Wall clock time and date at job start Mon Mar 30 2020 06:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47546 * 2 1 4 4 C 1.53001 * 109.47081 * 120.00588 * 2 1 3 5 5 H 1.08995 * 109.46734 * 299.99279 * 4 2 1 6 6 C 1.52997 * 109.47080 * 59.99500 * 4 2 1 7 7 C 1.53009 * 109.46689 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47110 * 300.00208 * 7 6 4 9 9 H 1.09000 * 109.46662 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46873 * 299.99798 * 8 7 6 11 11 C 1.52996 * 109.47489 * 59.99908 * 8 7 6 12 12 C 1.53001 * 109.46791 * 179.97438 * 4 2 1 13 13 H 1.08996 * 109.47267 * 59.99639 * 12 4 2 14 14 N 1.46898 * 109.47120 * 299.99608 * 12 4 2 15 15 C 1.46904 * 111.00137 * 134.81879 * 14 12 4 16 16 H 1.09000 * 109.46930 * 326.30930 * 15 14 12 17 17 C 1.53004 * 109.46787 * 86.30891 * 15 14 12 18 18 C 1.50702 * 109.47121 * 206.30579 * 15 14 12 19 19 H 1.07991 * 120.00135 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99731 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99973 * 180.02562 * 20 18 15 22 22 Si 1.86809 * 120.00042 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47192 * 89.99886 * 22 20 18 24 24 H 1.48504 * 109.46947 * 209.99896 * 22 20 18 25 25 H 1.48499 * 109.46740 * 329.99560 * 22 20 18 26 26 H 1.09001 * 109.47472 * 59.99596 * 1 2 3 27 27 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46524 * 299.99941 * 1 2 3 29 29 H 1.09003 * 109.46524 * 240.00059 * 2 1 3 30 30 H 1.08997 * 109.47352 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47065 * 300.00653 * 3 2 1 32 32 H 1.09007 * 109.46810 * 60.00084 * 3 2 1 33 33 H 1.08997 * 109.47377 * 299.99544 * 6 4 2 34 34 H 1.08998 * 109.47167 * 60.00624 * 6 4 2 35 35 H 1.08995 * 109.46807 * 59.99974 * 7 6 4 36 36 H 1.08998 * 109.46653 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.47092 * 47.65054 * 10 8 7 38 38 H 1.09004 * 109.46768 * 167.64625 * 10 8 7 39 39 H 1.08997 * 109.47225 * 287.64798 * 10 8 7 40 40 H 1.08998 * 109.47431 * 179.97438 * 11 8 7 41 41 H 1.09007 * 109.46810 * 59.99695 * 11 8 7 42 42 H 1.00900 * 111.00146 * 10.86669 * 14 12 4 43 43 H 1.08997 * 109.47031 * 185.18152 * 17 15 14 44 44 H 1.08997 * 109.47033 * 305.18036 * 17 15 14 45 45 H 1.09003 * 109.47268 * 65.18364 * 17 15 14 46 46 H 0.97006 * 119.99990 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6768 -0.2075 2.1391 6 6 1.5299 -2.1638 1.2491 7 6 2.0405 -2.8853 2.4980 8 6 3.5705 -2.8854 2.4973 9 1 3.9342 -3.3998 3.3868 10 6 4.0799 -3.6065 1.2477 11 6 4.0806 -1.4429 2.4973 12 6 3.5700 -0.7219 1.2488 13 1 3.9337 0.3056 1.2486 14 7 4.0591 -1.4147 0.0493 15 6 5.1461 -0.6597 -0.5883 16 1 4.9717 0.4083 -0.4581 17 6 6.4794 -1.0412 0.0581 18 6 5.1892 -0.9862 -2.0589 19 1 4.4799 -1.6844 -2.4780 20 6 6.1343 -0.3936 -2.8691 21 7 6.1717 -0.6782 -4.1526 22 14 7.3619 0.8134 -2.1439 23 1 8.5708 0.0788 -1.6923 24 1 7.7450 1.8100 -3.1762 25 1 6.7454 1.5111 -0.9870 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 0.4399 -2.1638 1.2492 34 1 1.8933 -2.6776 0.3591 35 1 1.6776 -2.3716 3.3882 36 1 1.6775 -3.9131 2.4977 37 1 3.5479 -3.2352 0.3718 38 1 5.1474 -3.4200 1.1304 39 1 3.9073 -4.6777 1.3507 40 1 5.1706 -1.4430 2.4973 41 1 3.7176 -0.9292 3.3876 42 1 3.3073 -1.5854 -0.6016 43 1 7.2732 -0.4157 -0.3501 44 1 6.4167 -0.8913 1.1359 45 1 6.6982 -2.0884 -0.1510 46 1 6.8364 -0.2610 -4.7227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381526134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:56 Heat of formation + Delta-G solvation = -13.349928 kcal Electronic energy + Delta-G solvation = -21206.427873 eV Core-core repulsion = 18516.349105 eV Total energy + Delta-G solvation = -2690.078768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94096 -35.28111 -35.12368 -32.22673 -30.19597 -30.16872 -27.83451 -26.92726 -25.74969 -24.91028 -22.27924 -21.53644 -20.16144 -19.20584 -18.01847 -16.82332 -15.88860 -15.26010 -14.53184 -14.35713 -13.93306 -13.44582 -13.25340 -13.07852 -13.04723 -12.73459 -12.33086 -12.13196 -11.98609 -11.85579 -11.63686 -11.49144 -11.06164 -11.05559 -11.03146 -10.74842 -10.64142 -10.38129 -10.28104 -10.10587 -10.09685 -9.93963 -9.58969 -9.52387 -9.27844 -8.87745 -8.56407 -7.13366 -6.07501 -4.06273 3.28581 3.37742 3.39755 4.40679 4.89173 4.92876 5.00641 5.19606 5.27418 5.35978 5.41621 5.46034 5.64188 5.74245 5.77279 5.82858 5.90101 5.91729 5.95867 6.06614 6.10794 6.14139 6.20156 6.29331 6.33574 6.39853 6.42366 6.44428 6.55284 6.57241 6.61565 6.63722 6.69499 6.77844 6.79870 6.87544 6.91231 7.01634 7.43403 7.51325 7.64941 8.04227 8.43096 8.66892 8.97995 9.56071 11.05540 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.008323 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.490883 B = 3363.391957 C = 3986.624026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.088 4.088 5 H 0.064 0.936 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.079 4.079 9 H 0.049 0.951 10 C -0.133 4.133 11 C -0.102 4.102 12 C 0.087 3.913 13 H 0.049 0.951 14 N -0.660 5.660 15 C 0.180 3.820 16 H 0.000 1.000 17 C -0.137 4.137 18 C -0.515 4.515 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.900 5.900 22 Si 0.889 3.111 23 H -0.280 1.280 24 H -0.300 1.300 25 H -0.269 1.269 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.339 0.661 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.056 0.944 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 -0.226 12.401 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.107 4.107 5 H 0.082 0.918 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.098 4.098 9 H 0.067 0.933 10 C -0.190 4.190 11 C -0.140 4.140 12 C -0.024 4.024 13 H 0.067 0.933 14 N -0.294 5.294 15 C 0.071 3.929 16 H 0.017 0.983 17 C -0.195 4.195 18 C -0.553 4.553 19 H 0.095 0.905 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.228 1.228 25 H -0.195 1.195 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.160 0.840 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.333 -0.596 12.559 15.084 hybrid contribution 0.415 1.441 -0.055 1.501 sum -7.918 0.845 12.504 14.824 Atomic orbital electron populations 1.21860 0.95767 1.01467 1.01054 1.21191 0.95167 0.96428 0.98815 1.21878 1.01962 0.95887 1.00775 1.21474 0.95883 0.95801 0.97522 0.91768 1.21647 0.99125 0.95283 0.99140 1.21513 0.96231 0.99423 0.97515 1.20935 0.94327 0.95989 0.98545 0.93301 1.22106 1.02594 0.95590 0.98754 1.21643 1.00553 0.95508 0.96286 1.21626 0.92210 0.95898 0.92644 0.93295 1.61167 1.13182 1.47032 1.07981 1.19652 0.88319 0.91102 0.93826 0.98254 1.22124 0.98512 1.01301 0.97550 1.21120 1.17229 1.26740 0.90210 0.90540 1.24912 0.97196 0.96224 0.94679 1.69896 1.35729 1.43758 1.04431 0.86831 0.82034 0.81073 0.78010 1.20705 1.22769 1.19482 0.93091 0.92541 0.93318 0.90321 0.91932 0.92997 0.93529 0.92675 0.90689 0.93197 0.92800 0.88728 0.92619 0.96575 0.91933 0.93582 0.83959 0.95107 0.95251 0.92488 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.84 37.16 0.33 -1.39 16 2 C -0.10 -1.37 2.32 -90.62 -0.21 -1.58 16 3 C -0.15 -2.16 8.84 37.16 0.33 -1.84 16 4 C -0.09 -1.20 1.52 -90.62 -0.14 -1.34 16 5 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.11 -1.48 4.49 -26.73 -0.12 -1.60 16 7 C -0.11 -1.37 5.45 -26.73 -0.15 -1.51 16 8 C -0.08 -1.11 3.19 -90.62 -0.29 -1.40 16 9 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 10 C -0.13 -2.12 7.75 37.16 0.29 -1.84 16 11 C -0.10 -1.51 5.25 -26.76 -0.14 -1.65 16 12 C 0.09 1.39 1.90 -67.74 -0.13 1.26 16 13 H 0.05 0.86 5.47 -51.93 -0.28 0.57 16 14 N -0.66 -12.31 2.31 -100.98 -0.23 -12.54 16 15 C 0.18 4.07 2.15 -68.86 -0.15 3.92 16 16 H 0.00 0.00 5.54 -51.93 -0.29 -0.29 16 17 C -0.14 -3.01 8.86 37.16 0.33 -2.68 16 18 C -0.51 -13.92 9.17 -34.44 -0.32 -14.23 16 19 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 20 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 21 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 22 Si 0.89 22.12 24.32 -169.99 -4.13 17.99 16 23 H -0.28 -6.87 6.92 56.52 0.39 -6.48 16 24 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.29 6.42 -51.93 -0.33 0.95 16 30 H 0.06 1.05 5.57 -51.93 -0.29 0.76 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.07 1.07 5.28 -51.93 -0.27 0.80 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.61 3.53 -51.93 -0.18 1.42 16 38 H 0.05 0.99 8.01 -51.93 -0.42 0.57 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 1.01 6.37 -51.93 -0.33 0.68 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.34 6.47 4.43 -39.29 -0.17 6.30 16 43 H 0.03 0.70 3.42 -51.93 -0.18 0.53 16 44 H 0.03 0.57 6.24 -51.93 -0.32 0.24 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -27.74 315.16 -7.28 -35.03 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.98 Total: 5.14 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -0.46 Total: -23.94 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.54 Total: -38.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.13 Total: 17.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.74 -7.28 -35.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381526134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.678 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds