Wall clock time and date at job start Mon Mar 30 2020 07:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46803 * 2 1 4 4 C 1.53000 * 109.47049 * 119.99442 * 2 1 3 5 5 C 1.53000 * 109.47194 * 65.00131 * 4 2 1 6 6 C 1.53000 * 109.47194 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.46782 * 304.99786 * 6 5 4 8 8 C 1.52996 * 109.46838 * 185.00323 * 6 5 4 9 9 N 1.46893 * 109.47373 * 65.00269 * 6 5 4 10 10 C 1.46898 * 110.99991 * 205.00050 * 9 6 5 11 11 H 1.08998 * 110.01852 * 34.93507 * 10 9 6 12 12 C 1.54265 * 110.03403 * 273.54280 * 10 9 6 13 13 C 1.54886 * 104.19754 * 217.05806 * 12 10 9 14 14 C 1.54885 * 102.75011 * 37.94362 * 13 12 10 15 15 H 1.09004 * 110.48827 * 80.86342 * 14 13 12 16 16 C 1.50697 * 110.48936 * 203.38095 * 14 13 12 17 17 H 1.07991 * 120.00449 * 118.26712 * 16 14 13 18 18 C 1.37885 * 119.99686 * 298.54543 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 14 21 21 H 1.48498 * 109.47416 * 59.99812 * 20 18 16 22 22 H 1.48508 * 109.46609 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46903 * 299.99397 * 20 18 16 24 24 C 1.53878 * 110.06990 * 156.35391 * 10 9 6 25 25 H 1.09000 * 109.47301 * 60.00726 * 1 2 3 26 26 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47459 * 300.00361 * 1 2 3 28 28 H 1.08996 * 109.47078 * 239.99865 * 2 1 3 29 29 H 1.09001 * 109.46915 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47224 * 299.99487 * 3 2 1 31 31 H 1.09002 * 109.47408 * 59.99607 * 3 2 1 32 32 H 1.09002 * 109.47460 * 305.00248 * 4 2 1 33 33 H 1.09001 * 109.47313 * 185.00513 * 4 2 1 34 34 H 1.09002 * 109.46822 * 59.99726 * 5 4 2 35 35 H 1.09001 * 109.47302 * 300.00389 * 5 4 2 36 36 H 1.09002 * 109.47556 * 60.00183 * 8 6 5 37 37 H 1.08998 * 109.47118 * 179.97438 * 8 6 5 38 38 H 1.09003 * 109.47365 * 299.99554 * 8 6 5 39 39 H 1.00896 * 111.00264 * 81.04065 * 9 6 5 40 40 H 1.08996 * 110.48475 * 98.37681 * 12 10 9 41 41 H 1.09009 * 110.48229 * 335.73804 * 12 10 9 42 42 H 1.08998 * 110.75884 * 279.62605 * 13 12 10 43 43 H 1.09003 * 110.75604 * 156.25563 * 13 12 10 44 44 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 45 45 H 1.08994 * 110.03524 * 0.02562 * 24 10 9 46 46 H 1.09000 * 110.02979 * 238.58552 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1882 6 6 2.1458 -2.9166 2.4372 7 1 3.2211 -2.7647 2.5304 8 6 1.8507 -4.4131 2.3183 9 7 1.4701 -2.3772 3.6247 10 6 2.2887 -2.5701 4.8292 11 1 3.3456 -2.4718 4.5817 12 6 2.0154 -3.9615 5.4366 13 6 2.0736 -3.7263 6.9664 14 6 1.4047 -2.3384 7.1246 15 1 0.3190 -2.4338 7.1058 16 6 1.8529 -1.6794 8.4036 17 1 2.3896 -0.7429 8.3693 18 6 1.5828 -2.2752 9.6174 19 7 0.9292 -3.4157 9.6592 20 14 2.1451 -1.4623 11.2024 21 1 1.5246 -0.1180 11.3166 22 1 1.7346 -2.2975 12.3597 23 1 3.6238 -1.3256 11.1911 24 6 1.9003 -1.5380 5.9024 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 2.0699 -2.6549 0.3005 35 1 0.5489 -2.2723 1.1422 36 1 2.3520 -4.8135 1.4371 37 1 2.2148 -4.9271 3.2078 38 1 0.7753 -4.5652 2.2250 39 1 0.5561 -2.7888 3.7390 40 1 2.7852 -4.6695 5.1299 41 1 1.0283 -4.3188 5.1429 42 1 3.1064 -3.6992 7.3141 43 1 1.5063 -4.4912 7.4967 44 1 0.7389 -3.8346 10.5131 45 1 1.1039 -0.8937 5.5301 46 1 2.7689 -0.9389 6.1758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382203927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:23 Heat of formation + Delta-G solvation = -47.241057 kcal Electronic energy + Delta-G solvation = -19438.814757 eV Core-core repulsion = 16747.266359 eV Total energy + Delta-G solvation = -2691.548398 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.52002 -36.90728 -34.99405 -32.43306 -30.33034 -28.74971 -27.95550 -27.19449 -25.91993 -23.96967 -23.19361 -20.58152 -19.85223 -19.50812 -18.75652 -16.43227 -15.71681 -15.06925 -14.90999 -14.45902 -14.31541 -13.71941 -13.58762 -13.05953 -12.92736 -12.56300 -12.35608 -12.28204 -12.20217 -12.01586 -11.58337 -11.52186 -11.18265 -10.98783 -10.97524 -10.88886 -10.64408 -10.54325 -10.44144 -10.32410 -10.28412 -9.86538 -9.66928 -9.43944 -9.05512 -8.71148 -8.29248 -7.85062 -5.94100 -3.96458 3.35632 3.39999 3.42923 4.48995 4.58783 4.71360 4.91539 4.94866 5.18868 5.30776 5.37319 5.40818 5.54184 5.58424 5.60902 5.69981 5.73296 5.77766 5.79694 5.84973 5.91361 5.94091 6.01539 6.13346 6.15188 6.16766 6.22505 6.33304 6.36951 6.47649 6.61986 6.63260 6.71371 6.81278 6.95240 7.16687 7.26965 7.42172 7.68670 7.78978 7.86828 7.97616 8.11702 8.54530 9.06383 9.67061 11.14909 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.004237 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.484499 B = 6606.163548 C = 7291.061195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.105 4.105 6 C 0.082 3.918 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.676 5.676 10 C 0.086 3.914 11 H 0.063 0.937 12 C -0.154 4.154 13 C -0.097 4.097 14 C 0.047 3.953 15 H 0.026 0.974 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.106 4.106 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.338 0.662 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.258 0.742 45 H 0.053 0.947 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 1.895 -18.097 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.029 4.029 7 H 0.089 0.911 8 C -0.245 4.245 9 N -0.306 5.306 10 C -0.023 4.023 11 H 0.081 0.919 12 C -0.193 4.193 13 C -0.136 4.136 14 C 0.028 3.972 15 H 0.044 0.956 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.387 2.426 -18.080 18.294 hybrid contribution 0.239 -0.735 1.082 1.330 sum 1.625 1.691 -16.998 17.159 Atomic orbital electron populations 1.21868 0.95479 1.01703 1.01341 1.21145 0.95836 0.95983 0.98686 1.21838 1.00732 0.96372 1.01484 1.21549 1.00128 0.95005 0.97788 1.21613 1.01022 0.95541 0.96152 1.21618 0.98536 0.91359 0.91350 0.91093 1.22641 1.01602 0.98148 1.02066 1.60820 1.05687 1.61655 1.02396 1.22347 0.95744 0.94904 0.89322 0.91854 1.23233 0.99200 0.96546 1.00332 1.22375 1.00166 1.00815 0.90199 1.19446 0.95444 0.90921 0.91354 0.95600 1.21201 1.36080 1.06865 0.90827 0.92813 1.24981 0.95159 0.94958 0.98893 1.69956 1.40617 1.17099 1.25362 0.86730 0.79089 0.79407 0.83174 1.20331 1.21427 1.20379 1.22282 1.00141 0.97045 0.94906 0.93503 0.92584 0.92483 0.92051 0.92978 0.93264 0.92540 0.90225 0.92896 0.92792 0.91948 0.92959 0.91966 0.92790 0.84308 0.93931 0.92927 0.93587 0.91577 0.93185 0.92815 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.95 37.16 0.33 -1.07 16 2 C -0.10 -0.96 2.92 -90.62 -0.26 -1.22 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.11 -1.21 4.57 -26.73 -0.12 -1.33 16 5 C -0.11 -1.16 4.65 -26.73 -0.12 -1.28 16 6 C 0.08 1.03 2.59 -67.72 -0.18 0.85 16 7 H 0.07 0.94 7.45 -51.93 -0.39 0.56 16 8 C -0.19 -2.19 8.95 37.16 0.33 -1.86 16 9 N -0.68 -10.07 5.41 -98.58 -0.53 -10.60 16 10 C 0.09 1.52 3.22 -66.59 -0.21 1.31 16 11 H 0.06 1.11 7.46 -51.93 -0.39 0.72 16 12 C -0.15 -2.86 4.85 -25.07 -0.12 -2.98 16 13 C -0.10 -2.27 5.61 -24.74 -0.14 -2.41 16 14 C 0.05 1.17 2.79 -90.11 -0.25 0.92 16 15 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 16 C -0.51 -14.21 8.49 -34.44 -0.29 -14.51 16 17 H 0.05 1.48 7.57 -52.49 -0.40 1.08 16 18 C 0.06 1.72 5.33 -17.82 -0.09 1.62 16 19 N -0.89 -25.86 12.02 55.43 0.67 -25.19 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.11 -2.22 6.15 -25.61 -0.16 -2.37 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.06 7.75 -51.93 -0.40 0.65 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.81 5.84 -51.93 -0.30 0.51 16 38 H 0.05 0.62 8.13 -51.93 -0.42 0.19 16 39 H 0.34 5.09 7.88 -39.29 -0.31 4.78 16 40 H 0.04 0.73 7.36 -51.93 -0.38 0.35 16 41 H 0.05 0.95 7.58 -51.92 -0.39 0.56 16 42 H 0.05 1.12 8.05 -51.93 -0.42 0.70 16 43 H 0.07 1.69 7.38 -51.93 -0.38 1.31 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 46 H 0.05 1.13 7.68 -51.93 -0.40 0.73 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -27.43 347.43 -9.64 -37.07 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.04 Total: 2.30 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -0.95 Total: -25.35 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.13 Total: -35.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.43 -9.64 -37.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382203927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.168 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds