Wall clock time and date at job start Mon Mar 30 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46843 * 2 1 4 4 C 1.52995 * 109.47519 * 120.00075 * 2 1 3 5 5 H 1.08998 * 109.47195 * 185.34538 * 4 2 1 6 6 C 1.53006 * 109.47098 * 305.34707 * 4 2 1 7 7 C 1.52995 * 109.47098 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47074 * 299.99797 * 7 6 4 9 9 H 1.09000 * 109.47631 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47052 * 300.00094 * 8 7 6 11 11 C 1.53003 * 109.47266 * 59.99894 * 8 7 6 12 12 C 1.52994 * 109.47288 * 300.00426 * 11 8 7 13 13 H 1.09000 * 109.47333 * 299.99596 * 12 11 8 14 14 N 1.46898 * 109.47230 * 179.97438 * 12 11 8 15 15 C 1.46895 * 111.00373 * 83.44945 * 14 12 11 16 16 H 1.09001 * 109.46589 * 324.99976 * 15 14 12 17 17 C 1.53000 * 109.47437 * 84.99977 * 15 14 12 18 18 C 1.50696 * 109.47356 * 205.00310 * 15 14 12 19 19 H 1.08004 * 120.00075 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00424 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00414 * 180.27584 * 20 18 15 22 22 Si 1.86803 * 119.99739 * 359.97438 * 20 18 15 23 23 H 1.48498 * 109.47234 * 90.00359 * 22 20 18 24 24 H 1.48502 * 109.47314 * 210.00252 * 22 20 18 25 25 H 1.48504 * 109.47095 * 330.00156 * 22 20 18 26 26 H 1.09001 * 109.47197 * 299.99681 * 1 2 3 27 27 H 1.08999 * 109.47326 * 60.00233 * 1 2 3 28 28 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47197 * 240.00319 * 2 1 3 30 30 H 1.09000 * 109.46901 * 62.24396 * 3 2 1 31 31 H 1.09007 * 109.46638 * 182.24285 * 3 2 1 32 32 H 1.08997 * 109.47129 * 302.24394 * 3 2 1 33 33 H 1.09000 * 109.46940 * 59.99418 * 6 4 2 34 34 H 1.08999 * 109.46429 * 299.99894 * 6 4 2 35 35 H 1.09002 * 109.47283 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47722 * 59.99337 * 7 6 4 37 37 H 1.09004 * 109.47246 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47459 * 300.00108 * 10 8 7 39 39 H 1.08999 * 109.47092 * 60.00344 * 10 8 7 40 40 H 1.08990 * 109.47279 * 180.02562 * 11 8 7 41 41 H 1.09000 * 109.46604 * 60.00468 * 11 8 7 42 42 H 1.00901 * 110.99980 * 207.40427 * 14 12 11 43 43 H 1.09000 * 109.47262 * 180.02562 * 17 15 14 44 44 H 1.09005 * 109.46953 * 300.00380 * 17 15 14 45 45 H 1.08992 * 109.47045 * 59.99818 * 17 15 14 46 46 H 0.97003 * 119.99999 * 179.72598 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1258 -0.6390 1.2983 6 6 1.4232 -0.0818 2.4949 7 6 1.9328 -0.8034 3.7440 8 6 1.5350 -2.2794 3.6783 9 1 1.8976 -2.7935 4.5684 10 6 0.0109 -2.3941 3.6090 11 6 2.1517 -2.9188 2.4326 12 6 1.6422 -2.1972 1.1834 13 1 0.5564 -2.2789 1.1340 14 7 2.2348 -2.8107 -0.0125 15 6 1.4770 -3.9997 -0.4247 16 1 1.1012 -4.5154 0.4591 17 6 0.3007 -3.5747 -1.3059 18 6 2.3777 -4.9253 -1.2012 19 1 3.4098 -4.6569 -1.3719 20 6 1.8840 -6.1142 -1.6947 21 7 2.6715 -6.9245 -2.3677 22 14 0.0987 -6.5782 -1.4001 23 1 -0.7380 -6.0569 -2.5107 24 1 -0.0250 -8.0568 -1.3392 25 1 -0.3603 -5.9897 -0.1162 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7097 1.9446 0.9094 31 1 3.1292 1.4428 -0.0402 32 1 1.6441 1.9679 -0.8692 33 1 0.3375 -0.1639 2.4457 34 1 1.7063 0.9698 2.5413 35 1 1.4931 -0.3482 4.6314 36 1 3.0187 -0.7217 3.7934 37 1 -0.2725 -3.4456 3.5617 38 1 -0.4285 -1.9386 4.4964 39 1 -0.3521 -1.8801 2.7191 40 1 1.8679 -3.9701 2.3855 41 1 3.2375 -2.8371 2.4820 42 1 2.2994 -2.1437 -0.7669 43 1 -0.2618 -4.4570 -1.6114 44 1 -0.3508 -2.9053 -0.7442 45 1 0.6765 -3.0591 -2.1896 46 1 2.3251 -7.7628 -2.7115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381526132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:47 Heat of formation + Delta-G solvation = -26.370336 kcal Electronic energy + Delta-G solvation = -20865.653198 eV Core-core repulsion = 18175.009823 eV Total energy + Delta-G solvation = -2690.643375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90994 -35.71187 -35.34174 -32.35474 -30.31142 -30.15933 -27.23191 -26.97783 -26.24921 -25.00472 -23.28749 -21.56853 -19.85489 -19.33983 -18.09167 -16.77745 -15.64601 -15.11779 -14.79084 -14.63905 -14.30143 -13.94113 -13.42577 -13.29443 -12.95005 -12.74637 -12.44807 -12.34451 -12.25255 -12.06113 -11.77089 -11.73066 -11.32813 -11.22495 -11.07797 -10.91960 -10.76792 -10.63104 -10.48786 -10.40387 -10.08377 -9.89741 -9.76481 -9.54735 -9.33595 -9.00394 -8.52256 -7.27969 -6.00014 -3.96381 3.27719 3.37952 3.40500 4.44192 4.75217 4.83659 4.86480 5.02868 5.14723 5.20699 5.30587 5.35951 5.48120 5.54363 5.59715 5.71464 5.72300 5.75544 5.79546 5.86723 5.90895 5.96929 6.00957 6.07325 6.11869 6.13696 6.23695 6.26409 6.29999 6.33932 6.37535 6.43110 6.54238 6.55436 6.58142 6.66248 6.74472 6.83018 6.92513 7.19558 7.79932 8.04125 8.46973 8.77302 9.12196 9.63604 11.13773 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022587 B = 0.007144 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.344307 B = 3918.665434 C = 4398.295866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.081 4.081 5 H 0.075 0.925 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.092 4.092 9 H 0.064 0.936 10 C -0.150 4.150 11 C -0.102 4.102 12 C 0.091 3.909 13 H 0.040 0.960 14 N -0.671 5.671 15 C 0.184 3.816 16 H 0.033 0.967 17 C -0.182 4.182 18 C -0.494 4.494 19 H 0.081 0.919 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.884 3.116 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.270 1.270 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.330 0.670 43 H 0.043 0.957 44 H 0.026 0.974 45 H 0.052 0.948 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 14.970 10.004 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.100 4.100 5 H 0.093 0.907 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.111 4.111 9 H 0.083 0.917 10 C -0.208 4.208 11 C -0.140 4.140 12 C -0.020 4.020 13 H 0.058 0.942 14 N -0.302 5.302 15 C 0.075 3.925 16 H 0.051 0.949 17 C -0.241 4.241 18 C -0.533 4.533 19 H 0.099 0.901 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.195 1.195 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.434 14.431 10.252 18.249 hybrid contribution -1.865 -0.060 -0.425 1.914 sum -6.299 14.371 9.827 18.514 Atomic orbital electron populations 1.21993 0.95768 1.02068 1.01141 1.21184 0.95659 0.95986 0.98783 1.21854 1.00898 0.96199 1.01235 1.21296 1.00548 0.94472 0.93642 0.90709 1.21697 1.00765 0.98654 0.94197 1.21552 1.00688 0.95341 0.97384 1.21124 0.95644 0.95740 0.98570 0.91738 1.21941 0.95875 1.01616 1.01332 1.21545 1.00522 0.99449 0.92469 1.21513 0.96486 0.91687 0.92265 0.94248 1.60656 1.53960 1.09034 1.06577 1.19627 0.89885 0.88952 0.94021 0.94943 1.22893 1.00330 0.99780 1.01101 1.21019 0.98470 1.01717 1.32094 0.90119 1.24937 0.97129 0.96371 0.95018 1.69887 1.35539 1.11325 1.37459 0.86921 0.86302 0.76384 0.78849 1.20908 1.22529 1.19510 0.92646 0.93232 0.92286 0.90724 0.92775 0.92771 0.93159 0.91577 0.92273 0.92711 0.92140 0.92924 0.93451 0.92129 0.91846 0.91591 0.84969 0.93871 0.95480 0.92909 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.45 37.15 0.31 -1.55 16 2 C -0.10 -1.23 2.56 -90.62 -0.23 -1.46 16 3 C -0.14 -1.54 9.01 37.16 0.33 -1.20 16 4 C -0.08 -1.08 1.63 -90.62 -0.15 -1.23 16 5 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 6 C -0.12 -1.31 4.19 -26.73 -0.11 -1.43 16 7 C -0.11 -1.27 5.45 -26.73 -0.15 -1.41 16 8 C -0.09 -1.18 3.19 -90.62 -0.29 -1.47 16 9 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 10 C -0.15 -1.89 8.50 37.16 0.32 -1.57 16 11 C -0.10 -1.64 4.92 -26.73 -0.13 -1.78 16 12 C 0.09 1.48 1.28 -67.71 -0.09 1.39 16 13 H 0.04 0.67 3.85 -51.93 -0.20 0.47 16 14 N -0.67 -13.46 6.03 -100.96 -0.61 -14.07 16 15 C 0.18 4.33 1.98 -68.87 -0.14 4.20 16 16 H 0.03 0.81 6.06 -51.93 -0.31 0.49 16 17 C -0.18 -3.95 8.63 37.16 0.32 -3.63 16 18 C -0.49 -14.05 9.42 -34.44 -0.32 -14.38 16 19 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 20 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 21 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 22 Si 0.88 22.29 24.37 -169.99 -4.14 18.15 16 23 H -0.28 -6.94 6.87 56.52 0.39 -6.55 16 24 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 26 H 0.05 0.61 6.34 -51.93 -0.33 0.28 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.82 5.15 -51.93 -0.27 0.55 16 29 H 0.07 1.06 6.02 -51.93 -0.31 0.75 16 30 H 0.05 0.53 6.47 -51.93 -0.34 0.19 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.76 4.63 -51.93 -0.24 0.52 16 34 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 40 H 0.06 1.17 7.31 -51.93 -0.38 0.79 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.33 6.33 5.85 -39.29 -0.23 6.10 16 43 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 44 H 0.03 0.51 5.99 -51.93 -0.31 0.19 16 45 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -29.48 317.74 -7.54 -37.02 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.93 Total: 5.03 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -0.42 Total: -23.68 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.16 Total: -41.31 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.48 -7.54 -37.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381526132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.654 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds