Wall clock time and date at job start Mon Mar 30 2020 06:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 9 9 H 1.09001 * 109.47066 * 60.00169 * 8 2 1 10 10 N 1.46896 * 109.47500 * 300.00262 * 8 2 1 11 11 C 1.46907 * 110.99655 * 298.95350 * 10 8 2 12 12 C 1.46899 * 111.00805 * 175.00006 * 10 8 2 13 13 C 1.52993 * 109.47244 * 190.00178 * 12 10 8 14 14 C 1.53001 * 109.47017 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47198 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00118 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00338 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47310 * 89.99965 * 20 18 16 22 22 H 1.48503 * 109.47325 * 210.00161 * 20 18 16 23 23 H 1.48506 * 109.47143 * 329.99714 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 31 31 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 33 33 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 34 34 H 1.09004 * 109.46785 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47048 * 59.99933 * 11 10 8 36 36 H 1.09001 * 109.46777 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.47091 * 299.99367 * 11 10 8 38 38 H 1.09003 * 109.46446 * 309.99558 * 12 10 8 39 39 H 1.08997 * 109.47139 * 69.99371 * 12 10 8 40 40 H 1.08994 * 109.47132 * 299.99082 * 13 12 10 41 41 H 1.09002 * 109.47698 * 60.00034 * 13 12 10 42 42 H 1.09003 * 109.47323 * 299.99855 * 14 13 12 43 43 H 1.09004 * 109.47402 * 59.99920 * 14 13 12 44 44 H 1.09003 * 109.47019 * 300.00318 * 15 14 13 45 45 H 1.08995 * 109.46805 * 60.00037 * 15 14 13 46 46 H 0.96997 * 120.00325 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7212 1.2491 9 1 1.6768 -1.7489 1.2491 10 7 1.5504 -0.0289 2.4486 11 6 2.0418 1.3548 2.4952 12 6 1.9214 -0.7605 3.6673 13 6 1.1912 -0.1552 4.8677 14 6 1.5772 -0.9176 6.1369 15 6 0.8475 -0.3120 7.3375 16 6 1.2282 -1.0625 8.5877 17 1 1.9216 -1.8887 8.5315 18 6 0.6921 -0.6940 9.8033 19 7 1.0246 -1.3486 10.8943 20 14 -0.5067 0.7354 9.9005 21 1 -1.8924 0.2322 9.7227 22 1 -0.3855 1.3938 11.2261 23 1 -0.1951 1.7165 8.8302 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6767 -1.7489 -1.2494 28 1 1.6767 -0.2073 -2.1392 29 1 3.9330 0.3072 -1.2498 30 1 3.9333 -1.2348 -2.1395 31 1 5.1706 -1.4408 -0.0005 32 1 3.7176 -2.4693 -0.0002 33 1 3.9335 0.3075 1.2487 34 1 3.9339 -1.2342 2.1388 35 1 1.6938 1.8937 1.6140 36 1 1.6641 1.8444 3.3928 37 1 3.1316 1.3529 2.5132 38 1 1.6403 -1.8083 3.5616 39 1 2.9979 -0.6869 3.8217 40 1 1.4723 0.8926 4.9734 41 1 0.1147 -0.2289 4.7133 42 1 1.2959 -1.9654 6.0310 43 1 2.6537 -0.8443 6.2916 44 1 1.1292 0.7357 7.4432 45 1 -0.2290 -0.3850 7.1830 46 1 0.6472 -1.0896 11.7495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395326198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:08 Heat of formation + Delta-G solvation = -38.166698 kcal Electronic energy + Delta-G solvation = -19346.625385 eV Core-core repulsion = 16655.470481 eV Total energy + Delta-G solvation = -2691.154904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93452 -36.51584 -34.28226 -32.78111 -32.14946 -29.98215 -28.64692 -26.84238 -25.83426 -24.14284 -22.28344 -21.24281 -20.42901 -19.97887 -19.42412 -16.65044 -16.04200 -15.34179 -15.13737 -14.78533 -14.49003 -14.29599 -14.09404 -13.73199 -13.15518 -12.99410 -12.65065 -12.51155 -12.21762 -11.97380 -11.83855 -11.83028 -11.64506 -11.53459 -11.25350 -11.08786 -10.92101 -10.72383 -10.55518 -10.52673 -10.36830 -10.15388 -9.83608 -9.60886 -9.41368 -9.10629 -8.49148 -8.14277 -5.99929 -3.97303 3.34481 3.41317 3.46111 3.93762 4.43500 4.49723 4.53794 4.73185 4.88783 4.95776 5.17552 5.22244 5.25776 5.26733 5.34330 5.35169 5.41512 5.51364 5.53378 5.59423 5.64608 5.75867 5.80427 5.84384 5.88950 5.91040 5.97457 6.00889 6.03572 6.08192 6.15401 6.19612 6.30137 6.35898 6.45650 6.72173 6.83148 6.97494 7.17052 7.23089 7.39383 7.52265 7.85727 8.59713 9.05510 9.63261 11.13774 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040908 B = 0.003566 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.294589 B = 7850.061740 C = 8216.176391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.155 4.155 8 C 0.090 3.910 9 H 0.080 0.920 10 N -0.533 5.533 11 C 0.015 3.985 12 C 0.055 3.945 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.013 4.013 16 C -0.519 4.519 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.013 0.987 45 H 0.011 0.989 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 3.270 -25.802 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.194 4.194 8 C -0.019 4.019 9 H 0.098 0.902 10 N -0.255 5.255 11 C -0.133 4.133 12 C -0.072 4.072 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.088 0.912 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.603 3.283 -25.620 25.960 hybrid contribution 0.344 0.652 0.328 0.807 sum 2.946 3.935 -25.292 25.765 Atomic orbital electron populations 1.21712 0.94514 1.01757 1.01625 1.21165 0.96351 0.99289 0.93385 0.91331 1.21603 0.95231 1.00833 0.97522 1.21547 0.95907 1.00598 0.97682 1.21464 1.00013 0.99409 0.94396 1.22262 0.97736 1.01117 0.98316 1.21776 0.91864 0.98234 0.89997 0.90223 1.62258 1.59002 1.02314 1.01934 1.22501 0.97809 0.90381 1.02598 1.22215 0.97734 0.97942 0.89328 1.21700 1.00465 0.99570 0.93655 1.21423 1.00057 0.98946 0.93526 1.19562 0.95343 0.96288 0.93886 1.21203 1.27349 1.16680 0.90479 0.91160 1.25051 0.96404 0.96489 0.95717 1.69922 1.44757 1.41158 0.98745 0.86756 0.81763 0.83360 0.77278 1.20307 1.21482 1.19005 0.91230 0.93088 0.93723 0.91944 0.92023 0.92222 0.92216 0.92278 0.91996 0.91707 0.91717 0.91662 0.91009 0.95520 0.91138 0.94907 0.92625 0.91785 0.92929 0.93163 0.96831 0.97103 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.04 37.16 0.34 -0.97 16 2 C -0.08 -0.76 1.90 -90.62 -0.17 -0.93 16 3 H 0.07 0.64 6.42 -51.93 -0.33 0.31 16 4 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 6 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.16 -1.53 4.51 -26.70 -0.12 -1.65 16 8 C 0.09 0.94 1.67 -67.69 -0.11 0.83 16 9 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 10 N -0.53 -6.50 3.99 -234.86 -0.94 -7.44 16 11 C 0.02 0.17 8.62 60.07 0.52 0.69 16 12 C 0.06 0.77 4.40 -3.83 -0.02 0.75 16 13 C -0.12 -1.91 5.15 -26.73 -0.14 -2.05 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 15 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 16 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 17 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 20 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 6.39 -51.93 -0.33 0.32 16 34 H 0.06 0.70 6.75 -51.93 -0.35 0.35 16 35 H 0.06 0.66 6.33 -51.93 -0.33 0.33 16 36 H 0.07 0.87 6.30 -51.93 -0.33 0.55 16 37 H 0.03 0.30 6.28 -51.93 -0.33 -0.03 16 38 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 39 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 40 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -30.30 338.97 -9.49 -39.79 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -8.92 Total: -4.34 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -0.84 Total: -22.92 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.16 Total: -35.25 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.30 -9.49 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.627 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds