Wall clock time and date at job start Mon Mar 30 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 H 1.09003 * 109.47276 * 304.19602 * 3 2 1 5 5 C 1.50701 * 109.46851 * 184.20207 * 3 2 1 6 6 H 1.08006 * 119.99929 * 240.00319 * 5 3 2 7 7 C 1.37879 * 120.00305 * 59.99905 * 5 3 2 8 8 N 1.31514 * 119.99788 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00243 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47021 * 59.99548 * 9 7 5 11 11 H 1.48491 * 109.47396 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46832 * 300.00091 * 9 7 5 13 13 N 1.46897 * 109.47542 * 64.19941 * 3 2 1 14 14 C 1.46899 * 111.00208 * 204.77452 * 13 3 2 15 15 H 1.09005 * 110.43422 * 321.22967 * 14 13 3 16 16 C 1.54885 * 110.48841 * 83.77153 * 14 13 3 17 17 C 1.54882 * 102.74772 * 156.62017 * 16 14 13 18 18 C 1.54264 * 104.19841 * 322.05499 * 17 16 14 19 19 C 1.52996 * 110.03631 * 264.27829 * 18 17 16 20 20 C 1.53003 * 110.02916 * 142.89576 * 18 17 16 21 21 C 1.52989 * 109.47387 * 61.45718 * 20 18 17 22 22 C 1.53008 * 109.46862 * 181.45987 * 20 18 17 23 23 C 1.53878 * 106.59770 * 23.61345 * 18 17 16 24 24 H 1.09004 * 109.47275 * 294.91986 * 1 2 3 25 25 H 1.09007 * 109.47457 * 54.92060 * 1 2 3 26 26 H 1.08997 * 109.47249 * 174.92067 * 1 2 3 27 27 H 1.08993 * 109.47279 * 120.00088 * 2 1 3 28 28 H 1.09000 * 109.46510 * 240.00433 * 2 1 3 29 29 H 0.96998 * 119.99855 * 180.02562 * 8 7 5 30 30 H 1.00908 * 110.99509 * 80.81910 * 13 3 2 31 31 H 1.08997 * 110.75525 * 274.93668 * 16 14 13 32 32 H 1.09000 * 110.75290 * 38.30258 * 16 14 13 33 33 H 1.08999 * 110.49140 * 80.74032 * 17 16 14 34 34 H 1.09003 * 110.48562 * 203.37939 * 17 16 14 35 35 H 1.09002 * 109.47215 * 58.54659 * 19 18 17 36 36 H 1.09002 * 109.47294 * 178.54382 * 19 18 17 37 37 H 1.09003 * 109.46971 * 298.54646 * 19 18 17 38 38 H 1.08996 * 109.47259 * 301.45425 * 20 18 17 39 39 H 1.09004 * 109.47112 * 59.99981 * 21 20 18 40 40 H 1.09001 * 109.47332 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47234 * 299.99951 * 21 20 18 42 42 H 1.08990 * 109.47233 * 59.99558 * 22 20 18 43 43 H 1.08999 * 109.47042 * 179.97438 * 22 20 18 44 44 H 1.09004 * 109.47022 * 299.99643 * 22 20 18 45 45 H 1.08998 * 110.02909 * 240.71478 * 23 18 17 46 46 H 1.08997 * 110.03169 * 119.28001 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6165 1.9776 -0.8500 5 6 3.5433 1.4438 -0.1041 6 1 4.1384 1.8920 0.6779 7 6 4.1592 0.8728 -1.1976 8 7 3.4346 0.3274 -2.1500 9 14 6.0228 0.8737 -1.3263 10 1 6.5993 0.1444 -0.1683 11 1 6.4323 0.2046 -2.5871 12 1 6.5182 2.2738 -1.3259 13 7 1.6348 2.1051 1.2469 14 6 1.5634 3.5617 1.0699 15 1 2.3792 3.9084 0.4354 16 6 0.1964 3.9680 0.4656 17 6 0.0528 5.4454 0.9079 18 6 0.6387 5.4718 2.3347 19 6 -0.4840 5.3347 3.3650 20 6 1.4027 6.7776 2.5633 21 6 0.4431 7.9610 2.4242 22 6 2.0085 6.7746 3.9684 23 6 1.5993 4.2741 2.4377 24 1 -0.3634 0.4330 0.9320 25 1 -0.3634 0.5906 -0.8410 26 1 -0.3633 -1.0236 -0.0910 27 1 1.8934 -0.5138 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 3.8679 -0.0746 -2.9191 30 1 2.2568 1.8628 2.0036 31 1 0.2162 3.8904 -0.6214 32 1 -0.6063 3.3600 0.8828 33 1 0.6245 6.0984 0.2485 34 1 -0.9967 5.7393 0.9210 35 1 -1.0228 4.4028 3.1934 36 1 -0.0578 5.3285 4.3682 37 1 -1.1714 6.1750 3.2674 38 1 2.1991 6.8668 1.8245 39 1 -0.3533 7.8719 3.1631 40 1 0.9873 8.8912 2.5875 41 1 0.0116 7.9631 1.4233 42 1 2.6921 5.9315 4.0675 43 1 2.5532 7.7047 4.1311 44 1 1.2121 6.6855 4.7073 45 1 1.2656 3.5943 3.2217 46 1 2.6097 4.6231 2.6506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381388409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:49 Heat of formation + Delta-G solvation = -40.201828 kcal Electronic energy + Delta-G solvation = -20185.762024 eV Core-core repulsion = 17494.518871 eV Total energy + Delta-G solvation = -2691.243154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.45913 -36.15084 -33.88383 -31.81337 -30.68408 -29.12731 -28.18469 -26.66420 -25.88578 -24.46188 -22.56532 -21.38449 -19.56311 -19.22058 -17.90138 -16.47566 -15.62225 -15.19184 -14.55815 -14.42861 -13.85524 -13.58987 -13.33021 -13.07021 -12.80384 -12.59790 -12.36609 -12.07553 -11.78811 -11.66998 -11.36211 -11.24784 -11.20915 -11.06793 -10.88706 -10.76214 -10.63453 -10.42337 -10.23807 -10.05111 -9.97514 -9.94695 -9.88291 -9.51787 -9.33363 -8.97700 -8.33569 -7.17181 -5.95958 -4.08884 3.29169 3.34431 3.36783 4.41664 4.80402 4.82680 4.89107 5.25461 5.26556 5.33221 5.35051 5.63792 5.64647 5.69881 5.70819 5.74951 5.89666 5.92142 5.95357 6.07041 6.12110 6.17927 6.21410 6.24440 6.32106 6.41677 6.43601 6.51370 6.54770 6.55836 6.59902 6.76826 6.78419 6.82230 6.99149 7.19659 7.22819 7.51967 7.66598 7.82345 8.14778 8.23124 8.41889 8.75417 9.05338 9.58536 11.03786 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.005816 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.450144 B = 4813.224188 C = 5515.210781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.091 3.909 15 H 0.046 0.954 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.054 4.054 19 C -0.138 4.138 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.115 4.115 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.261 0.739 30 H 0.325 0.675 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 10.850 8.699 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.064 0.936 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.055 4.055 19 C -0.195 4.195 20 C -0.104 4.104 21 C -0.205 4.205 22 C -0.207 4.207 23 C -0.153 4.153 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.911 10.650 8.402 15.224 hybrid contribution 2.143 0.179 -0.254 2.165 sum -4.768 10.829 8.148 14.366 Atomic orbital electron populations 1.21679 0.99040 0.98109 1.00350 1.21491 0.92049 0.99418 1.01520 1.19138 0.92389 0.91026 0.86669 0.94993 1.21860 0.92881 1.37843 1.05729 0.93064 1.24926 0.97802 0.95079 0.95689 1.69870 1.34883 1.38081 1.09548 0.86748 0.86302 0.78128 0.77336 1.20320 1.21246 1.20474 1.60999 1.55606 1.05297 1.09255 1.22147 0.96001 0.89521 0.94341 0.93601 1.22462 0.98255 0.94181 0.99806 1.22451 0.99724 0.97639 0.95275 1.21084 0.95060 0.94062 0.95283 1.21965 0.97812 1.01362 0.98322 1.21198 0.97462 0.94414 0.97304 1.21897 0.99416 0.97379 1.01784 1.21936 1.00647 1.01300 0.96794 1.22446 0.98332 0.95985 0.98514 0.93484 0.94512 0.95840 0.95239 0.89328 0.92895 0.85841 0.92462 0.91284 0.92116 0.92343 0.92511 0.92891 0.93066 0.91370 0.92644 0.93388 0.92617 0.92369 0.93388 0.92630 0.91369 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.33 1.85 -68.87 -0.13 5.20 16 4 H 0.03 0.88 7.59 -51.93 -0.39 0.49 16 5 C -0.54 -14.71 8.27 -34.44 -0.28 -14.99 16 6 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.18 11.30 55.43 0.63 -24.56 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.21 5.54 -99.22 -0.55 -14.76 16 14 C 0.09 1.68 2.97 -66.05 -0.20 1.49 16 15 H 0.05 0.99 7.74 -51.93 -0.40 0.59 16 16 C -0.11 -1.84 6.26 -24.74 -0.15 -2.00 16 17 C -0.11 -1.55 4.82 -25.08 -0.12 -1.67 16 18 C -0.05 -0.70 0.43 -153.39 -0.07 -0.76 16 19 C -0.14 -1.59 7.43 37.16 0.28 -1.32 16 20 C -0.09 -0.99 1.97 -90.62 -0.18 -1.17 16 21 C -0.15 -1.49 8.63 37.15 0.32 -1.17 16 22 C -0.15 -1.60 8.61 37.16 0.32 -1.28 16 23 C -0.11 -1.74 5.07 -25.61 -0.13 -1.87 16 24 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.33 6.77 8.18 -39.29 -0.32 6.45 16 31 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.84 7.69 -51.93 -0.40 0.44 16 34 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.58 6.49 -51.93 -0.34 0.24 16 37 H 0.05 0.53 6.48 -51.93 -0.34 0.20 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.53 6.47 -51.93 -0.34 0.19 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.57 7.18 -51.93 -0.37 0.19 16 42 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.56 6.48 -51.93 -0.34 0.22 16 45 H 0.07 1.04 7.55 -51.93 -0.39 0.65 16 46 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -26.95 340.28 -8.81 -35.76 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.77 Total: 5.10 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -0.22 Total: -22.93 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.08 Total: -39.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.95 -8.81 -35.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381388409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.441 kcal (2) G-P(sol) polarization free energy of solvation -26.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds