Wall clock time and date at job start Mon Mar 30 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47880 * 2 1 4 4 C 1.53005 * 109.46833 * 119.99783 * 2 1 3 5 5 C 1.53002 * 109.47102 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47551 * 300.00210 * 5 4 2 7 7 C 1.53005 * 109.47089 * 59.99782 * 6 5 4 8 8 C 1.52999 * 109.47131 * 239.99365 * 2 1 3 9 9 H 1.09000 * 109.47517 * 300.00534 * 8 2 1 10 10 C 1.53005 * 109.46921 * 60.00472 * 8 2 1 11 11 N 1.46896 * 109.46965 * 184.99621 * 10 8 2 12 12 C 1.46907 * 111.00045 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47483 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47364 * 300.00648 * 1 2 3 26 26 H 1.09000 * 109.46785 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.47165 * 299.99636 * 4 2 1 28 28 H 1.09000 * 109.46974 * 59.99981 * 4 2 1 29 29 H 1.09000 * 109.46862 * 60.00353 * 5 4 2 30 30 H 1.09000 * 109.47054 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47573 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46894 * 300.00446 * 6 5 4 33 33 H 1.08998 * 109.47165 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46974 * 60.00072 * 7 6 5 35 35 H 1.09003 * 109.46875 * 65.00003 * 10 8 2 36 36 H 1.08995 * 109.47205 * 304.99761 * 10 8 2 37 37 H 1.00898 * 111.00238 * 56.05313 * 11 10 8 38 38 H 1.09002 * 109.46929 * 60.00137 * 12 11 10 39 39 H 1.09001 * 109.46786 * 300.00498 * 12 11 10 40 40 H 1.09002 * 109.47153 * 59.99996 * 13 12 11 41 41 H 1.09001 * 109.46832 * 300.00187 * 13 12 11 42 42 H 1.09002 * 109.47103 * 59.99753 * 14 13 12 43 43 H 1.08998 * 109.46862 * 300.00565 * 14 13 12 44 44 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 45 45 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 46 46 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0001 7 6 3.5696 -0.7222 -1.2494 8 6 2.0400 -0.7214 -1.2491 9 1 1.6766 -1.7490 -1.2491 10 6 1.5300 -0.0001 -2.4985 11 7 1.9187 -0.7589 -3.6948 12 6 1.4444 -0.0950 -4.9164 13 6 1.8667 -0.9131 -6.1384 14 6 1.3733 -0.2213 -7.4107 15 6 1.7962 -1.0391 -8.6326 16 6 1.3096 -0.3580 -9.8858 17 1 0.7546 0.5659 -9.8175 18 6 1.5739 -0.9139 -11.1196 19 7 1.1496 -0.3193 -12.2132 20 14 2.5344 -2.5116 -11.2377 21 1 1.5928 -3.6593 -11.1988 22 1 3.2953 -2.5386 -12.5126 23 1 3.4787 -2.6072 -10.0955 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 -0.2073 2.1393 28 1 1.6765 -1.7489 1.2493 29 1 3.9336 0.3057 1.2489 30 1 3.9332 -1.2360 2.1389 31 1 5.1695 -1.4435 -0.0005 32 1 3.7158 -2.4709 0.0001 33 1 3.9323 -1.2365 -2.1393 34 1 3.9333 0.3053 -1.2496 35 1 1.9647 0.9984 -2.5444 36 1 0.4438 0.0781 -2.4549 37 1 1.5818 -1.7087 -3.6459 38 1 1.8781 0.9031 -4.9793 39 1 0.3574 -0.0177 -4.8893 40 1 1.4327 -1.9109 -6.0752 41 1 2.9536 -0.9907 -6.1656 42 1 1.8077 0.7764 -7.4736 43 1 0.2865 -0.1433 -7.3836 44 1 1.3622 -2.0370 -8.5700 45 1 2.8831 -1.1166 -8.6594 46 1 1.3352 -0.7105 -13.0811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385332514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:35 Heat of formation + Delta-G solvation = -73.802838 kcal Electronic energy + Delta-G solvation = -18600.582704 eV Core-core repulsion = 15907.882501 eV Total energy + Delta-G solvation = -2692.700203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16343 -37.70836 -35.89757 -34.30386 -33.49973 -32.16907 -30.08078 -27.57838 -26.40212 -24.88674 -22.76840 -22.41703 -21.87282 -21.45084 -20.55292 -18.85704 -17.02581 -16.42105 -16.16599 -15.92550 -15.70834 -15.36589 -15.05792 -14.87124 -14.70694 -14.25887 -14.03906 -13.71704 -13.43315 -13.27416 -12.90459 -12.80020 -12.70885 -12.55512 -12.33297 -12.26699 -12.09682 -11.78293 -11.74699 -11.69543 -11.38672 -11.33874 -11.27170 -11.22509 -10.83561 -10.76544 -10.69304 -9.28516 -8.29965 -6.34143 1.35674 1.38049 1.50790 2.36584 3.05343 3.19832 3.74703 3.85212 3.94487 4.08166 4.16062 4.24516 4.30267 4.47120 4.50096 4.55792 4.59018 4.63236 4.64853 4.71960 4.74218 4.80971 4.88853 4.90900 4.94255 4.98404 5.08766 5.13942 5.20575 5.21388 5.24592 5.26675 5.33799 5.37273 5.42188 5.50069 5.57159 5.59119 5.65430 5.68269 5.68521 6.11700 6.29122 6.51129 6.74153 7.30685 8.87100 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.002899 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.476218 B = 9655.881363 C =10083.753283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.104 4.104 8 C -0.071 4.071 9 H 0.067 0.933 10 C 0.062 3.938 11 N -0.692 5.692 12 C 0.069 3.931 13 C -0.105 4.105 14 C -0.095 4.095 15 C -0.012 4.012 16 C -0.536 4.536 17 H 0.029 0.971 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.246 1.246 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.343 0.657 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -3.020 30.644 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.142 4.142 8 C -0.090 4.090 9 H 0.085 0.915 10 C -0.067 4.067 11 N -0.323 5.323 12 C -0.061 4.061 13 C -0.143 4.143 14 C -0.134 4.134 15 C -0.050 4.050 16 C -0.574 4.574 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.170 1.170 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.621 -2.737 30.441 30.777 hybrid contribution -0.824 -0.384 -0.870 1.259 sum 2.797 -3.121 29.570 29.866 Atomic orbital electron populations 1.21904 0.95118 1.01878 1.01813 1.21105 0.95498 0.99390 0.94299 0.91582 1.21560 0.95460 1.00589 0.97156 1.21539 0.95692 1.00644 0.97764 1.21550 1.00194 0.99324 0.94631 1.21429 0.94671 1.00256 0.97818 1.21105 0.95842 0.99140 0.92906 0.91477 1.22103 0.97734 0.97516 0.89359 1.60450 1.64363 1.06072 1.01386 1.21838 0.97021 0.98016 0.89192 1.21482 1.01254 0.98889 0.92713 1.21292 0.99639 0.98647 0.93783 1.19541 0.96262 0.95874 0.93279 1.21577 1.35000 1.08913 0.91872 0.95268 1.26097 0.96680 1.01688 0.95186 1.70081 1.48638 1.42106 0.98619 0.85585 0.79483 0.78949 0.78187 1.19011 1.20909 1.16979 0.92704 0.92103 0.92896 0.91399 0.92047 0.92262 0.91489 0.92107 0.92194 0.92071 0.93046 0.91942 0.94727 0.83888 0.91711 0.95404 0.91899 0.91858 0.93610 0.93565 0.96362 0.96348 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.85 71.98 0.64 -1.31 16 2 C -0.08 -1.15 2.25 -10.79 -0.02 -1.17 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.33 5.20 30.60 0.16 -1.17 16 5 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 6 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 7 C -0.10 -1.77 5.09 30.58 0.16 -1.62 16 8 C -0.07 -1.14 1.86 -10.80 -0.02 -1.16 16 9 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 10 C 0.06 1.17 4.86 86.31 0.42 1.59 16 11 N -0.69 -15.32 5.95 -513.87 -3.06 -18.38 16 12 C 0.07 1.79 5.68 86.30 0.49 2.28 16 13 C -0.11 -3.25 5.47 30.59 0.17 -3.09 16 14 C -0.10 -3.80 5.15 30.59 0.16 -3.64 16 15 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 16 C -0.54 -32.03 9.66 25.60 0.25 -31.78 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 18 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 19 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 20 Si 0.96 45.33 27.47 68.60 1.88 47.21 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.75 6.32 -2.39 -0.02 0.73 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.03 0.65 6.17 -2.39 -0.01 0.63 16 37 H 0.34 6.98 8.73 -89.70 -0.78 6.20 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 45 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 46 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -65.13 350.17 2.51 -62.62 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.05 Total: 13.46 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.34 Total: -43.88 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.76 Total: -79.41 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -65.13 2.51 -62.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385332514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -65.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds