Wall clock time and date at job start Mon Mar 30 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47546 * 2 1 4 4 C 1.53001 * 109.47081 * 120.00588 * 2 1 3 5 5 H 1.08995 * 109.46734 * 299.99279 * 4 2 1 6 6 C 1.52997 * 109.47080 * 59.99500 * 4 2 1 7 7 C 1.53009 * 109.46689 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47110 * 300.00208 * 7 6 4 9 9 H 1.09000 * 109.46662 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46873 * 299.99798 * 8 7 6 11 11 C 1.52996 * 109.47489 * 59.99908 * 8 7 6 12 12 C 1.53001 * 109.46791 * 179.97438 * 4 2 1 13 13 H 1.08996 * 109.47267 * 59.99639 * 12 4 2 14 14 N 1.46898 * 109.47120 * 299.99608 * 12 4 2 15 15 C 1.46904 * 111.00137 * 134.81879 * 14 12 4 16 16 H 1.09000 * 109.46930 * 326.30930 * 15 14 12 17 17 C 1.53004 * 109.46787 * 86.30891 * 15 14 12 18 18 C 1.50702 * 109.47121 * 206.30579 * 15 14 12 19 19 H 1.07991 * 120.00135 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99731 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99973 * 180.02562 * 20 18 15 22 22 Si 1.86809 * 120.00042 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47192 * 89.99886 * 22 20 18 24 24 H 1.48504 * 109.46947 * 209.99896 * 22 20 18 25 25 H 1.48499 * 109.46740 * 329.99560 * 22 20 18 26 26 H 1.09001 * 109.47472 * 59.99596 * 1 2 3 27 27 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46524 * 299.99941 * 1 2 3 29 29 H 1.09003 * 109.46524 * 240.00059 * 2 1 3 30 30 H 1.08997 * 109.47352 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47065 * 300.00653 * 3 2 1 32 32 H 1.09007 * 109.46810 * 60.00084 * 3 2 1 33 33 H 1.08997 * 109.47377 * 299.99544 * 6 4 2 34 34 H 1.08998 * 109.47167 * 60.00624 * 6 4 2 35 35 H 1.08995 * 109.46807 * 59.99974 * 7 6 4 36 36 H 1.08998 * 109.46653 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.47092 * 47.65054 * 10 8 7 38 38 H 1.09004 * 109.46768 * 167.64625 * 10 8 7 39 39 H 1.08997 * 109.47225 * 287.64798 * 10 8 7 40 40 H 1.08998 * 109.47431 * 179.97438 * 11 8 7 41 41 H 1.09007 * 109.46810 * 59.99695 * 11 8 7 42 42 H 1.00900 * 111.00146 * 10.86669 * 14 12 4 43 43 H 1.08997 * 109.47031 * 185.18152 * 17 15 14 44 44 H 1.08997 * 109.47033 * 305.18036 * 17 15 14 45 45 H 1.09003 * 109.47268 * 65.18364 * 17 15 14 46 46 H 0.97006 * 119.99990 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6768 -0.2075 2.1391 6 6 1.5299 -2.1638 1.2491 7 6 2.0405 -2.8853 2.4980 8 6 3.5705 -2.8854 2.4973 9 1 3.9342 -3.3998 3.3868 10 6 4.0799 -3.6065 1.2477 11 6 4.0806 -1.4429 2.4973 12 6 3.5700 -0.7219 1.2488 13 1 3.9337 0.3056 1.2486 14 7 4.0591 -1.4147 0.0493 15 6 5.1461 -0.6597 -0.5883 16 1 4.9717 0.4083 -0.4581 17 6 6.4794 -1.0412 0.0581 18 6 5.1892 -0.9862 -2.0589 19 1 4.4799 -1.6844 -2.4780 20 6 6.1343 -0.3936 -2.8691 21 7 6.1717 -0.6782 -4.1526 22 14 7.3619 0.8134 -2.1439 23 1 8.5708 0.0788 -1.6923 24 1 7.7450 1.8100 -3.1762 25 1 6.7454 1.5111 -0.9870 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 0.4399 -2.1638 1.2492 34 1 1.8933 -2.6776 0.3591 35 1 1.6776 -2.3716 3.3882 36 1 1.6775 -3.9131 2.4977 37 1 3.5479 -3.2352 0.3718 38 1 5.1474 -3.4200 1.1304 39 1 3.9073 -4.6777 1.3507 40 1 5.1706 -1.4430 2.4973 41 1 3.7176 -0.9292 3.3876 42 1 3.3073 -1.5854 -0.6016 43 1 7.2732 -0.4157 -0.3501 44 1 6.4167 -0.8913 1.1359 45 1 6.6982 -2.0884 -0.1510 46 1 6.8364 -0.2610 -4.7227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381526134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:55 Heat of formation + Delta-G solvation = -28.096607 kcal Electronic energy + Delta-G solvation = -21207.067337 eV Core-core repulsion = 18516.349105 eV Total energy + Delta-G solvation = -2690.718232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16678 -36.83217 -36.39914 -34.19800 -31.74480 -31.31239 -29.30304 -28.00182 -27.07973 -26.85189 -23.39924 -22.81446 -21.89841 -20.37599 -19.37769 -18.63674 -17.52615 -16.62017 -16.12456 -15.57499 -15.42125 -14.99191 -14.72041 -14.44649 -14.26301 -14.02705 -14.01020 -13.60078 -13.28837 -13.06632 -12.90608 -12.76728 -12.75873 -12.53345 -12.46317 -12.13110 -12.05431 -11.90090 -11.63032 -11.46749 -11.42809 -11.31422 -11.11365 -10.91206 -10.78286 -10.66736 -10.43082 -8.66890 -8.29040 -6.31153 1.28689 1.32351 1.42290 2.30481 3.06943 3.59063 3.79577 3.81477 4.03682 4.22929 4.31568 4.34712 4.51292 4.53885 4.62256 4.69539 4.72577 4.74205 4.80291 4.82042 4.84910 4.88885 4.96706 5.02058 5.07598 5.10911 5.14740 5.21510 5.23542 5.29747 5.32910 5.35404 5.47186 5.49547 5.54802 5.58564 5.63085 5.68086 5.74458 5.78309 6.09526 6.17487 6.61166 6.76916 6.95618 7.35720 8.87152 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.008323 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.490883 B = 3363.391957 C = 3986.624026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.079 4.079 5 H 0.084 0.916 6 C -0.112 4.112 7 C -0.104 4.104 8 C -0.077 4.077 9 H 0.062 0.938 10 C -0.131 4.131 11 C -0.099 4.099 12 C 0.084 3.916 13 H 0.036 0.964 14 N -0.652 5.652 15 C 0.188 3.812 16 H -0.009 1.009 17 C -0.132 4.132 18 C -0.510 4.510 19 H 0.040 0.960 20 C 0.016 3.984 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.271 1.271 24 H -0.301 1.301 25 H -0.254 1.254 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.023 0.977 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.334 0.666 43 H 0.023 0.977 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 0.265 15.394 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.098 4.098 5 H 0.102 0.898 6 C -0.150 4.150 7 C -0.141 4.141 8 C -0.095 4.095 9 H 0.080 0.920 10 C -0.188 4.188 11 C -0.138 4.138 12 C -0.026 4.026 13 H 0.054 0.946 14 N -0.286 5.286 15 C 0.078 3.922 16 H 0.008 0.992 17 C -0.189 4.189 18 C -0.549 4.549 19 H 0.058 0.942 20 C -0.181 4.181 21 N -0.588 5.588 22 Si 0.775 3.225 23 H -0.198 1.198 24 H -0.229 1.229 25 H -0.179 1.179 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.155 0.845 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.446 -0.112 15.581 18.221 hybrid contribution 0.683 1.228 -1.013 1.732 sum -8.763 1.116 14.568 17.037 Atomic orbital electron populations 1.21803 0.93600 1.02269 1.01850 1.21157 0.96951 0.95673 0.97809 1.21854 1.00130 0.96609 1.01690 1.21412 0.93870 0.96638 0.97870 0.89804 1.21626 1.00240 0.94359 0.98726 1.21481 0.94656 1.00216 0.97786 1.20920 0.95688 0.95152 0.97763 0.91989 1.22023 1.00845 0.96433 0.99481 1.21626 0.99702 0.96172 0.96254 1.21728 0.94161 0.95005 0.91727 0.94620 1.61204 1.12444 1.46541 1.08368 1.19449 0.90418 0.90889 0.91431 0.99175 1.22020 0.97373 1.00416 0.99105 1.21407 1.15683 1.25059 0.92738 0.94171 1.25697 0.99319 0.98218 0.94905 1.70037 1.37084 1.45669 1.05967 0.85884 0.79974 0.78979 0.77623 1.19760 1.22873 1.17877 0.93243 0.91741 0.91588 0.93527 0.94658 0.93377 0.91322 0.90764 0.92698 0.91303 0.91873 0.90193 0.95009 0.95789 0.93403 0.91236 0.84490 0.95872 0.92632 0.93437 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.84 71.98 0.64 -2.32 16 2 C -0.10 -2.63 2.32 -10.79 -0.03 -2.66 16 3 C -0.15 -4.13 8.84 71.98 0.64 -3.49 16 4 C -0.08 -1.98 1.52 -10.79 -0.02 -1.99 16 5 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.11 -2.60 4.49 30.60 0.14 -2.47 16 7 C -0.10 -2.22 5.45 30.60 0.17 -2.05 16 8 C -0.08 -1.95 3.19 -10.79 -0.03 -1.98 16 9 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 10 C -0.13 -4.05 7.75 71.98 0.56 -3.50 16 11 C -0.10 -2.70 5.25 30.58 0.16 -2.54 16 12 C 0.08 2.56 1.90 44.90 0.09 2.65 16 13 H 0.04 1.21 5.47 -2.39 -0.01 1.20 16 14 N -0.65 -24.57 2.31 -473.38 -1.09 -25.66 16 15 C 0.19 8.59 2.15 44.17 0.09 8.69 16 16 H -0.01 -0.44 5.54 -2.39 -0.01 -0.45 16 17 C -0.13 -5.70 8.86 71.98 0.64 -5.06 16 18 C -0.51 -28.62 9.17 25.60 0.23 -28.39 16 19 H 0.04 2.49 7.84 -2.92 -0.02 2.46 16 20 C 0.02 0.93 5.45 84.65 0.46 1.39 16 21 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 22 Si 0.95 46.02 24.32 68.60 1.67 47.69 16 23 H -0.27 -12.74 6.92 99.48 0.69 -12.05 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.25 -11.63 6.53 99.48 0.65 -10.98 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.28 6.43 -2.39 -0.02 1.26 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.56 6.42 -2.39 -0.02 1.55 16 30 H 0.03 1.18 5.57 -2.39 -0.01 1.16 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.07 1.47 6.43 -2.39 -0.02 1.45 16 34 H 0.05 1.52 5.28 -2.39 -0.01 1.50 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 2.72 3.53 -2.39 -0.01 2.72 16 38 H 0.03 1.11 8.01 -2.38 -0.02 1.09 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 1.43 6.37 -2.39 -0.02 1.42 16 41 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.33 13.23 4.43 -89.69 -0.40 12.84 16 43 H 0.02 1.02 3.42 -2.39 -0.01 1.02 16 44 H 0.05 2.09 6.24 -2.39 -0.01 2.08 16 45 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -61.29 315.16 5.08 -56.20 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.48 Total: 24.43 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 3.73 Total: -43.71 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -0.79 Total: -84.62 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -61.29 5.08 -56.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381526134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.106 kcal (2) G-P(sol) polarization free energy of solvation -61.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds