Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 108.77928 * 2 1 4 4 C 1.54074 * 108.81369 * 241.59697 * 2 1 3 5 5 C 1.50466 * 112.49426 * 197.42017 * 4 2 1 6 6 C 1.54246 * 108.52212 * 94.15055 * 5 4 2 7 7 C 1.45538 * 112.40665 * 280.00962 * 6 5 4 8 8 C 1.54240 * 112.40209 * 61.93478 * 7 6 5 9 9 C 1.50477 * 108.52154 * 280.01071 * 8 7 6 10 10 H 1.08997 * 108.79701 * 333.43120 * 9 8 7 11 11 N 1.46900 * 108.87300 * 214.93045 * 9 8 7 12 12 C 1.46903 * 111.00232 * 82.02747 * 11 9 8 13 13 C 1.52991 * 109.47500 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47400 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47415 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47046 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99550 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47020 * 90.00089 * 20 18 16 22 22 H 1.48498 * 109.47176 * 210.00101 * 20 18 16 23 23 H 1.48499 * 109.46791 * 330.00239 * 20 18 16 24 24 H 1.08999 * 109.46675 * 178.40584 * 1 2 3 25 25 H 1.08995 * 109.46712 * 298.40331 * 1 2 3 26 26 H 1.08996 * 109.47056 * 58.40626 * 1 2 3 27 27 H 1.09001 * 108.87570 * 76.64020 * 4 2 1 28 28 H 1.08997 * 108.79278 * 318.14558 * 4 2 1 29 29 H 1.09004 * 109.63181 * 334.43958 * 5 4 2 30 30 H 1.09002 * 109.62802 * 213.85846 * 5 4 2 31 31 H 1.09000 * 108.89299 * 40.76867 * 6 5 4 32 32 H 1.08998 * 108.89527 * 159.25393 * 6 5 4 33 33 H 1.08998 * 108.89422 * 182.68921 * 7 6 5 34 34 H 1.09000 * 108.89571 * 301.18340 * 7 6 5 35 35 H 1.09001 * 109.62627 * 160.30519 * 8 7 6 36 36 H 1.08995 * 109.79339 * 39.82133 * 8 7 6 37 37 H 1.00902 * 111.00082 * 205.97525 * 11 9 8 38 38 H 1.09006 * 109.46996 * 299.99690 * 12 11 9 39 39 H 1.09006 * 109.46909 * 59.99139 * 12 11 9 40 40 H 1.09008 * 109.47332 * 299.99671 * 13 12 11 41 41 H 1.08992 * 109.47642 * 59.99555 * 13 12 11 42 42 H 1.08996 * 109.47073 * 300.00013 * 14 13 12 43 43 H 1.09006 * 109.46907 * 59.99365 * 14 13 12 44 44 H 1.08996 * 109.47350 * 300.00260 * 15 14 13 45 45 H 1.08997 * 109.46662 * 60.00094 * 15 14 13 46 46 H 0.96999 * 119.99253 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0269 -0.6937 -1.2829 5 6 3.4681 -1.1155 -1.1879 6 6 3.5191 -2.5835 -0.7170 7 6 3.3394 -2.7111 0.7216 8 6 1.9648 -2.1920 1.1907 9 6 2.0270 -0.6914 1.2839 10 1 3.0591 -0.3934 1.4681 11 7 1.1968 -0.2507 2.4128 12 6 1.9276 -0.3695 3.6817 13 6 1.0329 0.0982 4.8312 14 6 1.7939 -0.0261 6.1528 15 6 0.8994 0.4422 7.3024 16 6 1.6487 0.3191 8.6041 17 1 2.6617 -0.0552 8.6107 18 6 1.0410 0.6845 9.7866 19 7 -0.1925 1.1408 9.7783 20 14 1.9700 0.5326 11.4001 21 1 2.6989 1.7974 11.6725 22 1 1.0095 0.2677 12.5012 23 1 2.9401 -0.5881 11.3090 24 1 -0.3632 -1.0273 -0.0286 25 1 -0.3632 0.4888 0.9039 26 1 -0.3633 0.5384 -0.8753 27 1 1.9151 -0.0064 -2.1214 28 1 1.4127 -1.5753 -1.4657 29 1 3.9885 -0.4822 -0.4694 30 1 3.9404 -1.0284 -2.1665 31 1 2.7322 -3.1437 -1.2222 32 1 4.4844 -3.0089 -0.9914 33 1 3.4329 -3.7616 0.9971 34 1 4.1218 -2.1446 1.2266 35 1 1.7301 -2.6102 2.1695 36 1 1.1964 -2.4829 0.4745 37 1 0.8670 0.6925 2.2726 38 1 2.2112 -1.4098 3.8416 39 1 2.8239 0.2498 3.6441 40 1 0.7497 1.1386 4.6712 41 1 0.1365 -0.5206 4.8690 42 1 2.0767 -1.0665 6.3127 43 1 2.6906 0.5925 6.1153 44 1 0.6169 1.4827 7.1423 45 1 0.0026 -0.1761 7.3399 46 1 -0.6201 1.3975 10.6103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385187601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = -45.691030 kcal Electronic energy + Delta-G solvation = -19064.340240 eV Core-core repulsion = 16372.859056 eV Total energy + Delta-G solvation = -2691.481183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.76909 -36.23220 -34.40563 -33.44695 -32.25393 -30.56828 -28.07348 -27.37872 -24.76232 -23.37681 -23.11877 -21.25348 -20.68611 -20.04100 -18.68781 -16.46798 -16.09186 -15.66508 -15.32956 -14.73848 -14.44429 -14.14326 -13.98644 -13.80761 -13.23208 -13.08728 -12.55795 -12.38722 -12.20660 -12.06329 -11.83618 -11.55803 -11.45506 -11.08449 -10.94623 -10.87260 -10.70334 -10.58496 -10.49781 -10.42476 -10.36718 -10.28067 -10.21500 -9.58823 -9.21351 -8.96326 -8.30868 -8.27740 -5.95247 -3.97319 3.34392 3.40345 3.44067 4.15791 4.38059 4.49839 4.52794 4.77042 4.83790 4.98120 5.09001 5.11373 5.24426 5.32977 5.40128 5.47023 5.52373 5.57686 5.63069 5.65955 5.72676 5.84782 5.87113 5.94143 5.97124 5.97458 6.03107 6.08459 6.19943 6.22352 6.25647 6.26194 6.35153 6.41845 6.57668 6.87775 7.01739 7.14048 7.30679 7.52716 7.74269 7.90618 8.06285 8.49194 9.10305 9.66363 11.16153 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041107 B = 0.003158 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.992876 B = 8865.464106 C = 9306.896464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.106 4.106 9 C 0.095 3.905 10 H 0.037 0.963 11 N -0.687 5.687 12 C 0.059 3.941 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.338 0.662 38 H 0.068 0.932 39 H 0.023 0.977 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -4.689 -23.754 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.159 4.159 8 C -0.144 4.144 9 C -0.015 4.015 10 H 0.055 0.945 11 N -0.319 5.319 12 C -0.070 4.070 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.610 -5.230 -23.561 24.571 hybrid contribution 1.101 0.748 0.931 1.624 sum 5.711 -4.482 -22.630 23.766 Atomic orbital electron populations 1.21796 0.94476 1.02204 1.01473 1.21678 0.96707 0.98803 0.93863 0.92025 1.21366 0.96225 1.00479 0.96705 1.21361 0.96904 0.96482 1.00970 1.20487 1.01489 0.96557 0.96785 1.20494 0.97895 1.01204 0.96303 1.21381 0.96320 0.94720 1.02017 1.21338 0.94767 0.95460 0.89932 0.94493 1.60830 1.39784 1.29705 1.01556 1.22111 0.95056 1.00816 0.89012 1.21626 0.98949 1.00625 0.94071 1.21588 0.98854 1.00174 0.94080 1.19088 0.94681 0.96346 0.91468 1.21300 0.99851 1.42674 0.91979 0.92794 1.25038 0.94933 0.95417 0.99178 1.69975 1.12401 1.44223 1.26993 0.86610 0.79640 0.78383 0.83467 1.20720 1.21233 1.19897 0.92471 0.91465 0.93609 0.92458 0.91799 0.91749 0.92164 0.92256 0.92674 0.92307 0.92402 0.90952 0.91560 0.84340 0.91338 0.95844 0.92881 0.91714 0.93496 0.93772 0.96776 0.96619 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.59 37.16 0.32 -1.00 16 2 C -0.09 -0.84 2.38 -89.50 -0.21 -1.05 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.88 4.69 -27.44 -0.13 -1.00 16 5 C -0.12 -0.93 5.61 -27.34 -0.15 -1.09 16 6 C -0.12 -0.92 5.26 -29.60 -0.16 -1.07 16 7 C -0.12 -1.11 5.26 -29.60 -0.16 -1.26 16 8 C -0.11 -1.11 5.12 -27.34 -0.14 -1.25 16 9 C 0.09 1.01 1.71 -68.42 -0.12 0.90 16 10 H 0.04 0.43 6.27 -51.93 -0.33 0.10 16 11 N -0.69 -8.60 5.28 -107.48 -0.57 -9.17 16 12 C 0.06 0.85 5.39 -3.83 -0.02 0.83 16 13 C -0.11 -2.01 5.47 -26.73 -0.15 -2.15 16 14 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.56 7.40 -51.93 -0.38 0.17 16 25 H 0.07 0.68 6.27 -51.93 -0.33 0.35 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 6.45 -51.93 -0.33 0.18 16 29 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 7.47 -51.93 -0.39 0.07 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.56 7.47 -51.93 -0.39 0.17 16 35 H 0.07 0.88 6.97 -51.93 -0.36 0.51 16 36 H 0.07 0.68 6.25 -51.93 -0.32 0.35 16 37 H 0.34 4.05 7.03 -39.29 -0.28 3.77 16 38 H 0.07 1.01 7.22 -51.93 -0.37 0.64 16 39 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 40 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -29.84 341.17 -10.19 -40.02 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.88 Total: -2.10 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.60 Total: -24.11 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.17 Total: -36.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.84 -10.19 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.667 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds