Wall clock time and date at job start Mon Mar 30 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46930 * 2 1 4 4 H 1.08999 * 109.47121 * 305.81442 * 3 2 1 5 5 C 1.50698 * 109.47283 * 185.81112 * 3 2 1 6 6 H 1.07995 * 120.00343 * 240.00326 * 5 3 2 7 7 C 1.37887 * 119.99746 * 60.00155 * 5 3 2 8 8 N 1.31512 * 120.00061 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99963 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47212 * 89.99687 * 9 7 5 11 11 H 1.48493 * 109.47117 * 210.00182 * 9 7 5 12 12 H 1.48503 * 109.46882 * 329.99830 * 9 7 5 13 13 N 1.46902 * 109.46980 * 65.81284 * 3 2 1 14 14 C 1.46898 * 111.00298 * 260.20982 * 13 3 2 15 15 H 1.09000 * 110.67140 * 34.14956 * 14 13 3 16 16 C 1.54891 * 110.75922 * 270.72046 * 14 13 3 17 17 C 1.54370 * 104.19691 * 203.71454 * 16 14 13 18 18 C 1.53870 * 106.54781 * 23.64638 * 17 16 14 19 19 C 1.53004 * 110.03248 * 240.65587 * 18 17 16 20 20 C 1.52994 * 110.03804 * 119.26881 * 18 17 16 21 21 C 1.53006 * 109.46924 * 62.09059 * 20 18 17 22 22 C 1.52996 * 109.47218 * 302.09716 * 20 18 17 23 23 C 1.54269 * 106.63907 * 359.95783 * 18 17 16 24 24 H 1.08999 * 109.47351 * 296.90251 * 1 2 3 25 25 H 1.09000 * 109.46833 * 56.90666 * 1 2 3 26 26 H 1.09002 * 109.46955 * 176.90220 * 1 2 3 27 27 H 1.09001 * 109.47428 * 240.00195 * 2 1 3 28 28 H 1.08997 * 109.47163 * 120.00075 * 2 1 3 29 29 H 0.96997 * 120.00285 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99959 * 136.25780 * 13 3 2 31 31 H 1.09003 * 110.47824 * 322.41758 * 16 14 13 32 32 H 1.08999 * 110.49207 * 84.92295 * 16 14 13 33 33 H 1.08999 * 110.06840 * 264.36947 * 17 16 14 34 34 H 1.09005 * 110.04350 * 142.90845 * 17 16 14 35 35 H 1.09001 * 109.46748 * 297.90823 * 19 18 17 36 36 H 1.09005 * 109.47223 * 57.90245 * 19 18 17 37 37 H 1.08996 * 109.47575 * 177.90539 * 19 18 17 38 38 H 1.08994 * 109.47433 * 182.08690 * 20 18 17 39 39 H 1.09004 * 109.47120 * 59.99976 * 21 20 18 40 40 H 1.09002 * 109.46963 * 300.00294 * 21 20 18 41 41 H 1.08995 * 109.47275 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47540 * 180.02562 * 22 20 18 43 43 H 1.09008 * 109.47105 * 299.99304 * 22 20 18 44 44 H 1.09002 * 109.47450 * 59.99228 * 22 20 18 45 45 H 1.09004 * 110.48263 * 95.09502 * 23 18 17 46 46 H 1.09001 * 110.48875 * 217.60688 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5941 1.9855 -0.8333 5 6 3.5400 1.4450 -0.1439 6 1 4.1557 1.8859 0.6262 7 6 4.1266 0.8844 -1.2587 8 7 3.3770 0.3479 -2.1966 9 14 5.9861 0.8868 -1.4367 10 1 6.5432 -0.3480 -0.8286 11 1 6.3454 0.9351 -2.8767 12 1 6.5478 2.0756 -0.7463 13 7 1.6681 2.0933 1.2634 14 6 0.4759 2.9341 1.0917 15 1 -0.2042 2.4931 0.3629 16 6 0.8736 4.3725 0.6768 17 6 -0.3231 5.2397 1.1229 18 6 -1.0300 4.4651 2.2489 19 6 -2.4719 4.1515 1.8441 20 6 -1.0153 5.2864 3.5396 21 6 -1.7870 6.5898 3.3235 22 6 0.4306 5.6076 3.9232 23 6 -0.2401 3.1549 2.4472 24 1 -0.3634 0.4650 0.9164 25 1 -0.3633 0.5611 -0.8610 26 1 -0.3633 -1.0262 -0.0555 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7895 -0.0462 -2.9811 30 1 2.4382 2.6294 1.6344 31 1 1.7824 4.6809 1.1936 32 1 1.0102 4.4342 -0.4028 33 1 -1.0068 5.3915 0.2878 34 1 0.0306 6.2009 1.4960 35 1 -3.0179 5.0829 1.6945 36 1 -2.4724 3.5772 0.9176 37 1 -2.9524 3.5711 2.6317 38 1 -1.4850 4.7144 4.3396 39 1 -2.8172 6.3610 3.0501 40 1 -1.3173 7.1618 2.5233 41 1 -1.7769 7.1748 4.2431 42 1 0.4412 6.1924 4.8430 43 1 0.9805 4.6791 4.0771 44 1 0.9003 6.1796 3.1230 45 1 0.4889 3.2668 3.2498 46 1 -0.9185 2.3291 2.6615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381388402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:40 Heat of formation + Delta-G solvation = -49.850579 kcal Electronic energy + Delta-G solvation = -20313.180115 eV Core-core repulsion = 17621.518560 eV Total energy + Delta-G solvation = -2691.661555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78949 -37.87705 -35.19908 -33.62491 -32.10261 -30.69858 -29.66442 -28.38645 -26.92535 -25.29110 -24.38905 -22.79168 -21.34652 -21.24577 -18.81544 -18.51312 -17.12330 -16.62551 -16.03860 -15.68240 -15.28040 -14.96211 -14.60398 -14.45112 -14.26661 -14.00812 -13.58741 -13.30404 -13.18333 -13.03884 -12.89799 -12.77350 -12.72338 -12.47342 -12.43193 -12.23132 -12.09053 -12.02309 -11.86570 -11.58832 -11.47156 -11.21695 -11.05896 -10.95268 -10.86046 -10.74589 -10.49044 -8.86226 -8.10228 -6.25473 1.40486 1.41510 1.51005 2.41338 3.15957 3.52918 3.77014 3.82446 4.09765 4.25962 4.27799 4.35466 4.50734 4.58049 4.61613 4.68558 4.72255 4.78485 4.81131 4.83245 4.88170 4.90456 5.03884 5.07418 5.08875 5.09679 5.15253 5.18035 5.28223 5.30368 5.33332 5.36377 5.39717 5.47598 5.53041 5.57318 5.67626 5.71588 5.74407 5.78323 5.97991 6.30428 6.54824 6.87513 7.09921 7.44921 8.93187 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.005401 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.876049 B = 5183.451183 C = 5680.398581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C 0.228 3.772 4 H -0.028 1.028 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.678 5.678 14 C 0.086 3.914 15 H 0.059 0.941 16 C -0.147 4.147 17 C -0.104 4.104 18 C -0.054 4.054 19 C -0.138 4.138 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.098 4.098 24 H 0.056 0.944 25 H 0.029 0.971 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 10.388 9.877 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C 0.119 3.881 4 H -0.010 1.010 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.307 5.307 14 C -0.025 4.025 15 H 0.078 0.922 16 C -0.187 4.187 17 C -0.142 4.142 18 C -0.055 4.055 19 C -0.195 4.195 20 C -0.097 4.097 21 C -0.204 4.204 22 C -0.209 4.209 23 C -0.136 4.136 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.532 9.742 9.931 17.448 hybrid contribution 1.585 0.360 -1.194 2.017 sum -8.947 10.102 8.737 16.076 Atomic orbital electron populations 1.21665 0.96903 0.99908 1.00096 1.21394 0.93984 0.99003 0.99728 1.18838 0.92882 0.91192 0.85157 1.00999 1.21797 0.93071 1.38210 1.05033 0.92609 1.25689 1.02415 0.94815 0.95459 1.70026 1.36427 1.39248 1.09701 0.85577 0.80502 0.78592 0.77069 1.20163 1.21007 1.19330 1.60683 1.07179 1.33825 1.29035 1.22619 0.92526 0.90373 0.96999 0.92242 1.22994 0.98916 0.97459 0.99317 1.22232 0.95855 0.98417 0.97681 1.21123 0.95217 0.94191 0.94957 1.21944 0.94985 1.01680 1.00856 1.21063 0.96162 0.96414 0.96015 1.21913 1.00245 0.96489 1.01760 1.21969 0.96377 1.01349 1.01165 1.22467 0.98264 0.96370 0.96491 0.92498 0.95187 0.93552 0.92363 0.95380 0.92977 0.85323 0.92296 0.94635 0.92137 0.90514 0.91277 0.93907 0.92170 0.91101 0.91955 0.92752 0.92203 0.92061 0.93137 0.92941 0.91026 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.68 71.98 0.62 -4.73 16 2 C -0.10 -5.13 5.45 30.59 0.17 -4.96 16 3 C 0.23 11.68 2.12 44.17 0.09 11.77 16 4 H -0.03 -1.59 7.58 -2.39 -0.02 -1.61 16 5 C -0.54 -30.08 8.60 25.60 0.22 -29.86 16 6 H 0.06 3.03 7.42 -2.91 -0.02 3.01 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.91 -53.33 11.29 21.45 0.24 -53.09 16 9 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 N -0.68 -28.86 6.00 -466.73 -2.80 -31.66 16 14 C 0.09 3.05 2.12 46.20 0.10 3.15 16 15 H 0.06 2.34 6.22 -2.39 -0.01 2.32 16 16 C -0.15 -4.87 6.41 31.71 0.20 -4.67 16 17 C -0.10 -2.62 5.03 31.35 0.16 -2.47 16 18 C -0.05 -1.25 0.48 -51.46 -0.02 -1.27 16 19 C -0.14 -2.87 7.79 71.98 0.56 -2.31 16 20 C -0.08 -1.50 2.29 -10.79 -0.02 -1.52 16 21 C -0.15 -2.35 8.60 71.98 0.62 -1.73 16 22 C -0.15 -3.05 8.65 71.98 0.62 -2.43 16 23 C -0.10 -2.79 5.41 31.67 0.17 -2.62 16 24 H 0.06 2.21 6.82 -2.39 -0.02 2.20 16 25 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 3.27 5.94 -2.39 -0.01 3.26 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.33 14.01 7.44 -89.69 -0.67 13.34 16 31 H 0.06 1.96 7.79 -2.39 -0.02 1.94 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.50 7.67 -2.39 -0.02 1.48 16 34 H 0.08 1.74 4.99 -2.38 -0.01 1.73 16 35 H 0.07 1.22 6.43 -2.39 -0.02 1.21 16 36 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 0.92 6.44 -2.39 -0.02 0.90 16 40 H 0.05 0.89 6.61 -2.39 -0.02 0.88 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.05 1.14 6.05 -2.38 -0.01 1.12 16 44 H 0.05 1.10 6.35 -2.39 -0.02 1.09 16 45 H 0.07 2.05 5.70 -2.38 -0.01 2.04 16 46 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 Total: -1.00 -58.70 333.83 3.67 -55.03 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.27 Total: 26.07 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 3.94 Total: -42.34 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.56 Total: -84.75 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -58.70 3.67 -55.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381388402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.180 kcal (2) G-P(sol) polarization free energy of solvation -58.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds