total: -23.20 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.03 Total: -39.47 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.06 -8.65 -35.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381388402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.185 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds