Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46923 * 2 1 4 4 C 1.52996 * 109.47203 * 240.00221 * 2 1 3 5 5 C 1.53005 * 109.46773 * 299.99914 * 4 2 1 6 6 C 1.52999 * 109.47119 * 299.99779 * 5 4 2 7 7 C 1.52996 * 109.47117 * 60.00432 * 6 5 4 8 8 C 1.53001 * 109.46848 * 119.99852 * 2 1 3 9 9 H 1.09004 * 109.46775 * 179.97438 * 8 2 1 10 10 N 1.46890 * 109.47508 * 299.99804 * 8 2 1 11 11 C 1.46905 * 111.00272 * 173.45339 * 10 8 2 12 12 C 1.46899 * 111.00308 * 297.41302 * 10 8 2 13 13 C 1.53005 * 109.47312 * 170.00014 * 12 10 8 14 14 C 1.52998 * 109.47108 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47070 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47312 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99681 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00170 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00086 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47051 * 90.00204 * 20 18 16 22 22 H 1.48497 * 109.47538 * 210.00311 * 20 18 16 23 23 H 1.48506 * 109.47128 * 330.00312 * 20 18 16 24 24 H 1.09003 * 109.46977 * 303.15223 * 1 2 3 25 25 H 1.08996 * 109.47102 * 63.15235 * 1 2 3 26 26 H 1.09001 * 109.46826 * 183.15309 * 1 2 3 27 27 H 1.08996 * 109.47014 * 59.99691 * 4 2 1 28 28 H 1.08995 * 109.47458 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47366 * 60.00411 * 5 4 2 30 30 H 1.09009 * 109.46721 * 179.97438 * 5 4 2 31 31 H 1.08999 * 109.47156 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47260 * 300.00069 * 6 5 4 33 33 H 1.09000 * 109.47495 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47352 * 59.99693 * 7 6 5 35 35 H 1.08999 * 109.47312 * 177.02375 * 11 10 8 36 36 H 1.08999 * 109.46909 * 297.02150 * 11 10 8 37 37 H 1.09002 * 109.46563 * 57.01874 * 11 10 8 38 38 H 1.08991 * 109.47460 * 49.99635 * 12 10 8 39 39 H 1.09006 * 109.46925 * 289.99349 * 12 10 8 40 40 H 1.09001 * 109.46578 * 300.00041 * 13 12 10 41 41 H 1.09000 * 109.46915 * 59.99400 * 13 12 10 42 42 H 1.08993 * 109.47295 * 300.00120 * 14 13 12 43 43 H 1.09005 * 109.47070 * 59.99748 * 14 13 12 44 44 H 1.09006 * 109.47210 * 300.00013 * 15 14 13 45 45 H 1.08996 * 109.47548 * 60.00030 * 15 14 13 46 46 H 0.97006 * 120.00120 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2492 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7216 1.2490 10 7 1.5504 -0.0288 2.4487 11 6 1.8895 -0.7792 3.6652 12 6 2.0713 1.3432 2.5140 13 6 1.3526 2.1092 3.6266 14 6 1.8957 3.5379 3.6951 15 6 1.1765 4.3040 4.8071 16 6 1.7110 5.7115 4.8742 17 1 2.4863 6.0278 4.1921 18 6 1.2101 6.5954 5.8063 19 7 0.2663 6.2102 6.6372 20 14 1.8730 8.3398 5.8899 21 1 1.0744 9.2163 4.9958 22 1 1.7788 8.8389 7.2853 23 1 3.2929 8.3512 5.4549 24 1 -0.3633 0.5620 0.8604 25 1 -0.3633 0.4641 -0.9169 26 1 -0.3633 -1.0261 0.0565 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2490 29 1 0.4400 -2.1638 -1.2493 30 1 1.8930 -2.6774 -2.1395 31 1 1.6771 -3.9127 -0.0002 32 1 3.1301 -2.8850 0.0000 33 1 1.8938 -2.6773 2.1392 34 1 0.4400 -2.1638 1.2493 35 1 1.5622 -0.2188 4.5409 36 1 1.3896 -1.7476 3.6459 37 1 2.9683 -0.9281 3.7113 38 1 1.9007 1.8425 1.5604 39 1 3.1406 1.3162 2.7238 40 1 0.2833 2.1361 3.4168 41 1 1.5233 1.6098 4.5803 42 1 2.9648 3.5106 3.9049 43 1 1.7253 4.0375 2.7413 44 1 0.1073 4.3314 4.5968 45 1 1.3465 3.8047 5.7610 46 1 -0.0864 6.8322 7.2927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395326194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = -52.651548 kcal Electronic energy + Delta-G solvation = -19397.036679 eV Core-core repulsion = 16705.253665 eV Total energy + Delta-G solvation = -2691.783014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77838 -37.71099 -35.96271 -34.13181 -32.91446 -31.16502 -29.72948 -27.81009 -27.21103 -25.51667 -23.31585 -22.74974 -21.77967 -21.43885 -19.34431 -18.43708 -17.38459 -16.55549 -16.54762 -15.87088 -15.80247 -15.55829 -14.71962 -14.64921 -14.38406 -14.19812 -13.75430 -13.70218 -13.55462 -13.33060 -13.09117 -12.82627 -12.58005 -12.47219 -12.31858 -12.23556 -12.20406 -12.01644 -11.89959 -11.84218 -11.35770 -11.27705 -11.22862 -10.98358 -10.89218 -10.67342 -10.55789 -9.19538 -8.20141 -6.31833 1.38988 1.40943 1.52045 2.40575 2.94077 3.12391 3.71431 3.82085 4.02373 4.09541 4.18592 4.30215 4.36228 4.40672 4.49010 4.52552 4.55205 4.56049 4.63187 4.67726 4.71826 4.82271 4.86730 4.89549 5.00651 5.08067 5.09760 5.12559 5.18716 5.23506 5.26994 5.28556 5.30456 5.36478 5.44148 5.47351 5.50701 5.54846 5.70693 5.77190 5.86334 6.17589 6.24231 6.28277 6.85522 7.37464 8.91801 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042330 B = 0.003445 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.314234 B = 8124.699571 C = 8418.456475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.113 4.113 8 C 0.091 3.909 9 H 0.030 0.970 10 N -0.542 5.542 11 C 0.020 3.980 12 C 0.064 3.936 13 C -0.101 4.101 14 C -0.096 4.096 15 C 0.025 3.975 16 C -0.545 4.545 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.050 0.950 44 H -0.011 1.011 45 H -0.012 1.012 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -19.130 -15.355 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.075 0.925 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.017 4.017 9 H 0.048 0.952 10 N -0.266 5.266 11 C -0.128 4.128 12 C -0.063 4.063 13 C -0.139 4.139 14 C -0.134 4.134 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.187 1.187 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.166 -19.058 -15.244 24.609 hybrid contribution 0.953 1.131 0.694 1.634 sum 4.119 -17.926 -14.550 23.452 Atomic orbital electron populations 1.21732 0.94581 1.02011 1.00819 1.21158 0.96907 0.98529 0.93970 0.92463 1.21549 1.00343 0.96212 0.96787 1.21569 1.01174 0.94946 0.97939 1.21501 1.00600 0.99190 0.93891 1.21674 1.01600 0.93231 0.98538 1.21677 0.95974 0.94490 0.89557 0.95229 1.62021 1.59956 1.01871 1.02758 1.22483 0.98601 0.99227 0.92513 1.22054 0.95883 0.89132 0.99260 1.21478 0.99827 0.94513 0.98048 1.21399 0.98950 0.94575 0.98523 1.19000 0.94516 0.94225 0.93492 1.21743 1.21161 0.98052 1.17379 0.92243 1.26026 0.95272 1.03627 0.95105 1.70109 1.29031 1.37247 1.21083 0.85426 0.79136 0.78879 0.77481 1.19653 1.20629 1.18701 0.93625 0.93106 0.91783 0.91325 0.92215 0.91566 0.91080 0.90765 0.92209 0.91761 0.91151 0.92102 0.89880 0.95765 0.90485 0.95448 0.92769 0.92959 0.93397 0.93137 0.99272 0.99314 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.29 71.98 0.60 -2.20 16 2 C -0.09 -1.76 2.45 -10.79 -0.03 -1.79 16 3 H 0.06 1.31 6.26 -2.39 -0.01 1.30 16 4 C -0.11 -1.77 5.45 30.59 0.17 -1.60 16 5 C -0.12 -1.61 5.65 30.60 0.17 -1.43 16 6 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 7 C -0.11 -1.96 4.48 30.59 0.14 -1.82 16 8 C 0.09 1.93 1.64 44.92 0.07 2.00 16 9 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 10 N -0.54 -13.85 3.92 -897.04 -3.52 -17.37 16 11 C 0.02 0.46 8.78 127.69 1.12 1.59 16 12 C 0.06 1.89 4.80 86.31 0.41 2.30 16 13 C -0.10 -3.62 5.15 30.60 0.16 -3.46 16 14 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 15 C 0.02 1.37 4.97 29.85 0.15 1.52 16 16 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 19 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 20 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H 0.04 1.16 7.70 -2.39 -0.02 1.14 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.21 4.82 -2.39 -0.01 1.20 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.91 6.50 -2.39 -0.02 0.90 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 1.08 6.39 -2.39 -0.02 1.06 16 34 H 0.07 1.30 6.36 -2.38 -0.02 1.29 16 35 H 0.06 1.60 6.19 -2.39 -0.01 1.58 16 36 H 0.08 1.67 6.39 -2.39 -0.02 1.65 16 37 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 2.22 5.93 -2.39 -0.01 2.21 16 39 H 0.03 0.80 8.12 -2.38 -0.02 0.78 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.90 6.42 -2.39 -0.02 1.88 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 44 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 45 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 46 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -64.36 338.35 3.69 -60.67 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.91 Total: 9.55 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.00 Total: -41.94 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -3.24 Total: -75.53 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.36 3.69 -60.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.021 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds