Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 108.77928 * 2 1 4 4 C 1.54074 * 108.81369 * 241.59697 * 2 1 3 5 5 C 1.50466 * 112.49426 * 197.42017 * 4 2 1 6 6 C 1.54246 * 108.52212 * 94.15055 * 5 4 2 7 7 C 1.45538 * 112.40665 * 280.00962 * 6 5 4 8 8 C 1.54240 * 112.40209 * 61.93478 * 7 6 5 9 9 C 1.50477 * 108.52154 * 280.01071 * 8 7 6 10 10 H 1.08997 * 108.79701 * 333.43120 * 9 8 7 11 11 N 1.46900 * 108.87300 * 214.93045 * 9 8 7 12 12 C 1.46903 * 111.00232 * 82.02747 * 11 9 8 13 13 C 1.52991 * 109.47500 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47400 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47415 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47046 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99550 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47020 * 90.00089 * 20 18 16 22 22 H 1.48498 * 109.47176 * 210.00101 * 20 18 16 23 23 H 1.48499 * 109.46791 * 330.00239 * 20 18 16 24 24 H 1.08999 * 109.46675 * 178.40584 * 1 2 3 25 25 H 1.08995 * 109.46712 * 298.40331 * 1 2 3 26 26 H 1.08996 * 109.47056 * 58.40626 * 1 2 3 27 27 H 1.09001 * 108.87570 * 76.64020 * 4 2 1 28 28 H 1.08997 * 108.79278 * 318.14558 * 4 2 1 29 29 H 1.09004 * 109.63181 * 334.43958 * 5 4 2 30 30 H 1.09002 * 109.62802 * 213.85846 * 5 4 2 31 31 H 1.09000 * 108.89299 * 40.76867 * 6 5 4 32 32 H 1.08998 * 108.89527 * 159.25393 * 6 5 4 33 33 H 1.08998 * 108.89422 * 182.68921 * 7 6 5 34 34 H 1.09000 * 108.89571 * 301.18340 * 7 6 5 35 35 H 1.09001 * 109.62627 * 160.30519 * 8 7 6 36 36 H 1.08995 * 109.79339 * 39.82133 * 8 7 6 37 37 H 1.00902 * 111.00082 * 205.97525 * 11 9 8 38 38 H 1.09006 * 109.46996 * 299.99690 * 12 11 9 39 39 H 1.09006 * 109.46909 * 59.99139 * 12 11 9 40 40 H 1.09008 * 109.47332 * 299.99671 * 13 12 11 41 41 H 1.08992 * 109.47642 * 59.99555 * 13 12 11 42 42 H 1.08996 * 109.47073 * 300.00013 * 14 13 12 43 43 H 1.09006 * 109.46907 * 59.99365 * 14 13 12 44 44 H 1.08996 * 109.47350 * 300.00260 * 15 14 13 45 45 H 1.08997 * 109.46662 * 60.00094 * 15 14 13 46 46 H 0.96999 * 119.99253 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0269 -0.6937 -1.2829 5 6 3.4681 -1.1155 -1.1879 6 6 3.5191 -2.5835 -0.7170 7 6 3.3394 -2.7111 0.7216 8 6 1.9648 -2.1920 1.1907 9 6 2.0270 -0.6914 1.2839 10 1 3.0591 -0.3934 1.4681 11 7 1.1968 -0.2507 2.4128 12 6 1.9276 -0.3695 3.6817 13 6 1.0329 0.0982 4.8312 14 6 1.7939 -0.0261 6.1528 15 6 0.8994 0.4422 7.3024 16 6 1.6487 0.3191 8.6041 17 1 2.6617 -0.0552 8.6107 18 6 1.0410 0.6845 9.7866 19 7 -0.1925 1.1408 9.7783 20 14 1.9700 0.5326 11.4001 21 1 2.6989 1.7974 11.6725 22 1 1.0095 0.2677 12.5012 23 1 2.9401 -0.5881 11.3090 24 1 -0.3632 -1.0273 -0.0286 25 1 -0.3632 0.4888 0.9039 26 1 -0.3633 0.5384 -0.8753 27 1 1.9151 -0.0064 -2.1214 28 1 1.4127 -1.5753 -1.4657 29 1 3.9885 -0.4822 -0.4694 30 1 3.9404 -1.0284 -2.1665 31 1 2.7322 -3.1437 -1.2222 32 1 4.4844 -3.0089 -0.9914 33 1 3.4329 -3.7616 0.9971 34 1 4.1218 -2.1446 1.2266 35 1 1.7301 -2.6102 2.1695 36 1 1.1964 -2.4829 0.4745 37 1 0.8670 0.6925 2.2726 38 1 2.2112 -1.4098 3.8416 39 1 2.8239 0.2498 3.6441 40 1 0.7497 1.1386 4.6712 41 1 0.1365 -0.5206 4.8690 42 1 2.0767 -1.0665 6.3127 43 1 2.6906 0.5925 6.1153 44 1 0.6169 1.4827 7.1423 45 1 0.0026 -0.1761 7.3399 46 1 -0.6201 1.3975 10.6103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385187601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = -61.256920 kcal Electronic energy + Delta-G solvation = -19065.015227 eV Core-core repulsion = 16372.859056 eV Total energy + Delta-G solvation = -2692.156171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56543 -37.44867 -35.88160 -34.62349 -33.80924 -31.78525 -29.52036 -28.31154 -26.37981 -24.36328 -24.07519 -22.69659 -21.79492 -21.35310 -19.53309 -18.43418 -17.28236 -16.63649 -16.51879 -16.27112 -15.80734 -15.16102 -14.73351 -14.66852 -14.59544 -14.27218 -13.90415 -13.74970 -13.42223 -13.18860 -12.98634 -12.84995 -12.71972 -12.54083 -12.33719 -12.24105 -12.08827 -11.81665 -11.55882 -11.44670 -11.34798 -11.31883 -11.22423 -11.07467 -11.01242 -10.86007 -10.55968 -9.31460 -8.20421 -6.32085 1.38956 1.40876 1.52145 2.40532 3.12153 3.17204 3.67770 3.77434 4.05739 4.10126 4.16443 4.23391 4.27150 4.35784 4.41769 4.48140 4.55463 4.59392 4.64357 4.78204 4.86924 4.89016 4.92963 4.96220 5.00153 5.12348 5.16387 5.24278 5.24787 5.28764 5.32069 5.33808 5.35923 5.39589 5.47684 5.52057 5.54566 5.55920 5.65001 5.77314 5.86265 6.18243 6.25467 6.53395 6.85404 7.37242 8.91551 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041107 B = 0.003158 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.992876 B = 8865.464106 C = 9306.896464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.104 4.104 9 C 0.097 3.903 10 H 0.032 0.968 11 N -0.690 5.690 12 C 0.072 3.928 13 C -0.104 4.104 14 C -0.097 4.097 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.341 0.659 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.049 0.951 44 H -0.011 1.011 45 H -0.011 1.011 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -5.035 -24.701 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.142 4.142 9 C -0.012 4.012 10 H 0.050 0.950 11 N -0.322 5.322 12 C -0.057 4.057 13 C -0.142 4.142 14 C -0.135 4.135 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.187 1.187 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.161 0.839 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.008 0.992 45 H 0.007 0.993 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.930 -5.580 -24.529 25.845 hybrid contribution 0.645 0.865 1.207 1.619 sum 6.575 -4.715 -23.322 24.685 Atomic orbital electron populations 1.21760 0.94527 1.01868 1.01508 1.21656 0.96574 0.98836 0.93620 0.91858 1.21346 0.96321 1.00618 0.96159 1.21360 0.96711 0.96097 1.01437 1.20475 1.02143 0.96881 0.95762 1.20462 0.96671 1.01128 0.97203 1.21346 0.97323 0.94457 1.01092 1.21380 0.94159 0.95700 0.89989 0.95028 1.60798 1.39935 1.30100 1.01362 1.21856 0.94410 1.00572 0.88875 1.21447 0.98640 1.00598 0.93486 1.21400 0.98189 1.00014 0.93902 1.19012 0.94581 0.94441 0.93304 1.21749 1.00379 1.42972 0.93285 0.92243 1.26033 0.95864 0.94729 1.03434 1.70110 1.14143 1.44927 1.28299 0.85421 0.78353 0.78945 0.78179 1.19659 1.20619 1.18699 0.93029 0.92533 0.92396 0.91385 0.91744 0.92553 0.90885 0.91808 0.91811 0.92061 0.93071 0.92843 0.91270 0.83916 0.91462 0.95488 0.92910 0.92677 0.93229 0.93256 0.99223 0.99280 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.59 71.98 0.62 -1.78 16 2 C -0.09 -1.48 2.38 -10.07 -0.02 -1.50 16 3 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 4 C -0.11 -1.47 4.69 30.14 0.14 -1.33 16 5 C -0.12 -1.59 5.61 30.20 0.17 -1.42 16 6 C -0.12 -1.60 5.26 28.74 0.15 -1.45 16 7 C -0.12 -1.99 5.26 28.74 0.15 -1.83 16 8 C -0.10 -2.09 5.12 30.20 0.15 -1.94 16 9 C 0.10 1.98 1.71 44.46 0.08 2.06 16 10 H 0.03 0.70 6.27 -2.39 -0.01 0.68 16 11 N -0.69 -16.83 5.28 -493.95 -2.61 -19.43 16 12 C 0.07 2.05 5.39 86.30 0.47 2.51 16 13 C -0.10 -3.64 5.47 30.59 0.17 -3.48 16 14 C -0.10 -4.13 5.15 30.60 0.16 -3.98 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 20 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.05 0.94 7.40 -2.39 -0.02 0.92 16 25 H 0.06 1.09 6.27 -2.39 -0.01 1.08 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.90 6.45 -2.39 -0.02 0.88 16 29 H 0.06 0.86 6.97 -2.39 -0.02 0.84 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.84 7.47 -2.39 -0.02 0.83 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.94 7.47 -2.39 -0.02 0.92 16 35 H 0.05 1.28 6.97 -2.39 -0.02 1.26 16 36 H 0.07 1.34 6.25 -2.39 -0.01 1.32 16 37 H 0.34 7.93 7.03 -89.69 -0.63 7.30 16 38 H 0.07 1.94 7.22 -2.38 -0.02 1.93 16 39 H 0.03 0.75 8.04 -2.38 -0.02 0.74 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 44 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -63.85 341.17 3.06 -60.79 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.28 Total: 13.90 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 3.07 Total: -44.35 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.32 Total: -77.54 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -63.85 3.06 -60.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.467 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds