Wall clock time and date at job start Mon Mar 30 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 9 9 H 1.09001 * 109.47066 * 60.00169 * 8 2 1 10 10 N 1.46896 * 109.47500 * 300.00262 * 8 2 1 11 11 C 1.46907 * 110.99655 * 298.95350 * 10 8 2 12 12 C 1.46899 * 111.00805 * 175.00006 * 10 8 2 13 13 C 1.52993 * 109.47244 * 190.00178 * 12 10 8 14 14 C 1.53001 * 109.47017 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47198 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00118 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00338 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47310 * 89.99965 * 20 18 16 22 22 H 1.48503 * 109.47325 * 210.00161 * 20 18 16 23 23 H 1.48506 * 109.47143 * 329.99714 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 31 31 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 33 33 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 34 34 H 1.09004 * 109.46785 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47048 * 59.99933 * 11 10 8 36 36 H 1.09001 * 109.46777 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.47091 * 299.99367 * 11 10 8 38 38 H 1.09003 * 109.46446 * 309.99558 * 12 10 8 39 39 H 1.08997 * 109.47139 * 69.99371 * 12 10 8 40 40 H 1.08994 * 109.47132 * 299.99082 * 13 12 10 41 41 H 1.09002 * 109.47698 * 60.00034 * 13 12 10 42 42 H 1.09003 * 109.47323 * 299.99855 * 14 13 12 43 43 H 1.09004 * 109.47402 * 59.99920 * 14 13 12 44 44 H 1.09003 * 109.47019 * 300.00318 * 15 14 13 45 45 H 1.08995 * 109.46805 * 60.00037 * 15 14 13 46 46 H 0.96997 * 120.00325 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7212 1.2491 9 1 1.6768 -1.7489 1.2491 10 7 1.5504 -0.0289 2.4486 11 6 2.0418 1.3548 2.4952 12 6 1.9214 -0.7605 3.6673 13 6 1.1912 -0.1552 4.8677 14 6 1.5772 -0.9176 6.1369 15 6 0.8475 -0.3120 7.3375 16 6 1.2282 -1.0625 8.5877 17 1 1.9216 -1.8887 8.5315 18 6 0.6921 -0.6940 9.8033 19 7 1.0246 -1.3486 10.8943 20 14 -0.5067 0.7354 9.9005 21 1 -1.8924 0.2322 9.7227 22 1 -0.3855 1.3938 11.2261 23 1 -0.1951 1.7165 8.8302 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6767 -1.7489 -1.2494 28 1 1.6767 -0.2073 -2.1392 29 1 3.9330 0.3072 -1.2498 30 1 3.9333 -1.2348 -2.1395 31 1 5.1706 -1.4408 -0.0005 32 1 3.7176 -2.4693 -0.0002 33 1 3.9335 0.3075 1.2487 34 1 3.9339 -1.2342 2.1388 35 1 1.6938 1.8937 1.6140 36 1 1.6641 1.8444 3.3928 37 1 3.1316 1.3529 2.5132 38 1 1.6403 -1.8083 3.5616 39 1 2.9979 -0.6869 3.8217 40 1 1.4723 0.8926 4.9734 41 1 0.1147 -0.2289 4.7133 42 1 1.2959 -1.9654 6.0310 43 1 2.6537 -0.8443 6.2916 44 1 1.1292 0.7357 7.4432 45 1 -0.2290 -0.3850 7.1830 46 1 0.6472 -1.0896 11.7495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395326198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:07 Heat of formation + Delta-G solvation = -54.586690 kcal Electronic energy + Delta-G solvation = -19347.337409 eV Core-core repulsion = 16655.470481 eV Total energy + Delta-G solvation = -2691.866928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75877 -37.58781 -35.90486 -34.21162 -33.43091 -31.24493 -29.86827 -27.81758 -26.97877 -25.43102 -23.47546 -22.12176 -21.67718 -21.42429 -20.21782 -18.86021 -16.98098 -16.51822 -16.39085 -16.01252 -15.50434 -15.31429 -15.20505 -14.85643 -14.61218 -14.11558 -13.98171 -13.62052 -13.54302 -13.17287 -13.01139 -12.86990 -12.69306 -12.61750 -12.49031 -12.23605 -11.97812 -11.89012 -11.75495 -11.68328 -11.37853 -11.35312 -11.27582 -11.21401 -11.15088 -10.78601 -10.76713 -9.09412 -8.30124 -6.34283 1.35672 1.37432 1.50118 2.36299 2.98423 3.05194 3.69748 3.83246 4.01747 4.04736 4.17099 4.22020 4.28631 4.40340 4.49297 4.53309 4.54735 4.56508 4.61104 4.64738 4.72968 4.80700 4.84746 4.88627 4.93367 5.07324 5.11084 5.12654 5.14824 5.20357 5.20496 5.22911 5.27858 5.32045 5.36722 5.41871 5.54863 5.58275 5.62717 5.64965 5.68428 6.18955 6.24849 6.29729 6.73931 7.30593 8.86983 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040908 B = 0.003566 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.294589 B = 7850.061740 C = 8216.176391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.151 4.151 8 C 0.091 3.909 9 H 0.072 0.928 10 N -0.538 5.538 11 C 0.016 3.984 12 C 0.064 3.936 13 C -0.103 4.103 14 C -0.094 4.094 15 C -0.011 4.011 16 C -0.535 4.535 17 H 0.029 0.971 18 C 0.001 3.999 19 N -0.954 5.954 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.247 1.247 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 4.837 -28.020 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.190 4.190 8 C -0.018 4.018 9 H 0.090 0.910 10 N -0.260 5.260 11 C -0.131 4.131 12 C -0.064 4.064 13 C -0.141 4.141 14 C -0.133 4.133 15 C -0.048 4.048 16 C -0.573 4.573 17 H 0.047 0.953 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.170 1.170 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.897 4.846 -27.865 28.347 hybrid contribution 0.628 0.077 1.032 1.210 sum 2.524 4.923 -26.833 27.398 Atomic orbital electron populations 1.21671 0.94684 1.01462 1.01463 1.21137 0.96116 0.99263 0.93217 0.91249 1.21583 0.95415 1.00732 0.97146 1.21532 0.95628 1.00698 0.97579 1.21460 1.00320 0.99275 0.94097 1.22206 0.97206 1.01055 0.98568 1.21808 0.92285 0.97849 0.89829 0.91009 1.62225 1.59385 1.02713 1.01722 1.22510 0.97930 0.89829 1.02879 1.22012 0.97205 0.97850 0.89342 1.21516 1.00593 0.99299 0.92692 1.21294 0.99166 0.98912 0.93893 1.19527 0.96055 0.95942 0.93310 1.21574 1.26641 1.16165 0.92951 0.95252 1.26080 0.98578 0.99787 0.95107 1.70076 1.46461 1.43318 0.99598 0.85598 0.79117 0.79577 0.77996 1.19071 1.20839 1.17000 0.92763 0.93451 0.92478 0.92019 0.90878 0.92064 0.91025 0.91805 0.92077 0.91801 0.93116 0.90268 0.91822 0.95315 0.91310 0.95059 0.92131 0.91869 0.93529 0.93755 0.96388 0.96464 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.04 71.98 0.65 -1.65 16 2 C -0.08 -1.27 1.90 -10.79 -0.02 -1.29 16 3 H 0.07 1.13 6.42 -2.39 -0.02 1.12 16 4 C -0.11 -1.46 5.20 30.60 0.16 -1.30 16 5 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 6 C -0.11 -1.70 5.92 30.60 0.18 -1.52 16 7 C -0.15 -2.78 4.51 30.61 0.14 -2.65 16 8 C 0.09 1.77 1.67 44.93 0.08 1.84 16 9 H 0.07 1.52 8.03 -2.39 -0.02 1.50 16 10 N -0.54 -12.42 3.99 -896.97 -3.57 -15.99 16 11 C 0.02 0.34 8.62 127.69 1.10 1.44 16 12 C 0.06 1.71 4.40 86.30 0.38 2.09 16 13 C -0.10 -3.27 5.15 30.59 0.16 -3.11 16 14 C -0.09 -3.80 5.15 30.60 0.16 -3.64 16 15 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 16 C -0.54 -32.10 9.66 25.60 0.25 -31.85 16 17 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 18 C 0.00 0.05 5.47 84.65 0.46 0.51 16 19 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 20 Si 0.95 45.47 27.47 68.60 1.88 47.36 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 24 H 0.05 1.09 7.60 -2.39 -0.02 1.07 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.19 6.39 -2.39 -0.02 1.17 16 34 H 0.05 1.07 6.75 -2.38 -0.02 1.05 16 35 H 0.08 1.44 6.33 -2.39 -0.02 1.42 16 36 H 0.06 1.44 6.30 -2.39 -0.02 1.43 16 37 H 0.03 0.59 6.28 -2.39 -0.01 0.57 16 38 H 0.07 1.87 8.00 -2.39 -0.02 1.85 16 39 H 0.03 0.85 6.94 -2.39 -0.02 0.84 16 40 H 0.06 1.87 6.47 -2.39 -0.02 1.86 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 44 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 45 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 46 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -65.38 338.97 3.44 -61.94 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.84 Total: 10.66 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 3.99 Total: -42.84 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.28 Total: -77.12 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -65.38 3.44 -61.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.349 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds