Wall clock time and date at job start Mon Mar 30 2020 07:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 C 1.52996 * 109.47245 * 120.00439 * 2 1 3 5 5 C 1.53005 * 109.46840 * 174.99793 * 4 2 1 6 6 C 1.53006 * 109.46991 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.46884 * 305.00622 * 6 5 4 8 8 C 1.52997 * 109.47127 * 184.99870 * 6 5 4 9 9 N 1.46902 * 109.46626 * 65.00206 * 6 5 4 10 10 C 1.46911 * 110.99614 * 205.00042 * 9 6 5 11 11 H 1.08994 * 110.01518 * 325.06005 * 10 9 6 12 12 C 1.54259 * 110.03136 * 86.45531 * 10 9 6 13 13 C 1.54893 * 104.19737 * 142.89606 * 12 10 9 14 14 C 1.54892 * 102.74250 * 322.05366 * 13 12 10 15 15 H 1.08997 * 110.48662 * 279.12898 * 14 13 12 16 16 C 1.50704 * 110.48142 * 156.62207 * 14 13 12 17 17 H 1.08004 * 119.99547 * 241.45312 * 16 14 13 18 18 C 1.37870 * 120.00390 * 61.45495 * 16 14 13 19 19 N 1.31514 * 119.99704 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00406 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47036 * 89.99737 * 20 18 16 22 22 H 1.48496 * 109.47138 * 209.99688 * 20 18 16 23 23 H 1.48499 * 109.46829 * 329.99996 * 20 18 16 24 24 C 1.53876 * 110.02691 * 203.62078 * 10 9 6 25 25 H 1.09004 * 109.46832 * 299.99680 * 1 2 3 26 26 H 1.08992 * 109.47199 * 59.99292 * 1 2 3 27 27 H 1.08992 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46832 * 240.00319 * 2 1 3 29 29 H 1.09004 * 109.46930 * 60.00379 * 3 2 1 30 30 H 1.09000 * 109.47312 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47067 * 300.00462 * 3 2 1 32 32 H 1.08996 * 109.47312 * 55.00080 * 4 2 1 33 33 H 1.09006 * 109.47002 * 294.99412 * 4 2 1 34 34 H 1.08996 * 109.46933 * 60.00056 * 5 4 2 35 35 H 1.09000 * 109.47335 * 299.99927 * 5 4 2 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46832 * 60.00321 * 8 6 5 38 38 H 1.09004 * 109.47261 * 300.00303 * 8 6 5 39 39 H 1.00897 * 111.00496 * 328.94851 * 9 6 5 40 40 H 1.09006 * 110.48807 * 261.56905 * 12 10 9 41 41 H 1.09005 * 110.49359 * 24.08172 * 12 10 9 42 42 H 1.09000 * 110.75717 * 80.36627 * 13 12 10 43 43 H 1.09002 * 110.75419 * 203.74153 * 13 12 10 44 44 H 0.97002 * 119.99924 * 180.02562 * 19 18 16 45 45 H 1.08995 * 110.03540 * 359.97438 * 24 10 9 46 46 H 1.09008 * 110.02894 * 121.43318 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 6 4.0751 -1.5519 2.4373 7 1 3.7117 -1.0378 3.3270 8 6 5.6051 -1.5519 2.4371 9 7 3.5854 -2.9369 2.4377 10 6 3.5227 -3.4726 3.8042 11 1 4.3436 -3.0731 4.3995 12 6 2.1721 -3.1070 4.4536 13 6 1.8068 -4.3532 5.2978 14 6 2.2827 -5.5240 4.4023 15 1 1.5438 -5.7385 3.6303 16 6 2.5450 -6.7521 5.2354 17 1 3.5363 -7.1795 5.2699 18 6 1.5198 -7.3301 5.9534 19 7 0.3128 -6.8094 5.9117 20 14 1.8448 -8.8529 6.9854 21 1 2.2429 -8.4457 8.3568 22 1 0.6120 -9.6780 7.0523 23 1 2.9381 -9.6455 6.3675 24 6 3.5930 -5.0094 3.7715 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6768 1.9563 0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6055 -1.7199 1.2950 33 1 1.7518 -0.1584 2.1369 34 1 3.9995 0.1674 1.1419 35 1 3.8533 -1.3940 0.3000 36 1 5.9685 -2.0658 3.3270 37 1 5.9683 -0.5242 2.4367 38 1 5.9683 -2.0661 1.5472 39 1 2.6877 -3.0033 1.9818 40 1 2.2811 -2.2314 5.0936 41 1 1.4169 -2.9273 3.6884 42 1 2.3445 -4.3487 6.2459 43 1 0.7306 -4.4059 5.4630 44 1 -0.4085 -7.2158 6.4171 45 1 3.6732 -5.3577 2.7418 46 1 4.4482 -5.3565 4.3516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382203942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:26 Heat of formation + Delta-G solvation = -47.170771 kcal Electronic energy + Delta-G solvation = -19493.935251 eV Core-core repulsion = 16802.389902 eV Total energy + Delta-G solvation = -2691.545350 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.59136 -36.95364 -34.98356 -32.45492 -30.26504 -28.92727 -27.96211 -27.31524 -26.04384 -23.90763 -23.28517 -20.21573 -20.05146 -19.55000 -18.76484 -16.46447 -15.74590 -15.34620 -15.02494 -14.49774 -14.27747 -14.07080 -13.47263 -13.20484 -12.71290 -12.58041 -12.31996 -12.31562 -12.25731 -11.92155 -11.72170 -11.42295 -11.35383 -11.20167 -10.97650 -10.74647 -10.66933 -10.65338 -10.53402 -10.40993 -10.24879 -9.92586 -9.68350 -9.44541 -9.05518 -8.70189 -8.29369 -7.85236 -5.93974 -3.96305 3.34172 3.40806 3.44478 4.49147 4.55981 4.61859 4.77741 4.80841 5.15709 5.21465 5.31594 5.38126 5.48397 5.53792 5.59554 5.63968 5.69070 5.72613 5.76417 5.80356 5.88611 5.90737 5.93330 6.01190 6.08196 6.12775 6.17130 6.29648 6.35556 6.39036 6.44855 6.63942 6.70162 6.82310 6.95569 7.17280 7.27342 7.42497 7.69222 7.79333 7.88730 7.98005 8.11795 8.54752 9.06677 9.67313 11.15071 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.004282 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.345118 B = 6537.422281 C = 7184.735477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.120 4.120 5 C -0.120 4.120 6 C 0.081 3.919 7 H 0.039 0.961 8 C -0.138 4.138 9 N -0.681 5.681 10 C 0.085 3.915 11 H 0.064 0.936 12 C -0.155 4.155 13 C -0.095 4.095 14 C 0.046 3.954 15 H 0.026 0.974 16 C -0.510 4.510 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.339 0.661 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.258 0.742 45 H 0.053 0.947 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 14.945 -9.723 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.029 4.029 7 H 0.057 0.943 8 C -0.196 4.196 9 N -0.314 5.314 10 C -0.024 4.024 11 H 0.082 0.918 12 C -0.194 4.194 13 C -0.134 4.134 14 C 0.028 3.972 15 H 0.044 0.956 16 C -0.549 4.549 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.209 14.648 -9.798 18.118 hybrid contribution -0.738 -0.331 1.085 1.353 sum 3.471 14.317 -8.713 17.115 Atomic orbital electron populations 1.21853 0.95380 1.01943 1.01448 1.21102 0.95596 0.96180 0.98543 1.21892 1.01115 0.96142 1.01381 1.21724 0.95740 1.00659 0.97605 1.21819 0.95233 1.00263 0.98495 1.21498 0.95426 0.89443 0.96571 0.94288 1.21782 0.95160 1.00274 1.02363 1.60851 1.33497 1.18182 1.18821 1.22334 0.96059 0.96939 0.87107 0.91750 1.23161 0.97093 0.99374 0.99761 1.22358 1.01241 0.92467 0.97333 1.19456 0.91074 0.92862 0.93821 0.95597 1.21238 0.95309 1.10926 1.27402 0.92751 1.24980 0.95187 0.97075 0.96782 1.69966 1.00628 1.40436 1.42000 0.86666 0.77601 0.83401 0.80750 1.20822 1.21352 1.19957 1.22280 1.00485 0.91616 0.99988 0.92797 0.92990 0.92480 0.91283 0.92866 0.92490 0.93108 0.91628 0.92148 0.91620 0.91295 0.92815 0.93337 0.92269 0.84095 0.94059 0.93028 0.93546 0.91522 0.93244 0.92828 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.10 -0.90 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.24 8.95 37.16 0.33 -0.91 16 4 C -0.12 -1.28 4.51 -26.73 -0.12 -1.41 16 5 C -0.12 -1.30 4.56 -26.73 -0.12 -1.42 16 6 C 0.08 1.05 2.49 -67.71 -0.17 0.88 16 7 H 0.04 0.54 7.73 -51.93 -0.40 0.14 16 8 C -0.14 -1.69 9.40 37.16 0.35 -1.34 16 9 N -0.68 -10.59 5.97 -98.57 -0.59 -11.18 16 10 C 0.09 1.55 3.02 -66.59 -0.20 1.35 16 11 H 0.06 1.16 7.16 -51.93 -0.37 0.79 16 12 C -0.15 -2.94 6.29 -25.07 -0.16 -3.10 16 13 C -0.10 -2.26 5.61 -24.73 -0.14 -2.40 16 14 C 0.05 1.17 2.79 -90.11 -0.25 0.92 16 15 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.51 -14.26 8.49 -34.44 -0.29 -14.55 16 17 H 0.05 1.51 7.58 -52.48 -0.40 1.11 16 18 C 0.06 1.71 5.33 -17.82 -0.09 1.62 16 19 N -0.89 -25.91 12.01 55.43 0.67 -25.24 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.11 -2.26 6.15 -25.61 -0.16 -2.41 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.71 7.45 -51.93 -0.39 0.33 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.34 5.24 5.87 -39.29 -0.23 5.01 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.95 7.58 -51.93 -0.39 0.56 16 42 H 0.05 1.14 8.05 -51.93 -0.42 0.72 16 43 H 0.07 1.72 7.37 -51.93 -0.38 1.33 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 46 H 0.05 1.15 7.68 -51.92 -0.40 0.75 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -27.91 348.49 -9.65 -37.56 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -9.02 Total: 1.99 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.95 Total: -24.97 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.08 Total: -36.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.91 -9.65 -37.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382203942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.608 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds