Wall clock time and date at job start Mon Mar 30 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.78458 * 2 1 4 4 C 1.54239 * 109.62500 * 239.52135 * 2 1 3 5 5 C 1.45542 * 112.40232 * 160.30570 * 4 2 1 6 6 C 1.54241 * 112.40722 * 61.93275 * 5 4 2 7 7 C 1.50479 * 108.52229 * 280.00613 * 6 5 4 8 8 C 1.54070 * 112.49378 * 94.15247 * 7 6 5 9 9 C 1.50471 * 109.63021 * 120.48562 * 2 1 3 10 10 H 1.09000 * 108.87720 * 93.08305 * 9 2 1 11 11 N 1.46901 * 108.79548 * 334.58586 * 9 2 1 12 12 C 1.46901 * 111.00057 * 165.99361 * 11 9 2 13 13 C 1.52997 * 109.47489 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47367 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47028 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46708 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00360 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99574 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99962 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47313 * 90.00421 * 20 18 16 22 22 H 1.48510 * 109.46839 * 210.00059 * 20 18 16 23 23 H 1.48496 * 109.47259 * 330.00045 * 20 18 16 24 24 H 1.09002 * 109.46842 * 186.44243 * 1 2 3 25 25 H 1.09002 * 109.47050 * 306.44122 * 1 2 3 26 26 H 1.08994 * 109.46971 * 66.44470 * 1 2 3 27 27 H 1.08996 * 108.89943 * 39.54931 * 4 2 1 28 28 H 1.09001 * 108.89398 * 281.05612 * 4 2 1 29 29 H 1.08999 * 108.90091 * 182.68463 * 5 4 2 30 30 H 1.08998 * 108.89530 * 301.17722 * 5 4 2 31 31 H 1.08996 * 109.63276 * 39.71566 * 6 5 4 32 32 H 1.09006 * 109.63121 * 160.29947 * 6 5 4 33 33 H 1.08997 * 108.88097 * 214.93281 * 7 6 5 34 34 H 1.09003 * 108.87326 * 333.47983 * 7 6 5 35 35 H 1.08996 * 108.81220 * 79.14971 * 8 7 6 36 36 H 1.09000 * 108.81202 * 197.42694 * 8 7 6 37 37 H 1.00901 * 111.00039 * 42.04667 * 11 9 2 38 38 H 1.09002 * 109.47307 * 300.00446 * 12 11 9 39 39 H 1.09002 * 109.46797 * 59.99807 * 12 11 9 40 40 H 1.09002 * 109.47413 * 300.00629 * 13 12 11 41 41 H 1.09006 * 109.46682 * 60.00562 * 13 12 11 42 42 H 1.09002 * 109.47227 * 300.00571 * 14 13 12 43 43 H 1.08995 * 109.47314 * 60.00214 * 14 13 12 44 44 H 1.08995 * 109.46685 * 300.00149 * 15 14 13 45 45 H 1.08998 * 109.46791 * 60.00146 * 15 14 13 46 46 H 0.96997 * 120.00045 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0481 -0.7369 -1.2520 5 6 3.4277 -0.3953 -1.5656 6 6 4.4028 -0.7944 -0.4392 7 6 4.3396 0.2517 0.6407 8 6 3.3469 -0.1158 1.7601 9 6 2.0356 -0.7190 1.2213 10 1 2.2063 -1.7656 0.9690 11 7 1.0115 -0.6449 2.2719 12 6 1.2982 -1.5955 3.3546 13 6 0.2129 -1.4889 4.4277 14 6 0.5120 -2.4785 5.5556 15 6 -0.5737 -2.3723 6.6284 16 6 -0.2788 -3.3467 7.7397 17 1 0.5952 -3.9787 7.6859 18 6 -1.1255 -3.4319 8.8245 19 7 -0.8679 -4.2818 9.7946 20 14 -2.6377 -2.3392 8.9171 21 1 -3.7875 -3.0301 8.2802 22 1 -2.9570 -2.0554 10.3395 23 1 -2.3709 -1.0634 8.2057 24 1 -0.3633 -1.0212 0.1153 25 1 -0.3633 0.6104 0.8267 26 1 -0.3633 0.4107 -0.9420 27 1 1.4177 -0.4751 -2.1018 28 1 1.9804 -1.8115 -1.0824 29 1 3.7187 -0.9079 -2.4824 30 1 3.4968 0.6804 -1.7277 31 1 4.1126 -1.7617 -0.0292 32 1 5.4167 -0.8507 -0.8354 33 1 5.3323 0.3709 1.0748 34 1 4.0333 1.1989 0.1966 35 1 3.8191 -0.8387 2.4253 36 1 3.1121 0.7827 2.3308 37 1 0.0902 -0.7988 1.8903 38 1 1.3148 -2.6089 2.9535 39 1 2.2680 -1.3631 3.7947 40 1 0.1967 -0.4755 4.8288 41 1 -0.7570 -1.7212 3.9878 42 1 0.5285 -3.4921 5.1549 43 1 1.4818 -2.2460 5.9954 44 1 -0.5905 -1.3589 7.0292 45 1 -1.5434 -2.6052 6.1883 46 1 -1.4638 -4.3420 10.5576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385187606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:28 Heat of formation + Delta-G solvation = -37.650240 kcal Electronic energy + Delta-G solvation = -19111.900135 eV Core-core repulsion = 16420.767626 eV Total energy + Delta-G solvation = -2691.132509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88021 -36.34548 -34.46480 -33.41465 -32.35982 -30.82801 -28.32027 -27.68009 -24.85673 -23.44558 -22.96529 -21.33274 -20.54219 -20.01398 -18.82496 -16.71859 -16.38364 -15.70616 -15.21749 -14.78620 -14.49954 -14.29026 -14.09688 -13.75468 -13.19970 -13.08181 -12.77779 -12.74324 -12.28750 -12.16092 -11.91468 -11.66859 -11.63185 -11.21773 -10.98035 -10.89277 -10.79793 -10.67451 -10.57599 -10.53022 -10.46076 -10.23932 -9.83665 -9.63481 -9.41844 -9.10906 -8.49358 -8.30474 -6.00068 -3.97466 3.34068 3.41153 3.46299 4.11991 4.35090 4.46982 4.49596 4.72765 4.84559 4.91095 4.99190 5.10731 5.16267 5.27443 5.33774 5.37334 5.41161 5.52542 5.56964 5.62173 5.63925 5.74116 5.81453 5.86024 5.88343 5.94689 5.97581 6.05050 6.09141 6.09353 6.15951 6.23058 6.25294 6.30879 6.44198 6.71869 6.81897 6.96639 7.20434 7.38586 7.47559 7.52213 7.85524 8.59582 9.05395 9.63066 11.13634 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040346 B = 0.003327 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.830207 B = 8413.961832 C = 8805.473597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.096 3.904 10 H 0.034 0.966 11 N -0.695 5.695 12 C 0.057 3.943 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.014 4.014 16 C -0.519 4.519 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.344 0.656 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.009 0.991 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.338 9.805 -24.201 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.148 4.148 9 C -0.014 4.014 10 H 0.052 0.948 11 N -0.330 5.330 12 C -0.072 4.072 13 C -0.156 4.156 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.088 0.912 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.189 1.189 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.166 0.834 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.028 0.972 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.555 10.264 -23.706 26.915 hybrid contribution -1.033 -0.465 -0.161 1.144 sum 6.522 9.799 -23.867 26.612 Atomic orbital electron populations 1.21872 0.95241 1.01740 1.02121 1.20978 0.95558 1.00216 0.93652 0.90430 1.20570 0.96525 1.00447 0.97724 1.20484 0.95275 1.01407 0.98283 1.21370 0.98901 0.99528 0.95936 1.21327 0.98961 0.98900 0.96277 1.21933 0.93846 1.01543 0.97444 1.21264 0.92044 0.97518 0.90548 0.94785 1.60810 1.05652 1.54844 1.11706 1.22081 1.00136 0.92725 0.92262 1.21665 0.97193 1.00910 0.95814 1.21413 1.00185 0.97275 0.95046 1.19570 0.94122 0.97106 0.94330 1.21202 1.10957 1.20705 1.02862 0.91151 1.25056 0.97892 0.95222 0.95509 1.69924 1.38278 1.36702 1.09668 0.86754 0.83477 0.81879 0.77041 1.20376 1.21451 1.18942 0.92938 0.90994 0.92726 0.92163 0.92356 0.92533 0.92188 0.91678 0.92141 0.92329 0.92132 0.92502 0.91074 0.83407 0.95721 0.91208 0.91714 0.92930 0.93151 0.92857 0.96655 0.97242 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.71 37.16 0.29 -1.01 16 2 C -0.09 -0.76 2.36 -91.23 -0.21 -0.97 16 3 H 0.08 0.71 6.97 -51.93 -0.36 0.35 16 4 C -0.11 -0.90 4.68 -29.60 -0.14 -1.04 16 5 C -0.12 -0.85 5.26 -29.60 -0.16 -1.00 16 6 C -0.12 -0.94 5.61 -27.34 -0.15 -1.09 16 7 C -0.12 -0.98 5.32 -27.43 -0.15 -1.13 16 8 C -0.11 -1.13 4.78 -25.62 -0.12 -1.25 16 9 C 0.10 1.01 1.89 -68.42 -0.13 0.88 16 10 H 0.03 0.39 6.48 -51.93 -0.34 0.05 16 11 N -0.70 -8.50 5.82 -107.48 -0.63 -9.12 16 12 C 0.06 0.80 5.45 -3.82 -0.02 0.78 16 13 C -0.12 -1.95 5.47 -26.73 -0.15 -2.10 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 16 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 20 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.05 0.45 7.46 -51.93 -0.39 0.06 16 25 H 0.07 0.67 7.17 -51.93 -0.37 0.29 16 26 H 0.05 0.41 8.01 -51.93 -0.42 -0.01 16 27 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 28 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 7.47 -51.93 -0.39 0.03 16 31 H 0.06 0.57 6.98 -51.93 -0.36 0.20 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 6.63 -51.93 -0.34 0.15 16 35 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 36 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.34 3.95 5.42 -39.29 -0.21 3.74 16 38 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.07 1.00 7.00 -51.93 -0.36 0.64 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 45 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -30.49 337.52 -9.94 -40.43 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.88 Total: -1.80 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -1.62 Total: -24.38 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.15 Total: -36.96 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.49 -9.94 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.780 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds