Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46923 * 2 1 4 4 C 1.52996 * 109.47203 * 240.00221 * 2 1 3 5 5 C 1.53005 * 109.46773 * 299.99914 * 4 2 1 6 6 C 1.52999 * 109.47119 * 299.99779 * 5 4 2 7 7 C 1.52996 * 109.47117 * 60.00432 * 6 5 4 8 8 C 1.53001 * 109.46848 * 119.99852 * 2 1 3 9 9 H 1.09004 * 109.46775 * 179.97438 * 8 2 1 10 10 N 1.46890 * 109.47508 * 299.99804 * 8 2 1 11 11 C 1.46905 * 111.00272 * 173.45339 * 10 8 2 12 12 C 1.46899 * 111.00308 * 297.41302 * 10 8 2 13 13 C 1.53005 * 109.47312 * 170.00014 * 12 10 8 14 14 C 1.52998 * 109.47108 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47070 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47312 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99681 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00170 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00086 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47051 * 90.00204 * 20 18 16 22 22 H 1.48497 * 109.47538 * 210.00311 * 20 18 16 23 23 H 1.48506 * 109.47128 * 330.00312 * 20 18 16 24 24 H 1.09003 * 109.46977 * 303.15223 * 1 2 3 25 25 H 1.08996 * 109.47102 * 63.15235 * 1 2 3 26 26 H 1.09001 * 109.46826 * 183.15309 * 1 2 3 27 27 H 1.08996 * 109.47014 * 59.99691 * 4 2 1 28 28 H 1.08995 * 109.47458 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47366 * 60.00411 * 5 4 2 30 30 H 1.09009 * 109.46721 * 179.97438 * 5 4 2 31 31 H 1.08999 * 109.47156 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47260 * 300.00069 * 6 5 4 33 33 H 1.09000 * 109.47495 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47352 * 59.99693 * 7 6 5 35 35 H 1.08999 * 109.47312 * 177.02375 * 11 10 8 36 36 H 1.08999 * 109.46909 * 297.02150 * 11 10 8 37 37 H 1.09002 * 109.46563 * 57.01874 * 11 10 8 38 38 H 1.08991 * 109.47460 * 49.99635 * 12 10 8 39 39 H 1.09006 * 109.46925 * 289.99349 * 12 10 8 40 40 H 1.09001 * 109.46578 * 300.00041 * 13 12 10 41 41 H 1.09000 * 109.46915 * 59.99400 * 13 12 10 42 42 H 1.08993 * 109.47295 * 300.00120 * 14 13 12 43 43 H 1.09005 * 109.47070 * 59.99748 * 14 13 12 44 44 H 1.09006 * 109.47210 * 300.00013 * 15 14 13 45 45 H 1.08996 * 109.47548 * 60.00030 * 15 14 13 46 46 H 0.97006 * 120.00120 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2492 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7216 1.2490 10 7 1.5504 -0.0288 2.4487 11 6 1.8895 -0.7792 3.6652 12 6 2.0713 1.3432 2.5140 13 6 1.3526 2.1092 3.6266 14 6 1.8957 3.5379 3.6951 15 6 1.1765 4.3040 4.8071 16 6 1.7110 5.7115 4.8742 17 1 2.4863 6.0278 4.1921 18 6 1.2101 6.5954 5.8063 19 7 0.2663 6.2102 6.6372 20 14 1.8730 8.3398 5.8899 21 1 1.0744 9.2163 4.9958 22 1 1.7788 8.8389 7.2853 23 1 3.2929 8.3512 5.4549 24 1 -0.3633 0.5620 0.8604 25 1 -0.3633 0.4641 -0.9169 26 1 -0.3633 -1.0261 0.0565 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2490 29 1 0.4400 -2.1638 -1.2493 30 1 1.8930 -2.6774 -2.1395 31 1 1.6771 -3.9127 -0.0002 32 1 3.1301 -2.8850 0.0000 33 1 1.8938 -2.6773 2.1392 34 1 0.4400 -2.1638 1.2493 35 1 1.5622 -0.2188 4.5409 36 1 1.3896 -1.7476 3.6459 37 1 2.9683 -0.9281 3.7113 38 1 1.9007 1.8425 1.5604 39 1 3.1406 1.3162 2.7238 40 1 0.2833 2.1361 3.4168 41 1 1.5233 1.6098 4.5803 42 1 2.9648 3.5106 3.9049 43 1 1.7253 4.0375 2.7413 44 1 0.1073 4.3314 4.5968 45 1 1.3465 3.8047 5.7610 46 1 -0.0864 6.8322 7.2927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395326194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = -37.118354 kcal Electronic energy + Delta-G solvation = -19396.363109 eV Core-core repulsion = 16705.253665 eV Total energy + Delta-G solvation = -2691.109444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90198 -36.57737 -34.19112 -32.27149 -32.08330 -29.97660 -28.31779 -26.84006 -25.86471 -23.98164 -22.25213 -21.69450 -20.44290 -19.95435 -18.51435 -16.50527 -16.12618 -15.50040 -14.86490 -14.75151 -14.53193 -14.36529 -13.86247 -13.54528 -13.18859 -12.92338 -12.58745 -12.46698 -12.15910 -11.87068 -11.74638 -11.56317 -11.34147 -11.31387 -11.25561 -11.01438 -10.92819 -10.55500 -10.46048 -10.39326 -10.29866 -10.16710 -9.85782 -9.54613 -9.20883 -8.96061 -8.29722 -8.14608 -5.94794 -3.96852 3.34671 3.40578 3.44147 3.95367 4.49944 4.52105 4.57428 4.80051 5.05502 5.12107 5.20287 5.25974 5.29158 5.34563 5.40631 5.46017 5.48087 5.55748 5.63371 5.67006 5.77110 5.83762 5.86810 5.92758 5.93338 5.98123 6.01310 6.05367 6.20170 6.21538 6.24796 6.32812 6.35049 6.54452 6.60400 6.88086 7.03866 7.16511 7.25398 7.34293 7.74788 7.91317 8.06744 8.49713 9.10746 9.66811 11.16560 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042330 B = 0.003445 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.314234 B = 8124.699571 C = 8418.456475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.117 4.117 8 C 0.091 3.909 9 H 0.034 0.966 10 N -0.535 5.535 11 C 0.019 3.981 12 C 0.053 3.947 13 C -0.112 4.112 14 C -0.109 4.109 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -18.579 -13.967 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.018 4.018 9 H 0.052 0.948 10 N -0.259 5.259 11 C -0.129 4.129 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.015 4.015 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.213 -18.491 -13.842 23.204 hybrid contribution 1.284 0.991 0.242 1.640 sum 3.497 -17.500 -13.600 22.437 Atomic orbital electron populations 1.21790 0.94414 1.01859 1.01581 1.21154 0.97109 0.99026 0.93185 0.91080 1.21572 1.00270 0.95659 0.97705 1.21572 1.01205 0.95635 0.97410 1.21512 1.00519 0.98716 0.94763 1.21701 1.01961 0.94348 0.97431 1.21604 0.96240 0.93556 0.90362 0.94782 1.62048 1.59741 1.02489 1.01607 1.22469 0.98171 0.98811 0.93422 1.22293 0.96452 0.88128 1.00579 1.21664 1.00309 0.96225 0.96828 1.21594 0.99401 0.93130 1.00602 1.19082 0.95555 0.94123 0.92772 1.21300 1.20740 0.96788 1.16945 0.92807 1.25032 0.95162 0.98635 0.95717 1.69972 1.27804 1.35389 1.20421 0.86618 0.79355 0.85004 0.77164 1.20681 1.21256 1.19926 0.91294 0.93755 0.92608 0.91895 0.92373 0.91529 0.92453 0.92087 0.92366 0.92043 0.90675 0.90725 0.91566 0.96183 0.90767 0.95477 0.91777 0.92641 0.93805 0.93550 0.96632 0.96786 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.29 37.16 0.31 -1.21 16 2 C -0.09 -0.92 2.45 -90.62 -0.22 -1.14 16 3 H 0.07 0.84 6.26 -51.93 -0.33 0.51 16 4 C -0.11 -1.02 5.45 -26.73 -0.15 -1.17 16 5 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -1.12 4.48 -26.73 -0.12 -1.24 16 8 C 0.09 1.02 1.64 -67.72 -0.11 0.91 16 9 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 10 N -0.54 -7.00 3.92 -234.88 -0.92 -7.92 16 11 C 0.02 0.24 8.78 60.07 0.53 0.76 16 12 C 0.05 0.78 4.80 -3.82 -0.02 0.76 16 13 C -0.11 -1.99 5.15 -26.73 -0.14 -2.12 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.57 4.82 -51.93 -0.25 0.32 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.54 6.50 -51.93 -0.34 0.21 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 34 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 35 H 0.07 0.98 6.19 -51.93 -0.32 0.66 16 36 H 0.07 0.71 6.39 -51.93 -0.33 0.38 16 37 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 1.08 5.93 -51.93 -0.31 0.78 16 39 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.98 6.42 -51.93 -0.33 0.65 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -29.96 338.35 -9.75 -39.71 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -8.73 Total: -4.51 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -0.92 Total: -22.61 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.19 Total: -34.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.96 -9.75 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.595 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds