Wall clock time and date at job start Mon Mar 30 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.78458 * 2 1 4 4 C 1.54239 * 109.62500 * 239.52135 * 2 1 3 5 5 C 1.45542 * 112.40232 * 160.30570 * 4 2 1 6 6 C 1.54241 * 112.40722 * 61.93275 * 5 4 2 7 7 C 1.50479 * 108.52229 * 280.00613 * 6 5 4 8 8 C 1.54070 * 112.49378 * 94.15247 * 7 6 5 9 9 C 1.50471 * 109.63021 * 120.48562 * 2 1 3 10 10 H 1.09000 * 108.87720 * 93.08305 * 9 2 1 11 11 N 1.46901 * 108.79548 * 334.58586 * 9 2 1 12 12 C 1.46901 * 111.00057 * 165.99361 * 11 9 2 13 13 C 1.52997 * 109.47489 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47367 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47028 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46708 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00360 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99574 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99962 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47313 * 90.00421 * 20 18 16 22 22 H 1.48510 * 109.46839 * 210.00059 * 20 18 16 23 23 H 1.48496 * 109.47259 * 330.00045 * 20 18 16 24 24 H 1.09002 * 109.46842 * 186.44243 * 1 2 3 25 25 H 1.09002 * 109.47050 * 306.44122 * 1 2 3 26 26 H 1.08994 * 109.46971 * 66.44470 * 1 2 3 27 27 H 1.08996 * 108.89943 * 39.54931 * 4 2 1 28 28 H 1.09001 * 108.89398 * 281.05612 * 4 2 1 29 29 H 1.08999 * 108.90091 * 182.68463 * 5 4 2 30 30 H 1.08998 * 108.89530 * 301.17722 * 5 4 2 31 31 H 1.08996 * 109.63276 * 39.71566 * 6 5 4 32 32 H 1.09006 * 109.63121 * 160.29947 * 6 5 4 33 33 H 1.08997 * 108.88097 * 214.93281 * 7 6 5 34 34 H 1.09003 * 108.87326 * 333.47983 * 7 6 5 35 35 H 1.08996 * 108.81220 * 79.14971 * 8 7 6 36 36 H 1.09000 * 108.81202 * 197.42694 * 8 7 6 37 37 H 1.00901 * 111.00039 * 42.04667 * 11 9 2 38 38 H 1.09002 * 109.47307 * 300.00446 * 12 11 9 39 39 H 1.09002 * 109.46797 * 59.99807 * 12 11 9 40 40 H 1.09002 * 109.47413 * 300.00629 * 13 12 11 41 41 H 1.09006 * 109.46682 * 60.00562 * 13 12 11 42 42 H 1.09002 * 109.47227 * 300.00571 * 14 13 12 43 43 H 1.08995 * 109.47314 * 60.00214 * 14 13 12 44 44 H 1.08995 * 109.46685 * 300.00149 * 15 14 13 45 45 H 1.08998 * 109.46791 * 60.00146 * 15 14 13 46 46 H 0.96997 * 120.00045 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0481 -0.7369 -1.2520 5 6 3.4277 -0.3953 -1.5656 6 6 4.4028 -0.7944 -0.4392 7 6 4.3396 0.2517 0.6407 8 6 3.3469 -0.1158 1.7601 9 6 2.0356 -0.7190 1.2213 10 1 2.2063 -1.7656 0.9690 11 7 1.0115 -0.6449 2.2719 12 6 1.2982 -1.5955 3.3546 13 6 0.2129 -1.4889 4.4277 14 6 0.5120 -2.4785 5.5556 15 6 -0.5737 -2.3723 6.6284 16 6 -0.2788 -3.3467 7.7397 17 1 0.5952 -3.9787 7.6859 18 6 -1.1255 -3.4319 8.8245 19 7 -0.8679 -4.2818 9.7946 20 14 -2.6377 -2.3392 8.9171 21 1 -3.7875 -3.0301 8.2802 22 1 -2.9570 -2.0554 10.3395 23 1 -2.3709 -1.0634 8.2057 24 1 -0.3633 -1.0212 0.1153 25 1 -0.3633 0.6104 0.8267 26 1 -0.3633 0.4107 -0.9420 27 1 1.4177 -0.4751 -2.1018 28 1 1.9804 -1.8115 -1.0824 29 1 3.7187 -0.9079 -2.4824 30 1 3.4968 0.6804 -1.7277 31 1 4.1126 -1.7617 -0.0292 32 1 5.4167 -0.8507 -0.8354 33 1 5.3323 0.3709 1.0748 34 1 4.0333 1.1989 0.1966 35 1 3.8191 -0.8387 2.4253 36 1 3.1121 0.7827 2.3308 37 1 0.0902 -0.7988 1.8903 38 1 1.3148 -2.6089 2.9535 39 1 2.2680 -1.3631 3.7947 40 1 0.1967 -0.4755 4.8288 41 1 -0.7570 -1.7212 3.9878 42 1 0.5285 -3.4921 5.1549 43 1 1.4818 -2.2460 5.9954 44 1 -0.5905 -1.3589 7.0292 45 1 -1.5434 -2.6052 6.1883 46 1 -1.4638 -4.3420 10.5576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385187606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:27 Heat of formation + Delta-G solvation = -54.568913 kcal Electronic energy + Delta-G solvation = -19112.633784 eV Core-core repulsion = 16420.767626 eV Total energy + Delta-G solvation = -2691.866157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64038 -37.49424 -35.90447 -34.51100 -33.93623 -32.10554 -29.74789 -28.48466 -26.31678 -24.47863 -23.73378 -22.69615 -21.78686 -21.23595 -19.62998 -18.86877 -17.40914 -16.50307 -16.39471 -16.20739 -15.80009 -15.23824 -15.05141 -14.75472 -14.61592 -14.48364 -13.82518 -13.69440 -13.50290 -13.37195 -13.26043 -12.89430 -12.79083 -12.38224 -12.23170 -12.18348 -11.86534 -11.75064 -11.53663 -11.48082 -11.38044 -11.36979 -11.27819 -11.19817 -11.01005 -10.96153 -10.76981 -9.29589 -8.30384 -6.34695 1.35335 1.37743 1.50512 2.36258 3.04887 3.18361 3.66292 3.76276 4.04901 4.08007 4.14832 4.21575 4.26001 4.31601 4.37965 4.46733 4.53824 4.57156 4.59271 4.71914 4.73478 4.87704 4.89322 4.94555 4.98804 5.06944 5.14017 5.16206 5.19531 5.23412 5.26362 5.29147 5.33434 5.39928 5.41490 5.48459 5.54467 5.56890 5.58918 5.64485 5.67778 6.16658 6.28666 6.53855 6.73553 7.30173 8.86753 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040346 B = 0.003327 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.830207 B = 8413.961832 C = 8805.473597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.098 3.902 10 H 0.027 0.973 11 N -0.696 5.696 12 C 0.066 3.934 13 C -0.105 4.105 14 C -0.095 4.095 15 C -0.011 4.011 16 C -0.536 4.536 17 H 0.029 0.971 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.246 1.246 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.349 0.651 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 11.547 -26.268 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.011 4.011 10 H 0.045 0.955 11 N -0.332 5.332 12 C -0.063 4.063 13 C -0.143 4.143 14 C -0.133 4.133 15 C -0.049 4.049 16 C -0.574 4.574 17 H 0.047 0.953 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.170 1.170 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.597 12.010 -25.798 29.211 hybrid contribution -0.642 -1.079 0.505 1.354 sum 5.955 10.930 -25.293 28.190 Atomic orbital electron populations 1.21849 0.94841 1.01579 1.02552 1.20958 0.95877 1.00020 0.93237 0.90454 1.20542 0.97098 0.99801 0.97448 1.20479 0.94674 1.01885 0.98311 1.21369 0.99739 0.98647 0.95950 1.21297 0.98494 0.99368 0.95856 1.21921 0.94242 1.00558 0.97939 1.21314 0.91661 0.97434 0.90736 0.95489 1.60797 1.06492 1.53978 1.11929 1.21874 0.98951 0.93197 0.92323 1.21487 0.98431 0.99398 0.95016 1.21292 0.98443 0.98310 0.95278 1.19536 0.95830 0.95601 0.93923 1.21574 1.09752 1.21233 1.04844 0.95309 1.26097 1.01765 0.96862 0.94887 1.70081 1.40036 1.38747 1.10608 0.85583 0.78797 0.80256 0.77563 1.18986 1.20870 1.16974 0.93089 0.91750 0.91392 0.91058 0.93059 0.91596 0.91590 0.92801 0.91151 0.91997 0.91475 0.93758 0.92204 0.82785 0.95834 0.91745 0.91766 0.91973 0.93670 0.93655 0.96316 0.96338 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.71 71.98 0.55 -1.71 16 2 C -0.08 -1.31 2.36 -11.19 -0.03 -1.33 16 3 H 0.08 1.26 6.97 -2.39 -0.02 1.24 16 4 C -0.11 -1.50 4.68 28.74 0.13 -1.36 16 5 C -0.12 -1.42 5.26 28.74 0.15 -1.27 16 6 C -0.12 -1.68 5.61 30.20 0.17 -1.51 16 7 C -0.11 -1.74 5.32 30.14 0.16 -1.58 16 8 C -0.11 -2.17 4.78 31.32 0.15 -2.02 16 9 C 0.10 1.95 1.89 44.46 0.08 2.03 16 10 H 0.03 0.59 6.48 -2.39 -0.02 0.57 16 11 N -0.70 -16.12 5.82 -493.94 -2.87 -18.99 16 12 C 0.07 1.80 5.45 86.30 0.47 2.27 16 13 C -0.11 -3.33 5.47 30.59 0.17 -3.17 16 14 C -0.09 -3.84 5.15 30.60 0.16 -3.68 16 15 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 16 C -0.54 -32.20 9.66 25.60 0.25 -31.95 16 17 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 18 C 0.00 0.01 5.47 84.65 0.46 0.47 16 19 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 20 Si 0.96 45.42 27.47 68.60 1.88 47.31 16 21 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 24 H 0.05 0.78 7.46 -2.39 -0.02 0.76 16 25 H 0.06 1.07 7.17 -2.39 -0.02 1.05 16 26 H 0.07 0.84 8.01 -2.39 -0.02 0.82 16 27 H 0.07 0.83 7.88 -2.39 -0.02 0.81 16 28 H 0.05 0.77 7.47 -2.39 -0.02 0.76 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.75 7.47 -2.39 -0.02 0.73 16 31 H 0.05 0.88 6.98 -2.39 -0.02 0.87 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.96 6.63 -2.39 -0.02 0.95 16 35 H 0.04 0.97 7.45 -2.39 -0.02 0.96 16 36 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.35 7.43 5.42 -89.69 -0.49 6.95 16 38 H 0.02 0.65 8.09 -2.39 -0.02 0.63 16 39 H 0.06 1.83 7.00 -2.39 -0.02 1.81 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 45 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 46 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -65.85 337.52 2.68 -63.17 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.37 Total: 14.95 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 3.00 Total: -45.23 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -2.58 Total: -80.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -65.85 2.68 -63.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.598 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds