Wall clock time and date at job start Mon Mar 30 2020 07:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46803 * 2 1 4 4 C 1.53000 * 109.47049 * 119.99442 * 2 1 3 5 5 C 1.53000 * 109.47194 * 65.00131 * 4 2 1 6 6 C 1.53000 * 109.47194 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.46782 * 304.99786 * 6 5 4 8 8 C 1.52996 * 109.46838 * 185.00323 * 6 5 4 9 9 N 1.46893 * 109.47373 * 65.00269 * 6 5 4 10 10 C 1.46898 * 110.99991 * 205.00050 * 9 6 5 11 11 H 1.08998 * 110.01852 * 34.93507 * 10 9 6 12 12 C 1.54265 * 110.03403 * 273.54280 * 10 9 6 13 13 C 1.54886 * 104.19754 * 217.05806 * 12 10 9 14 14 C 1.54885 * 102.75011 * 37.94362 * 13 12 10 15 15 H 1.09004 * 110.48827 * 80.86342 * 14 13 12 16 16 C 1.50697 * 110.48936 * 203.38095 * 14 13 12 17 17 H 1.07991 * 120.00449 * 118.26712 * 16 14 13 18 18 C 1.37885 * 119.99686 * 298.54543 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 14 21 21 H 1.48498 * 109.47416 * 59.99812 * 20 18 16 22 22 H 1.48508 * 109.46609 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46903 * 299.99397 * 20 18 16 24 24 C 1.53878 * 110.06990 * 156.35391 * 10 9 6 25 25 H 1.09000 * 109.47301 * 60.00726 * 1 2 3 26 26 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47459 * 300.00361 * 1 2 3 28 28 H 1.08996 * 109.47078 * 239.99865 * 2 1 3 29 29 H 1.09001 * 109.46915 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47224 * 299.99487 * 3 2 1 31 31 H 1.09002 * 109.47408 * 59.99607 * 3 2 1 32 32 H 1.09002 * 109.47460 * 305.00248 * 4 2 1 33 33 H 1.09001 * 109.47313 * 185.00513 * 4 2 1 34 34 H 1.09002 * 109.46822 * 59.99726 * 5 4 2 35 35 H 1.09001 * 109.47302 * 300.00389 * 5 4 2 36 36 H 1.09002 * 109.47556 * 60.00183 * 8 6 5 37 37 H 1.08998 * 109.47118 * 179.97438 * 8 6 5 38 38 H 1.09003 * 109.47365 * 299.99554 * 8 6 5 39 39 H 1.00896 * 111.00264 * 81.04065 * 9 6 5 40 40 H 1.08996 * 110.48475 * 98.37681 * 12 10 9 41 41 H 1.09009 * 110.48229 * 335.73804 * 12 10 9 42 42 H 1.08998 * 110.75884 * 279.62605 * 13 12 10 43 43 H 1.09003 * 110.75604 * 156.25563 * 13 12 10 44 44 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 45 45 H 1.08994 * 110.03524 * 0.02562 * 24 10 9 46 46 H 1.09000 * 110.02979 * 238.58552 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1882 6 6 2.1458 -2.9166 2.4372 7 1 3.2211 -2.7647 2.5304 8 6 1.8507 -4.4131 2.3183 9 7 1.4701 -2.3772 3.6247 10 6 2.2887 -2.5701 4.8292 11 1 3.3456 -2.4718 4.5817 12 6 2.0154 -3.9615 5.4366 13 6 2.0736 -3.7263 6.9664 14 6 1.4047 -2.3384 7.1246 15 1 0.3190 -2.4338 7.1058 16 6 1.8529 -1.6794 8.4036 17 1 2.3896 -0.7429 8.3693 18 6 1.5828 -2.2752 9.6174 19 7 0.9292 -3.4157 9.6592 20 14 2.1451 -1.4623 11.2024 21 1 1.5246 -0.1180 11.3166 22 1 1.7346 -2.2975 12.3597 23 1 3.6238 -1.3256 11.1911 24 6 1.9003 -1.5380 5.9024 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 2.0699 -2.6549 0.3005 35 1 0.5489 -2.2723 1.1422 36 1 2.3520 -4.8135 1.4371 37 1 2.2148 -4.9271 3.2078 38 1 0.7753 -4.5652 2.2250 39 1 0.5561 -2.7888 3.7390 40 1 2.7852 -4.6695 5.1299 41 1 1.0283 -4.3188 5.1429 42 1 3.1064 -3.6992 7.3141 43 1 1.5063 -4.4912 7.4967 44 1 0.7389 -3.8346 10.5131 45 1 1.1039 -0.8937 5.5301 46 1 2.7689 -0.9389 6.1758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382203927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:22 Heat of formation + Delta-G solvation = -60.682404 kcal Electronic energy + Delta-G solvation = -19439.397617 eV Core-core repulsion = 16747.266359 eV Total energy + Delta-G solvation = -2692.131258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87051 -38.04279 -36.25096 -34.34355 -31.68548 -29.94439 -29.55262 -27.93949 -27.57539 -25.60162 -24.39009 -21.69547 -21.16412 -20.65286 -20.46852 -18.49268 -16.90129 -16.58751 -16.26326 -15.93684 -15.21843 -15.07744 -14.74368 -14.31734 -14.06757 -14.00742 -13.83892 -13.41777 -13.40935 -13.03164 -12.97588 -12.82724 -12.64106 -12.50908 -12.38182 -12.27757 -12.03599 -11.84998 -11.57444 -11.44826 -11.37719 -11.27064 -11.19541 -11.08769 -10.83936 -10.77965 -10.42291 -9.10834 -8.09343 -6.19351 1.41128 1.42495 1.50061 2.44469 3.20047 3.37923 3.83236 4.00341 4.10912 4.13286 4.19103 4.31092 4.39578 4.42203 4.51026 4.68142 4.76341 4.83734 4.86775 4.90848 4.92616 4.96457 4.99676 5.01330 5.08344 5.10734 5.14323 5.20766 5.27273 5.30528 5.33805 5.36173 5.41372 5.47642 5.50373 5.53432 5.64384 5.67904 5.75962 5.97761 6.03718 6.34245 6.45838 6.64019 6.91997 7.47725 8.98303 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.004237 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.484499 B = 6606.163548 C = 7291.061195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.104 4.104 5 C -0.099 4.099 6 C 0.082 3.918 7 H 0.068 0.932 8 C -0.181 4.181 9 N -0.675 5.675 10 C 0.102 3.898 11 H 0.072 0.928 12 C -0.137 4.137 13 C -0.091 4.091 14 C 0.039 3.961 15 H -0.006 1.006 16 C -0.534 4.534 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.951 3.049 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.097 4.097 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.339 0.661 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.259 0.741 45 H 0.053 0.947 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 1.996 -19.829 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.028 4.028 7 H 0.086 0.914 8 C -0.240 4.240 9 N -0.305 5.305 10 C -0.009 4.009 11 H 0.090 0.910 12 C -0.176 4.176 13 C -0.130 4.130 14 C 0.020 3.980 15 H 0.012 0.988 16 C -0.572 4.572 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.777 3.223 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.049 2.534 -19.831 20.097 hybrid contribution 0.006 -0.750 1.605 1.772 sum 2.055 1.783 -18.226 18.428 Atomic orbital electron populations 1.21855 0.95338 1.01796 1.01282 1.21129 0.95912 0.96102 0.98248 1.21838 1.00874 0.96186 1.01540 1.21491 0.99769 0.95322 0.97580 1.21563 1.01107 0.95104 0.95862 1.21691 0.98146 0.92218 0.90735 0.91406 1.22575 1.02026 0.97105 1.02307 1.60746 1.05483 1.62198 1.02036 1.22060 0.96501 0.92827 0.89464 0.90988 1.23106 1.00366 0.97777 0.96367 1.22160 0.98253 0.98977 0.93607 1.19433 0.93615 0.92568 0.92366 0.98776 1.21594 1.36168 1.07003 0.92418 0.93148 1.25759 0.95255 0.95520 1.02165 1.70089 1.41498 1.18255 1.26039 0.85718 0.78877 0.78555 0.79156 1.19691 1.20990 1.19628 1.22123 0.99581 0.97354 0.94426 0.92428 0.92411 0.93697 0.90960 0.92780 0.92161 0.93552 0.92576 0.93190 0.91007 0.91879 0.91175 0.93195 0.92425 0.84225 0.91884 0.92269 0.95125 0.94523 0.93228 0.92815 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.95 71.98 0.64 -1.88 16 2 C -0.10 -1.68 2.92 -10.79 -0.03 -1.71 16 3 C -0.15 -2.51 9.19 71.98 0.66 -1.85 16 4 C -0.10 -2.17 4.57 30.59 0.14 -2.03 16 5 C -0.10 -1.91 4.65 30.59 0.14 -1.77 16 6 C 0.08 1.86 2.59 44.92 0.12 1.98 16 7 H 0.07 1.62 7.45 -2.39 -0.02 1.61 16 8 C -0.18 -3.76 8.95 71.98 0.64 -3.12 16 9 N -0.67 -19.11 5.41 -465.80 -2.52 -21.63 16 10 C 0.10 3.47 3.22 45.64 0.15 3.62 16 11 H 0.07 2.38 7.46 -2.39 -0.02 2.37 16 12 C -0.14 -4.97 4.85 31.67 0.15 -4.81 16 13 C -0.09 -4.37 5.61 31.88 0.18 -4.19 16 14 C 0.04 2.00 2.79 -10.47 -0.03 1.97 16 15 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 16 C -0.53 -30.34 8.49 25.60 0.22 -30.12 16 17 H 0.05 2.82 7.57 -2.92 -0.02 2.80 16 18 C 0.01 0.65 5.33 84.66 0.45 1.11 16 19 N -0.92 -54.60 12.02 21.45 0.26 -54.34 16 20 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.10 -4.08 6.15 31.32 0.19 -3.89 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.97 6.56 -2.39 -0.02 0.96 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.44 7.75 -2.39 -0.02 1.42 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.24 6.56 -2.39 -0.02 1.22 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.16 5.84 -2.39 -0.01 1.15 16 38 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 39 H 0.34 9.70 7.88 -89.70 -0.71 9.00 16 40 H 0.06 2.05 7.36 -2.39 -0.02 2.03 16 41 H 0.06 2.07 7.58 -2.38 -0.02 2.05 16 42 H 0.03 1.51 8.05 -2.39 -0.02 1.49 16 43 H 0.04 1.93 7.38 -2.39 -0.02 1.91 16 44 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.05 2.23 7.92 -2.39 -0.02 2.21 16 46 H 0.04 1.94 7.68 -2.39 -0.02 1.92 16 Total: -1.00 -59.64 347.43 3.59 -56.05 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.20 Total: 19.97 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.63 Total: -46.69 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.26 Total: -75.97 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -59.64 3.59 -56.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382203927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.630 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds