Wall clock time and date at job start Mon Mar 30 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 108.85361 * 2 1 4 4 C 1.50471 * 108.87970 * 118.56938 * 2 1 3 5 5 C 1.54245 * 108.51963 * 214.92238 * 4 2 1 6 6 C 1.45532 * 112.40824 * 280.01210 * 5 4 2 7 7 C 1.54241 * 112.40753 * 61.93924 * 6 5 4 8 8 C 1.50474 * 108.68067 * 279.91350 * 7 6 5 9 9 C 1.54072 * 108.87069 * 241.54298 * 2 1 3 10 10 H 1.08996 * 108.81713 * 76.65027 * 9 2 1 11 11 N 1.46895 * 108.81557 * 318.25252 * 9 2 1 12 12 C 1.46900 * 111.00134 * 155.00285 * 11 9 2 13 13 C 1.53004 * 109.47397 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46862 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46862 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47363 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00171 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00307 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46705 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47003 * 120.00378 * 20 18 16 23 23 H 1.48503 * 109.47272 * 240.00251 * 20 18 16 24 24 H 1.09008 * 109.46434 * 301.43544 * 1 2 3 25 25 H 1.08996 * 109.47642 * 61.43343 * 1 2 3 26 26 H 1.08998 * 109.47236 * 181.43899 * 1 2 3 27 27 H 1.08992 * 109.63290 * 95.21412 * 4 2 1 28 28 H 1.09000 * 109.62649 * 334.63308 * 4 2 1 29 29 H 1.09002 * 108.89218 * 159.25489 * 5 4 2 30 30 H 1.09005 * 108.81744 * 40.72111 * 5 4 2 31 31 H 1.09005 * 108.89581 * 301.18197 * 6 5 4 32 32 H 1.09004 * 108.89612 * 182.69517 * 6 5 4 33 33 H 1.09002 * 109.62887 * 39.72076 * 7 6 5 34 34 H 1.09005 * 109.63035 * 160.10789 * 7 6 5 35 35 H 1.08996 * 108.87961 * 215.02971 * 8 7 6 36 36 H 1.08995 * 108.87705 * 333.46943 * 8 7 6 37 37 H 1.00900 * 111.00046 * 278.95435 * 11 9 2 38 38 H 1.09000 * 109.47229 * 300.00532 * 12 11 9 39 39 H 1.09000 * 109.46974 * 59.99955 * 12 11 9 40 40 H 1.08998 * 109.47001 * 300.00001 * 13 12 11 41 41 H 1.09005 * 109.46453 * 59.99836 * 13 12 11 42 42 H 1.08998 * 109.47387 * 299.99855 * 14 13 12 43 43 H 1.09000 * 109.47168 * 60.00115 * 14 13 12 44 44 H 1.09000 * 109.47326 * 300.00514 * 15 14 13 45 45 H 1.09000 * 109.46814 * 59.99654 * 15 14 13 46 46 H 0.97001 * 120.00281 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0315 0.0000 4 6 2.0169 -0.6809 1.2504 5 6 3.3101 0.0183 1.7171 6 6 4.4788 -0.4197 0.9687 7 6 4.3714 -0.0912 -0.5345 8 6 3.5056 -1.1302 -1.1943 9 6 2.0283 -0.6947 -1.2818 10 1 1.9166 -0.0074 -2.1203 11 7 1.1999 -1.8822 -1.5297 12 6 1.2014 -2.2368 -2.9553 13 6 0.3295 -3.4749 -3.1738 14 6 0.3306 -3.8438 -4.6586 15 6 -0.5408 -5.0823 -4.8771 16 6 -0.5403 -5.4454 -6.3396 17 1 0.0254 -4.8524 -7.0430 18 6 -1.2610 -6.5352 -6.7797 19 7 -1.9495 -7.2577 -5.9231 20 14 -1.2598 -6.9857 -8.5926 21 1 -0.4132 -6.0224 -9.3413 22 1 -0.7161 -8.3572 -8.7614 23 1 -2.6486 -6.9358 -9.1160 24 1 -0.3632 0.5360 0.8769 25 1 -0.3634 0.4914 -0.9025 26 1 -0.3633 -1.0273 0.0258 27 1 2.2237 -1.7300 1.0393 28 1 1.2576 -0.6038 2.0286 29 1 3.4664 -0.1977 2.7740 30 1 3.1931 1.0947 1.5909 31 1 4.5904 -1.4975 1.0874 32 1 5.3629 0.0716 1.3751 33 1 3.9232 0.8940 -0.6629 34 1 5.3644 -0.1031 -0.9839 35 1 3.8838 -1.3180 -2.1991 36 1 3.5637 -2.0544 -0.6194 37 1 1.5040 -2.6599 -0.9634 38 1 0.8035 -1.4053 -3.5370 39 1 2.2214 -2.4491 -3.2758 40 1 0.7271 -4.3066 -2.5921 41 1 -0.6904 -3.2621 -2.8533 42 1 -0.0672 -3.0121 -5.2400 43 1 1.3504 -4.0564 -4.9794 44 1 -0.1426 -5.9139 -4.2957 45 1 -1.5606 -4.8702 -4.5561 46 1 -2.4569 -8.0243 -6.2328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385187603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:23 Heat of formation + Delta-G solvation = -63.801150 kcal Electronic energy + Delta-G solvation = -19062.596822 eV Core-core repulsion = 16370.330325 eV Total energy + Delta-G solvation = -2692.266497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49816 -37.44604 -35.84424 -34.49043 -33.85853 -31.94162 -29.55712 -27.90209 -26.31026 -24.63715 -23.73000 -22.96652 -21.78085 -21.28951 -19.74405 -18.43663 -16.89589 -16.57985 -16.50886 -16.11253 -15.91608 -15.52329 -14.83274 -14.54231 -14.16616 -14.06340 -13.90728 -13.65606 -13.52684 -13.30796 -13.03288 -12.92158 -12.70261 -12.51055 -12.31918 -12.27283 -12.11136 -11.86857 -11.54681 -11.39178 -11.35350 -11.34701 -11.21496 -11.08128 -10.96623 -10.83382 -10.56543 -9.18839 -8.20519 -6.32116 1.38946 1.39495 1.53073 2.40377 3.12071 3.26526 3.68914 3.78994 4.00110 4.08895 4.16940 4.25630 4.27413 4.35937 4.45489 4.53245 4.55873 4.60518 4.67857 4.81742 4.85790 4.92482 4.95383 5.00489 5.03878 5.14851 5.22205 5.25382 5.27531 5.28227 5.31395 5.35528 5.37567 5.39095 5.48943 5.55118 5.56856 5.60643 5.74547 5.77765 5.86522 6.20229 6.25645 6.53381 6.85637 7.37295 8.91581 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.043219 B = 0.003113 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.704963 B = 8991.289569 C = 9266.030297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.142 4.142 9 C 0.095 3.905 10 H 0.064 0.936 11 N -0.684 5.684 12 C 0.073 3.927 13 C -0.104 4.104 14 C -0.097 4.097 15 C 0.023 3.977 16 C -0.544 4.544 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.340 0.660 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.048 0.952 44 H -0.011 1.011 45 H -0.011 1.011 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.262 16.869 15.023 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.181 4.181 9 C -0.015 4.015 10 H 0.082 0.918 11 N -0.314 5.314 12 C -0.056 4.056 13 C -0.142 4.142 14 C -0.135 4.135 15 C -0.014 4.014 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.008 0.992 45 H 0.007 0.993 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.557 17.089 14.992 25.501 hybrid contribution 0.518 -1.121 -1.087 1.646 sum 12.075 15.967 13.904 24.374 Atomic orbital electron populations 1.21685 0.95167 1.01896 1.00014 1.20881 0.95846 0.98876 0.93345 0.90995 1.21383 0.97090 0.99486 0.96699 1.20481 0.94601 1.00522 0.99734 1.20465 0.98590 1.01191 0.95017 1.21252 0.99231 0.98971 0.95461 1.22074 0.95931 0.99649 1.00425 1.22112 0.89506 0.92027 0.97887 0.91757 1.60684 1.56554 1.08247 1.05897 1.21830 0.97479 0.96900 0.89398 1.21447 1.00010 0.96936 0.95781 1.21396 0.99111 0.97497 0.95489 1.19018 0.94011 0.93182 0.95164 1.21771 1.29315 1.12235 0.94914 0.92267 1.26030 0.94905 0.96258 1.02888 1.70115 1.32157 1.18810 1.36407 0.85375 0.78139 0.78236 0.79153 1.18557 1.20254 1.20266 0.93153 0.94364 0.92510 0.92542 0.91685 0.91921 0.91857 0.92792 0.91667 0.91350 0.91812 0.93218 0.92250 0.84158 0.91576 0.95265 0.93010 0.92732 0.93230 0.93278 0.99240 0.99304 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.39 71.98 0.60 -1.97 16 2 C -0.07 -1.22 2.06 -11.25 -0.02 -1.24 16 3 H 0.07 1.14 6.62 -2.39 -0.02 1.12 16 4 C -0.11 -1.69 5.13 30.20 0.15 -1.54 16 5 C -0.12 -1.50 5.26 28.74 0.15 -1.35 16 6 C -0.12 -1.52 5.26 28.73 0.15 -1.36 16 7 C -0.11 -1.61 5.59 30.20 0.17 -1.44 16 8 C -0.14 -2.50 4.56 30.21 0.14 -2.36 16 9 C 0.09 1.85 2.14 45.71 0.10 1.95 16 10 H 0.06 1.36 7.78 -2.39 -0.02 1.34 16 11 N -0.68 -16.06 4.70 -487.49 -2.29 -18.35 16 12 C 0.07 2.02 5.46 86.30 0.47 2.49 16 13 C -0.10 -3.60 5.48 30.59 0.17 -3.43 16 14 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 15 C 0.02 1.28 4.97 29.85 0.15 1.43 16 16 C -0.54 -32.04 9.11 25.60 0.23 -31.81 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 20 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H 0.05 0.87 8.08 -2.38 -0.02 0.85 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.30 7.31 -2.39 -0.02 1.28 16 27 H 0.06 0.97 6.70 -2.39 -0.02 0.95 16 28 H 0.06 0.99 7.67 -2.39 -0.02 0.98 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.78 7.46 -2.38 -0.02 0.76 16 31 H 0.05 0.77 7.48 -2.38 -0.02 0.75 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.96 6.97 -2.39 -0.02 0.94 16 34 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.96 7.77 -2.39 -0.02 0.94 16 36 H 0.06 1.09 6.23 -2.39 -0.01 1.07 16 37 H 0.34 7.76 7.95 -89.69 -0.71 7.05 16 38 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 39 H 0.03 0.79 7.56 -2.39 -0.02 0.77 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -63.37 343.97 3.29 -60.07 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.19 Total: 13.44 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.08 Total: -44.31 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.01 Total: -76.39 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.37 3.29 -60.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.726 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds