Wall clock time and date at job start Mon Mar 30 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.62746 * 2 1 4 4 C 1.50468 * 109.62966 * 120.38762 * 2 1 3 5 5 C 1.54067 * 112.49841 * 214.05555 * 4 2 1 6 6 C 1.54062 * 112.82019 * 318.28711 * 5 4 2 7 7 C 1.50480 * 112.49604 * 318.27961 * 6 5 4 8 8 H 1.09002 * 109.62353 * 334.24533 * 7 6 5 9 9 N 1.46890 * 109.63035 * 213.86305 * 7 6 5 10 10 C 1.46901 * 111.00688 * 84.99830 * 9 7 6 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00420 * 18 16 14 21 21 H 1.48498 * 109.46942 * 240.00334 * 18 16 14 22 22 C 1.54242 * 108.52193 * 94.14869 * 7 6 5 23 23 C 1.45545 * 112.40340 * 280.01599 * 22 7 6 24 24 H 1.08993 * 109.46801 * 299.61153 * 1 2 3 25 25 H 1.08996 * 109.46855 * 59.61208 * 1 2 3 26 26 H 1.08999 * 109.47158 * 179.60977 * 1 2 3 27 27 H 1.09001 * 108.87485 * 93.28048 * 4 2 1 28 28 H 1.09001 * 108.79963 * 334.78104 * 4 2 1 29 29 H 1.08998 * 108.81330 * 197.42418 * 5 4 2 30 30 H 1.08998 * 108.72381 * 79.08566 * 5 4 2 31 31 H 1.09002 * 108.87805 * 197.50535 * 6 5 4 32 32 H 1.08996 * 108.80153 * 78.99914 * 6 5 4 33 33 H 1.00905 * 111.00280 * 208.95815 * 9 7 6 34 34 H 1.09002 * 109.46980 * 59.99769 * 10 9 7 35 35 H 1.09001 * 109.46628 * 300.00190 * 10 9 7 36 36 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 37 37 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 40 40 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 41 41 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 42 42 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 43 43 H 1.08997 * 108.89773 * 40.77342 * 22 7 6 44 44 H 1.08995 * 108.89354 * 159.26480 * 22 7 6 45 45 H 1.08996 * 108.89923 * 301.17791 * 23 22 7 46 46 H 1.09009 * 108.81358 * 182.63934 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0355 -0.7169 1.2225 5 6 3.3443 -0.1098 1.7630 6 6 4.3378 0.2600 0.6451 7 6 4.4058 -0.7866 -0.4341 8 1 4.1210 -1.7552 -0.0232 9 7 5.7732 -0.8590 -0.9658 10 6 6.6113 -1.7433 -0.1451 11 6 8.0247 -1.7926 -0.7284 12 6 8.8977 -2.7132 0.1268 13 6 10.3114 -2.7620 -0.4563 14 6 11.1713 -3.6682 0.3865 15 1 10.7514 -4.1605 1.2513 16 6 12.4939 -3.8697 0.0530 17 7 13.0051 -3.2707 -1.0002 18 14 13.5600 -4.9925 1.0981 19 1 12.7529 -5.5401 2.2180 20 1 14.0693 -6.1098 0.2629 21 1 14.7052 -4.2206 1.6439 22 6 3.4314 -0.3910 -1.5623 23 6 2.0523 -0.7363 -1.2506 24 1 -0.3633 0.5078 0.8934 25 1 -0.3633 0.5198 -0.8865 26 1 -0.3633 -1.0276 -0.0070 27 1 2.2096 -1.7631 0.9711 28 1 1.2743 -0.6636 2.0009 29 1 3.8175 -0.8310 2.4294 30 1 3.1046 0.7887 2.3316 31 1 5.3295 0.3822 1.0808 32 1 4.0296 1.2059 0.1999 33 1 5.7710 -1.1555 -1.9303 34 1 6.1847 -2.7464 -0.1400 35 1 6.6527 -1.3609 0.8748 36 1 8.4511 -0.7895 -0.7331 37 1 7.9837 -2.1746 -1.7484 38 1 8.4715 -3.7164 0.1320 39 1 8.9387 -2.3306 1.1467 40 1 10.2707 -3.1443 -1.4762 41 1 10.7373 -1.7587 -0.4610 42 1 13.9355 -3.4127 -1.2351 43 1 3.4978 0.6847 -1.7251 44 1 3.7252 -0.9035 -2.4783 45 1 1.9873 -1.8110 -1.0805 46 1 1.4235 -0.4756 -2.1021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385197937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:22 Heat of formation + Delta-G solvation = -51.315834 kcal Electronic energy + Delta-G solvation = -18789.438537 eV Core-core repulsion = 16097.713444 eV Total energy + Delta-G solvation = -2691.725093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66305 -36.43152 -34.37718 -32.78328 -32.60545 -31.09210 -28.26201 -26.99790 -24.83450 -23.39195 -23.22298 -21.30411 -20.58592 -19.91757 -19.12580 -16.34859 -16.04669 -15.43392 -14.97405 -14.89971 -14.72675 -14.40906 -14.00036 -13.53048 -13.34000 -13.07073 -13.05422 -12.46940 -12.33244 -12.04509 -11.70472 -11.62468 -11.45615 -11.16369 -10.97944 -10.78587 -10.73155 -10.64834 -10.56424 -10.45051 -10.40889 -10.36789 -10.17270 -9.59171 -9.21578 -8.95448 -8.31516 -8.28596 -5.95389 -3.97406 3.33390 3.40551 3.45013 4.12603 4.35343 4.49112 4.52049 4.65167 4.86126 4.98499 5.00326 5.15998 5.20781 5.29980 5.35332 5.40033 5.44422 5.49219 5.54868 5.61863 5.70078 5.75448 5.79988 5.88564 5.96742 5.97999 6.01967 6.03585 6.09571 6.18045 6.21225 6.26191 6.33987 6.34397 6.57168 6.87534 7.01612 7.14038 7.30503 7.52600 7.74459 7.90506 8.06151 8.49104 9.10419 9.66333 11.16037 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.051263 B = 0.002862 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.076328 B = 9780.397803 C =10042.800792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.109 4.109 7 C 0.091 3.909 8 H 0.044 0.956 9 N -0.689 5.689 10 C 0.061 3.939 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.339 0.661 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.892 6.994 1.135 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.147 4.147 7 C -0.019 4.019 8 H 0.062 0.938 9 N -0.320 5.320 10 C -0.068 4.068 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.525 7.580 1.360 25.705 hybrid contribution 0.396 -1.515 0.255 1.587 sum -24.129 6.065 1.615 24.932 Atomic orbital electron populations 1.21889 0.95357 1.01608 1.01465 1.20916 0.95038 1.00141 0.94828 0.90834 1.21435 0.96792 0.99873 0.97191 1.21914 0.95128 1.00602 0.97899 1.21367 0.99405 0.98487 0.95488 1.21241 0.87938 0.97900 0.94834 0.93833 1.60587 1.10024 1.55235 1.06182 1.22088 0.93840 0.93253 0.97629 1.21634 0.93199 1.01073 0.99424 1.21585 0.97739 0.97114 0.98236 1.19098 0.89494 0.97013 0.96050 1.21334 0.95237 1.27458 1.11659 0.92741 1.25041 0.98135 0.96155 0.95277 1.69979 1.13983 1.43505 1.26123 0.86558 0.80496 0.80631 0.80447 1.19778 1.21056 1.21021 1.20642 0.94715 1.02283 0.97927 1.20510 0.96234 1.00321 0.97767 0.92787 0.92840 0.92834 0.92271 0.92382 0.92382 0.92328 0.91223 0.92107 0.84320 0.95754 0.91394 0.91706 0.92819 0.93742 0.93497 0.96750 0.96608 0.93121 0.91493 0.92229 0.92339 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.88 37.16 0.33 -0.63 16 2 C -0.09 -0.69 2.39 -91.23 -0.22 -0.91 16 3 H 0.07 0.60 6.97 -51.93 -0.36 0.23 16 4 C -0.12 -0.94 4.89 -27.44 -0.13 -1.07 16 5 C -0.12 -1.07 5.85 -25.62 -0.15 -1.21 16 6 C -0.11 -1.15 4.97 -27.44 -0.14 -1.29 16 7 C 0.09 0.98 2.16 -68.33 -0.15 0.83 16 8 H 0.04 0.50 6.67 -51.93 -0.35 0.16 16 9 N -0.69 -8.84 6.21 -107.38 -0.67 -9.50 16 10 C 0.06 0.89 5.42 -3.83 -0.02 0.87 16 11 C -0.12 -2.03 5.47 -26.74 -0.15 -2.18 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.12 -1.07 4.82 -29.60 -0.14 -1.21 16 23 C -0.11 -0.88 4.69 -29.60 -0.14 -1.02 16 24 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.51 6.64 -51.93 -0.34 0.17 16 28 H 0.06 0.43 7.67 -51.93 -0.40 0.04 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.85 7.20 -51.93 -0.37 0.48 16 32 H 0.06 0.62 6.63 -51.93 -0.34 0.28 16 33 H 0.34 4.09 8.08 -39.29 -0.32 3.77 16 34 H 0.02 0.35 8.06 -51.93 -0.42 -0.06 16 35 H 0.07 1.01 7.47 -51.93 -0.39 0.63 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 44 H 0.06 0.53 7.64 -51.93 -0.40 0.14 16 45 H 0.06 0.48 7.47 -51.93 -0.39 0.10 16 46 H 0.06 0.44 7.98 -51.92 -0.41 0.02 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -30.04 346.11 -10.40 -40.44 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -9.07 Total: -2.59 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -1.59 Total: -23.77 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.07 Total: -36.35 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.04 -10.40 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.880 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds