Wall clock time and date at job start Mon Mar 30 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00426 * 2 1 3 5 5 C 1.53006 * 109.47269 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46542 * 59.99862 * 5 4 2 7 7 C 1.52997 * 109.47452 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.46832 * 300.00199 * 7 6 5 9 9 N 1.46899 * 109.47254 * 180.02562 * 7 6 5 10 10 C 1.46900 * 110.99567 * 85.00010 * 9 7 6 11 11 C 1.53007 * 109.46744 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46968 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46979 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47040 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99818 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99816 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46673 * 90.00453 * 18 16 14 20 20 H 1.48496 * 109.47109 * 210.00364 * 18 16 14 21 21 H 1.48494 * 109.47229 * 330.00778 * 18 16 14 22 22 C 1.52992 * 109.47224 * 119.99917 * 2 1 3 23 23 H 1.08998 * 109.46862 * 60.00859 * 22 2 1 24 24 C 1.52997 * 109.47482 * 300.00294 * 22 2 1 25 25 H 1.09004 * 109.47552 * 299.99728 * 1 2 3 26 26 H 1.09004 * 109.47298 * 59.99857 * 1 2 3 27 27 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99950 * 4 2 1 29 29 H 1.09004 * 109.47261 * 59.99694 * 4 2 1 30 30 H 1.09000 * 109.47192 * 179.97438 * 5 4 2 31 31 H 1.08998 * 109.46876 * 300.00443 * 5 4 2 32 32 H 1.09001 * 109.46812 * 60.00243 * 6 5 4 33 33 H 1.09002 * 109.46935 * 179.97438 * 6 5 4 34 34 H 1.00903 * 110.99887 * 208.95238 * 9 7 6 35 35 H 1.08995 * 109.47661 * 299.99688 * 10 9 7 36 36 H 1.08995 * 109.47175 * 60.00477 * 10 9 7 37 37 H 1.09003 * 109.47186 * 300.00128 * 11 10 9 38 38 H 1.09005 * 109.46902 * 60.00320 * 11 10 9 39 39 H 1.09003 * 109.47292 * 300.00088 * 12 11 10 40 40 H 1.08993 * 109.46943 * 59.99992 * 12 11 10 41 41 H 1.09003 * 109.46991 * 300.00040 * 13 12 11 42 42 H 1.09003 * 109.47574 * 60.00050 * 13 12 11 43 43 H 0.97005 * 119.99579 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.47153 * 59.99783 * 24 22 2 45 45 H 1.09001 * 109.46832 * 299.99974 * 24 22 2 46 46 H 1.09004 * 109.47261 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0804 -1.4416 -0.0003 7 6 3.5704 -0.7205 1.2489 8 1 3.9335 0.3073 1.2487 9 7 4.0610 -1.4124 2.4483 10 6 5.4082 -0.9504 2.8085 11 6 5.8839 -1.6914 4.0597 12 6 7.2872 -1.2108 4.4345 13 6 7.7631 -1.9523 5.6853 14 6 9.1457 -1.4793 6.0541 15 1 9.6357 -0.7250 5.4564 16 6 9.7845 -2.0088 7.1552 17 7 9.1876 -2.9271 7.8834 18 14 11.4985 -1.4230 7.6119 19 1 11.3960 -0.2664 8.5376 20 1 12.2375 -2.5258 8.2775 21 1 12.2245 -1.0112 6.3838 22 6 2.0400 -0.7212 1.2492 23 1 1.6767 -1.7489 1.2491 24 6 1.5300 0.0000 2.4984 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6766 -1.7488 -1.2494 29 1 1.6766 -0.2073 -2.1393 30 1 3.9333 -1.2348 -2.1394 31 1 3.9329 0.3072 -1.2497 32 1 3.7174 -2.4694 -0.0003 33 1 5.1705 -1.4416 -0.0008 34 1 3.4208 -1.2968 3.2197 35 1 6.0933 -1.1506 1.9848 36 1 5.3836 0.1208 3.0085 37 1 5.1986 -1.4908 4.8833 38 1 5.9084 -2.7628 3.8601 39 1 7.9722 -1.4117 3.6107 40 1 7.2631 -0.1395 4.6338 41 1 7.0782 -1.7517 6.5092 42 1 7.7873 -3.0236 5.4856 43 1 9.6373 -3.2999 8.6578 44 1 0.4400 -0.0001 2.4985 45 1 1.8933 1.0276 2.4984 46 1 1.8930 -0.5142 3.3884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385301336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:44 Heat of formation + Delta-G solvation = -55.190375 kcal Electronic energy + Delta-G solvation = -18902.778041 eV Core-core repulsion = 16210.884935 eV Total energy + Delta-G solvation = -2691.893106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71873 -36.17815 -34.09065 -33.26014 -32.31669 -30.42023 -27.96404 -26.90131 -25.64054 -24.14816 -21.59493 -21.36661 -20.64088 -20.03902 -19.69886 -16.27464 -15.90842 -15.34905 -14.98004 -14.81339 -14.50789 -14.40395 -14.26350 -13.53101 -13.14001 -12.92198 -12.54930 -12.33983 -12.32032 -12.01784 -11.92608 -11.64146 -11.47941 -11.40695 -11.23101 -10.98367 -10.94448 -10.66944 -10.53863 -10.42429 -10.38716 -10.22025 -10.04815 -9.58793 -9.21110 -8.96112 -8.30728 -8.27387 -5.95153 -3.97237 3.34417 3.40358 3.44106 4.12308 4.46785 4.48499 4.50019 4.64131 4.87705 4.98761 5.18358 5.20745 5.24487 5.29524 5.33831 5.40185 5.44511 5.50713 5.54642 5.59468 5.63617 5.70675 5.77554 5.79761 5.88682 5.95549 5.97773 6.01369 6.11001 6.14668 6.21034 6.21504 6.33904 6.38771 6.57317 6.87776 7.01831 7.14124 7.30706 7.53575 7.74360 7.90712 8.06352 8.49252 9.10377 9.66431 11.16237 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.047006 B = 0.002994 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.526580 B = 9348.794803 C = 9663.071293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.093 3.907 8 H 0.040 0.960 9 N -0.690 5.690 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.087 4.087 23 H 0.078 0.922 24 C -0.156 4.156 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.339 0.661 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.571 5.693 -17.327 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.017 4.017 8 H 0.058 0.942 9 N -0.323 5.323 10 C -0.068 4.068 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.106 4.106 23 H 0.096 0.904 24 C -0.213 4.213 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.313 5.032 -17.509 25.132 hybrid contribution 0.828 1.166 0.757 1.618 sum -16.485 6.198 -16.751 24.306 Atomic orbital electron populations 1.21887 0.95299 1.01830 1.01572 1.21127 0.95372 0.99445 0.94427 0.91424 1.21601 0.95666 1.00691 0.97173 1.21546 0.95500 1.00701 0.98056 1.21528 1.00497 0.99772 0.92783 1.21521 0.93461 0.95481 0.91255 0.94224 1.60576 1.04294 1.60186 1.07198 1.22096 0.89648 0.96472 0.98620 1.21638 0.98070 1.00434 0.95193 1.21585 0.93382 0.99614 1.00099 1.19091 0.95615 0.95463 0.91427 1.21299 1.01304 1.22207 1.10980 0.92792 1.25038 0.97916 0.95138 0.96472 1.69975 1.37878 1.28145 1.17600 0.86611 0.84618 0.78304 0.78572 1.20717 1.21226 1.19906 1.21308 0.94596 1.00243 0.94458 0.90393 1.21972 1.01366 1.00367 0.97609 0.92389 0.92920 0.92685 0.91900 0.92261 0.91968 0.92283 0.91357 0.92017 0.84008 0.91390 0.95788 0.92876 0.91692 0.93483 0.93749 0.96769 0.96608 0.93068 0.92059 0.92861 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.84 37.16 0.33 -0.70 16 2 C -0.08 -0.68 2.25 -90.63 -0.20 -0.88 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 5 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 6 C -0.11 -1.14 5.42 -26.73 -0.15 -1.29 16 7 C 0.09 1.02 1.97 -67.69 -0.13 0.89 16 8 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 9 N -0.69 -8.95 6.31 -106.70 -0.67 -9.62 16 10 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 11 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.09 -0.80 1.92 -90.60 -0.17 -0.98 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 C -0.16 -1.36 8.60 37.16 0.32 -1.04 16 25 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 34 H 0.34 4.19 6.17 -39.29 -0.24 3.95 16 35 H 0.07 1.02 7.44 -51.93 -0.39 0.63 16 36 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.54 6.21 -51.93 -0.32 0.22 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -30.05 348.54 -10.00 -40.05 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -9.13 Total: -2.35 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.16 Total: -23.54 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.06 Total: -36.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.05 -10.00 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385301336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.140 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds