Wall clock time and date at job start Mon Mar 30 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 H 1.09003 * 109.47276 * 304.19602 * 3 2 1 5 5 C 1.50701 * 109.46851 * 184.20207 * 3 2 1 6 6 H 1.08006 * 119.99929 * 240.00319 * 5 3 2 7 7 C 1.37879 * 120.00305 * 59.99905 * 5 3 2 8 8 N 1.31514 * 119.99788 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00243 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47021 * 59.99548 * 9 7 5 11 11 H 1.48491 * 109.47396 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46832 * 300.00091 * 9 7 5 13 13 N 1.46897 * 109.47542 * 64.19941 * 3 2 1 14 14 C 1.46899 * 111.00208 * 204.77452 * 13 3 2 15 15 H 1.09005 * 110.43422 * 321.22967 * 14 13 3 16 16 C 1.54885 * 110.48841 * 83.77153 * 14 13 3 17 17 C 1.54882 * 102.74772 * 156.62017 * 16 14 13 18 18 C 1.54264 * 104.19841 * 322.05499 * 17 16 14 19 19 C 1.52996 * 110.03631 * 264.27829 * 18 17 16 20 20 C 1.53003 * 110.02916 * 142.89576 * 18 17 16 21 21 C 1.52989 * 109.47387 * 61.45718 * 20 18 17 22 22 C 1.53008 * 109.46862 * 181.45987 * 20 18 17 23 23 C 1.53878 * 106.59770 * 23.61345 * 18 17 16 24 24 H 1.09004 * 109.47275 * 294.91986 * 1 2 3 25 25 H 1.09007 * 109.47457 * 54.92060 * 1 2 3 26 26 H 1.08997 * 109.47249 * 174.92067 * 1 2 3 27 27 H 1.08993 * 109.47279 * 120.00088 * 2 1 3 28 28 H 1.09000 * 109.46510 * 240.00433 * 2 1 3 29 29 H 0.96998 * 119.99855 * 180.02562 * 8 7 5 30 30 H 1.00908 * 110.99509 * 80.81910 * 13 3 2 31 31 H 1.08997 * 110.75525 * 274.93668 * 16 14 13 32 32 H 1.09000 * 110.75290 * 38.30258 * 16 14 13 33 33 H 1.08999 * 110.49140 * 80.74032 * 17 16 14 34 34 H 1.09003 * 110.48562 * 203.37939 * 17 16 14 35 35 H 1.09002 * 109.47215 * 58.54659 * 19 18 17 36 36 H 1.09002 * 109.47294 * 178.54382 * 19 18 17 37 37 H 1.09003 * 109.46971 * 298.54646 * 19 18 17 38 38 H 1.08996 * 109.47259 * 301.45425 * 20 18 17 39 39 H 1.09004 * 109.47112 * 59.99981 * 21 20 18 40 40 H 1.09001 * 109.47332 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47234 * 299.99951 * 21 20 18 42 42 H 1.08990 * 109.47233 * 59.99558 * 22 20 18 43 43 H 1.08999 * 109.47042 * 179.97438 * 22 20 18 44 44 H 1.09004 * 109.47022 * 299.99643 * 22 20 18 45 45 H 1.08998 * 110.02909 * 240.71478 * 23 18 17 46 46 H 1.08997 * 110.03169 * 119.28001 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6165 1.9776 -0.8500 5 6 3.5433 1.4438 -0.1041 6 1 4.1384 1.8920 0.6779 7 6 4.1592 0.8728 -1.1976 8 7 3.4346 0.3274 -2.1500 9 14 6.0228 0.8737 -1.3263 10 1 6.5993 0.1444 -0.1683 11 1 6.4323 0.2046 -2.5871 12 1 6.5182 2.2738 -1.3259 13 7 1.6348 2.1051 1.2469 14 6 1.5634 3.5617 1.0699 15 1 2.3792 3.9084 0.4354 16 6 0.1964 3.9680 0.4656 17 6 0.0528 5.4454 0.9079 18 6 0.6387 5.4718 2.3347 19 6 -0.4840 5.3347 3.3650 20 6 1.4027 6.7776 2.5633 21 6 0.4431 7.9610 2.4242 22 6 2.0085 6.7746 3.9684 23 6 1.5993 4.2741 2.4377 24 1 -0.3634 0.4330 0.9320 25 1 -0.3634 0.5906 -0.8410 26 1 -0.3633 -1.0236 -0.0910 27 1 1.8934 -0.5138 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 3.8679 -0.0746 -2.9191 30 1 2.2568 1.8628 2.0036 31 1 0.2162 3.8904 -0.6214 32 1 -0.6063 3.3600 0.8828 33 1 0.6245 6.0984 0.2485 34 1 -0.9967 5.7393 0.9210 35 1 -1.0228 4.4028 3.1934 36 1 -0.0578 5.3285 4.3682 37 1 -1.1714 6.1750 3.2674 38 1 2.1991 6.8668 1.8245 39 1 -0.3533 7.8719 3.1631 40 1 0.9873 8.8912 2.5875 41 1 0.0116 7.9631 1.4233 42 1 2.6921 5.9315 4.0675 43 1 2.5532 7.7047 4.1311 44 1 1.2121 6.6855 4.7073 45 1 1.2656 3.5943 3.2217 46 1 2.6097 4.6231 2.6506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381388409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:49 Heat of formation + Delta-G solvation = -53.797935 kcal Electronic energy + Delta-G solvation = -20186.351596 eV Core-core repulsion = 17494.518871 eV Total energy + Delta-G solvation = -2691.832725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64281 -37.84257 -35.35865 -33.71948 -32.27278 -30.22384 -29.53456 -28.01948 -27.26240 -25.81172 -24.42771 -22.47200 -21.35737 -20.82133 -19.02135 -18.50953 -16.96690 -16.65472 -16.32989 -15.62848 -15.19005 -14.95684 -14.93283 -14.52561 -14.09613 -13.87538 -13.63114 -13.27993 -13.26792 -13.06048 -12.92471 -12.77023 -12.61197 -12.56119 -12.28229 -12.19824 -12.03015 -11.88652 -11.63960 -11.59110 -11.44662 -11.32631 -11.14064 -11.04662 -10.94826 -10.79925 -10.45522 -9.01710 -8.05437 -6.28098 1.36768 1.37074 1.44926 2.38610 3.13315 3.63716 3.70246 3.81999 3.93867 4.24803 4.37810 4.52642 4.57904 4.59233 4.62732 4.67234 4.74866 4.76748 4.79833 4.86895 4.91571 4.96227 5.04996 5.10225 5.12617 5.16178 5.19052 5.20218 5.24869 5.33281 5.35608 5.39222 5.42783 5.45351 5.52159 5.54476 5.64866 5.67994 5.77256 5.81493 6.12899 6.22646 6.44336 6.87704 7.04974 7.43445 8.90451 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.005816 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.450144 B = 4813.224188 C = 5515.210781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.004 1.004 5 C -0.560 4.560 6 H 0.047 0.953 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.086 3.914 15 H 0.009 0.991 16 C -0.105 4.105 17 C -0.105 4.105 18 C -0.049 4.049 19 C -0.134 4.134 20 C -0.085 4.085 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.105 4.105 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.262 0.738 30 H 0.326 0.674 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 12.048 10.358 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.014 0.986 5 C -0.599 4.599 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.300 5.300 14 C -0.025 4.025 15 H 0.027 0.973 16 C -0.144 4.144 17 C -0.143 4.143 18 C -0.049 4.049 19 C -0.191 4.191 20 C -0.103 4.103 21 C -0.201 4.201 22 C -0.205 4.205 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.463 11.856 10.073 17.255 hybrid contribution 2.317 -0.192 -0.793 2.457 sum -5.146 11.664 9.281 15.769 Atomic orbital electron populations 1.21527 0.96355 0.99401 1.00573 1.21357 0.94433 0.98475 0.99881 1.18877 0.91144 0.91319 0.87027 0.98583 1.22167 0.94241 1.37727 1.05773 0.93525 1.25662 1.02105 0.94820 0.95432 1.70003 1.36483 1.38601 1.09914 0.85768 0.81150 0.78119 0.77532 1.19601 1.20739 1.20241 1.60970 1.54867 1.06642 1.07520 1.22220 0.95754 0.88278 0.96211 0.97332 1.22394 0.97035 0.96714 0.98234 1.22417 1.01112 0.94932 0.95795 1.21047 0.95106 0.93657 0.95112 1.21935 0.97321 1.01696 0.98129 1.21169 0.97304 0.94300 0.97555 1.21869 0.99337 0.96878 1.02055 1.21916 1.00851 1.01418 0.96274 1.22374 0.99222 0.96723 0.96003 0.92349 0.95278 0.93795 0.95400 0.92289 0.92908 0.85787 0.94798 0.91273 0.92381 0.90270 0.93339 0.91908 0.91314 0.93020 0.91510 0.92463 0.92806 0.93434 0.92385 0.91495 0.90998 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.73 71.98 0.70 -4.32 16 2 C -0.10 -5.06 5.45 30.59 0.17 -4.90 16 3 C 0.23 11.51 1.85 44.17 0.08 11.59 16 4 H 0.00 -0.22 7.59 -2.39 -0.02 -0.24 16 5 C -0.56 -31.11 8.27 25.60 0.21 -30.90 16 6 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -53.13 11.30 21.45 0.24 -52.89 16 9 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 N -0.67 -28.51 5.54 -467.82 -2.59 -31.10 16 14 C 0.09 3.27 2.97 45.99 0.14 3.41 16 15 H 0.01 0.39 7.74 -2.38 -0.02 0.37 16 16 C -0.11 -3.62 6.26 31.88 0.20 -3.42 16 17 C -0.10 -2.76 4.82 31.67 0.15 -2.61 16 18 C -0.05 -1.16 0.43 -51.46 -0.02 -1.19 16 19 C -0.13 -2.69 7.43 71.98 0.53 -2.16 16 20 C -0.08 -1.80 1.97 -10.79 -0.02 -1.82 16 21 C -0.14 -2.49 8.63 71.98 0.62 -1.87 16 22 C -0.15 -2.79 8.61 71.98 0.62 -2.17 16 23 C -0.11 -3.13 5.07 31.32 0.16 -2.97 16 24 H 0.06 2.26 7.87 -2.38 -0.02 2.24 16 25 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 3.27 5.97 -2.39 -0.01 3.26 16 29 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.33 13.71 8.18 -89.69 -0.73 12.97 16 31 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 1.56 7.69 -2.39 -0.02 1.54 16 34 H 0.08 1.79 7.84 -2.39 -0.02 1.77 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.15 6.49 -2.39 -0.02 1.14 16 37 H 0.07 1.16 6.48 -2.39 -0.02 1.15 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.01 6.47 -2.38 -0.02 1.00 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 0.95 7.18 -2.39 -0.02 0.93 16 42 H 0.05 0.99 6.56 -2.39 -0.02 0.98 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.12 6.48 -2.38 -0.02 1.10 16 45 H 0.07 2.09 7.55 -2.39 -0.02 2.08 16 46 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 Total: -1.00 -58.94 340.28 3.85 -55.09 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.18 Total: 24.43 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 3.99 Total: -41.76 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.35 Total: -84.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -58.94 3.85 -55.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381388409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.294 kcal (2) G-P(sol) polarization free energy of solvation -58.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds