Wall clock time and date at job start Mon Mar 30 2020 06:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46843 * 2 1 4 4 C 1.52995 * 109.47519 * 120.00075 * 2 1 3 5 5 H 1.08998 * 109.47195 * 185.34538 * 4 2 1 6 6 C 1.53006 * 109.47098 * 305.34707 * 4 2 1 7 7 C 1.52995 * 109.47098 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47074 * 299.99797 * 7 6 4 9 9 H 1.09000 * 109.47631 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47052 * 300.00094 * 8 7 6 11 11 C 1.53003 * 109.47266 * 59.99894 * 8 7 6 12 12 C 1.52994 * 109.47288 * 300.00426 * 11 8 7 13 13 H 1.09000 * 109.47333 * 299.99596 * 12 11 8 14 14 N 1.46898 * 109.47230 * 179.97438 * 12 11 8 15 15 C 1.46895 * 111.00373 * 83.44945 * 14 12 11 16 16 H 1.09001 * 109.46589 * 324.99976 * 15 14 12 17 17 C 1.53000 * 109.47437 * 84.99977 * 15 14 12 18 18 C 1.50696 * 109.47356 * 205.00310 * 15 14 12 19 19 H 1.08004 * 120.00075 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00424 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00414 * 180.27584 * 20 18 15 22 22 Si 1.86803 * 119.99739 * 359.97438 * 20 18 15 23 23 H 1.48498 * 109.47234 * 90.00359 * 22 20 18 24 24 H 1.48502 * 109.47314 * 210.00252 * 22 20 18 25 25 H 1.48504 * 109.47095 * 330.00156 * 22 20 18 26 26 H 1.09001 * 109.47197 * 299.99681 * 1 2 3 27 27 H 1.08999 * 109.47326 * 60.00233 * 1 2 3 28 28 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47197 * 240.00319 * 2 1 3 30 30 H 1.09000 * 109.46901 * 62.24396 * 3 2 1 31 31 H 1.09007 * 109.46638 * 182.24285 * 3 2 1 32 32 H 1.08997 * 109.47129 * 302.24394 * 3 2 1 33 33 H 1.09000 * 109.46940 * 59.99418 * 6 4 2 34 34 H 1.08999 * 109.46429 * 299.99894 * 6 4 2 35 35 H 1.09002 * 109.47283 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47722 * 59.99337 * 7 6 4 37 37 H 1.09004 * 109.47246 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47459 * 300.00108 * 10 8 7 39 39 H 1.08999 * 109.47092 * 60.00344 * 10 8 7 40 40 H 1.08990 * 109.47279 * 180.02562 * 11 8 7 41 41 H 1.09000 * 109.46604 * 60.00468 * 11 8 7 42 42 H 1.00901 * 110.99980 * 207.40427 * 14 12 11 43 43 H 1.09000 * 109.47262 * 180.02562 * 17 15 14 44 44 H 1.09005 * 109.46953 * 300.00380 * 17 15 14 45 45 H 1.08992 * 109.47045 * 59.99818 * 17 15 14 46 46 H 0.97003 * 119.99999 * 179.72598 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1258 -0.6390 1.2983 6 6 1.4232 -0.0818 2.4949 7 6 1.9328 -0.8034 3.7440 8 6 1.5350 -2.2794 3.6783 9 1 1.8976 -2.7935 4.5684 10 6 0.0109 -2.3941 3.6090 11 6 2.1517 -2.9188 2.4326 12 6 1.6422 -2.1972 1.1834 13 1 0.5564 -2.2789 1.1340 14 7 2.2348 -2.8107 -0.0125 15 6 1.4770 -3.9997 -0.4247 16 1 1.1012 -4.5154 0.4591 17 6 0.3007 -3.5747 -1.3059 18 6 2.3777 -4.9253 -1.2012 19 1 3.4098 -4.6569 -1.3719 20 6 1.8840 -6.1142 -1.6947 21 7 2.6715 -6.9245 -2.3677 22 14 0.0987 -6.5782 -1.4001 23 1 -0.7380 -6.0569 -2.5107 24 1 -0.0250 -8.0568 -1.3392 25 1 -0.3603 -5.9897 -0.1162 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7097 1.9446 0.9094 31 1 3.1292 1.4428 -0.0402 32 1 1.6441 1.9679 -0.8692 33 1 0.3375 -0.1639 2.4457 34 1 1.7063 0.9698 2.5413 35 1 1.4931 -0.3482 4.6314 36 1 3.0187 -0.7217 3.7934 37 1 -0.2725 -3.4456 3.5617 38 1 -0.4285 -1.9386 4.4964 39 1 -0.3521 -1.8801 2.7191 40 1 1.8679 -3.9701 2.3855 41 1 3.2375 -2.8371 2.4820 42 1 2.2994 -2.1437 -0.7669 43 1 -0.2618 -4.4570 -1.6114 44 1 -0.3508 -2.9053 -0.7442 45 1 0.6765 -3.0591 -2.1896 46 1 2.3251 -7.7628 -2.7115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381526132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:46 Heat of formation + Delta-G solvation = -44.708882 kcal Electronic energy + Delta-G solvation = -20866.448417 eV Core-core repulsion = 18175.009823 eV Total energy + Delta-G solvation = -2691.438594 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07217 -37.31255 -36.43565 -34.39388 -31.95219 -31.14433 -28.46243 -28.15239 -27.28763 -27.07582 -24.32600 -22.96930 -21.56753 -20.38740 -19.26482 -18.73591 -17.07479 -16.89995 -15.97021 -15.84612 -15.55205 -15.17438 -14.82567 -14.78018 -14.47126 -13.99329 -13.92154 -13.63726 -13.53476 -13.29105 -13.11555 -12.98594 -12.68626 -12.55021 -12.37164 -12.15239 -12.10526 -11.89725 -11.76520 -11.63836 -11.56876 -11.44027 -11.17847 -10.93319 -10.75999 -10.68757 -10.60789 -8.90574 -8.27705 -6.29057 1.25849 1.31992 1.41886 2.30373 3.06500 3.46973 3.77238 3.80901 3.96844 4.16361 4.22839 4.23347 4.43074 4.45466 4.50690 4.52193 4.58805 4.61994 4.67409 4.72357 4.75797 4.83890 4.90006 4.91155 4.97179 5.04546 5.07735 5.10496 5.15979 5.18805 5.26954 5.32498 5.35886 5.38451 5.41805 5.46760 5.50850 5.57979 5.62735 5.70921 5.72809 6.11834 6.76526 6.77477 6.87878 7.36228 8.89989 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022587 B = 0.007144 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.344307 B = 3918.665434 C = 4398.295866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.074 4.074 5 H 0.063 0.937 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.088 4.088 9 H 0.071 0.929 10 C -0.149 4.149 11 C -0.103 4.103 12 C 0.093 3.907 13 H 0.040 0.960 14 N -0.685 5.685 15 C 0.193 3.807 16 H 0.022 0.978 17 C -0.175 4.175 18 C -0.501 4.501 19 H 0.034 0.966 20 C 0.009 3.991 21 N -0.952 5.952 22 Si 0.950 3.050 23 H -0.266 1.266 24 H -0.298 1.298 25 H -0.253 1.253 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.334 0.666 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 17.443 11.650 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.093 4.093 5 H 0.081 0.919 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.107 4.107 9 H 0.089 0.911 10 C -0.206 4.206 11 C -0.141 4.141 12 C -0.016 4.016 13 H 0.058 0.942 14 N -0.317 5.317 15 C 0.083 3.917 16 H 0.040 0.960 17 C -0.234 4.234 18 C -0.540 4.540 19 H 0.052 0.948 20 C -0.188 4.188 21 N -0.593 5.593 22 Si 0.777 3.223 23 H -0.193 1.193 24 H -0.226 1.226 25 H -0.178 1.178 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.155 0.845 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.734 16.935 11.910 21.772 hybrid contribution -1.004 -0.818 -0.933 1.596 sum -7.738 16.118 10.977 20.980 Atomic orbital electron populations 1.21965 0.95047 1.01177 1.02446 1.21161 0.96226 0.97025 0.97240 1.21807 1.00743 0.94699 1.02408 1.21230 1.00068 0.92412 0.95573 0.91859 1.21688 1.00880 0.99512 0.92697 1.21544 1.00853 0.93841 0.98384 1.21098 0.95913 0.96948 0.96696 0.91105 1.21926 0.95323 1.00982 1.02349 1.21547 0.99934 0.98038 0.94569 1.21579 0.96159 0.93592 0.90269 0.94249 1.60515 1.54394 1.08757 1.08024 1.19327 0.89858 0.89468 0.93044 0.96044 1.22738 0.99637 0.99949 1.01031 1.21318 0.97322 1.03018 1.32305 0.94790 1.25785 1.01980 0.96253 0.94745 1.70048 1.37984 1.12071 1.39181 0.85850 0.80635 0.75960 0.79846 1.19260 1.22576 1.17780 0.90873 0.92461 0.94140 0.92993 0.91184 0.93034 0.92423 0.90959 0.90178 0.90281 0.92277 0.94291 0.91029 0.92422 0.95036 0.92992 0.84514 0.94823 0.92328 0.92835 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.45 71.98 0.61 -2.60 16 2 C -0.10 -2.27 2.56 -10.79 -0.03 -2.30 16 3 C -0.14 -2.57 9.01 71.99 0.65 -1.92 16 4 C -0.07 -1.85 1.63 -10.79 -0.02 -1.87 16 5 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 6 C -0.11 -2.11 4.19 30.59 0.13 -1.99 16 7 C -0.11 -2.10 5.45 30.59 0.17 -1.93 16 8 C -0.09 -2.09 3.19 -10.79 -0.03 -2.13 16 9 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 10 C -0.15 -3.34 8.50 71.98 0.61 -2.73 16 11 C -0.10 -3.33 4.92 30.59 0.15 -3.18 16 12 C 0.09 3.00 1.28 44.91 0.06 3.06 16 13 H 0.04 1.29 3.85 -2.39 -0.01 1.28 16 14 N -0.68 -28.03 6.03 -473.33 -2.86 -30.89 16 15 C 0.19 9.18 1.98 44.17 0.09 9.27 16 16 H 0.02 1.08 6.06 -2.39 -0.01 1.07 16 17 C -0.17 -7.36 8.63 71.98 0.62 -6.74 16 18 C -0.50 -29.61 9.42 25.60 0.24 -29.37 16 19 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 20 C 0.01 0.53 5.45 84.65 0.46 0.99 16 21 N -0.95 -61.17 13.96 21.44 0.30 -60.87 16 22 Si 0.95 46.29 24.37 68.60 1.67 47.96 16 23 H -0.27 -12.29 6.87 99.48 0.68 -11.60 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 26 H 0.07 1.31 6.34 -2.39 -0.02 1.30 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 1.01 5.15 -2.39 -0.01 1.00 16 29 H 0.05 1.44 6.02 -2.39 -0.01 1.43 16 30 H 0.07 1.08 6.47 -2.39 -0.02 1.06 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.34 4.63 -2.39 -0.01 1.33 16 34 H 0.08 1.27 6.53 -2.39 -0.02 1.25 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.32 4.81 -2.39 -0.01 1.31 16 40 H 0.03 1.19 7.31 -2.39 -0.02 1.17 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.33 13.07 5.85 -89.69 -0.52 12.55 16 43 H 0.03 1.47 3.27 -2.39 -0.01 1.47 16 44 H 0.06 2.08 5.99 -2.38 -0.01 2.07 16 45 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 46 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -66.20 317.74 3.17 -63.03 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.35 Total: 24.23 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 3.70 Total: -43.46 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -2.56 Total: -91.76 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -66.20 3.17 -63.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381526132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.325 kcal (2) G-P(sol) polarization free energy of solvation -66.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds