Wall clock time and date at job start Mon Mar 30 2020 07:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47026 * 2 1 4 4 C 1.53006 * 109.47110 * 240.00457 * 2 1 3 5 5 H 1.08999 * 115.54529 * 280.06719 * 4 2 1 6 6 C 1.52993 * 117.50089 * 134.40320 * 4 2 1 7 7 C 1.52992 * 117.49925 * 65.73995 * 4 2 1 8 8 C 1.53007 * 117.49723 * 214.97807 * 7 4 2 9 9 C 1.52993 * 117.50472 * 0.02562 * 7 4 2 10 10 N 1.46892 * 109.47209 * 120.00043 * 2 1 3 11 11 C 1.46903 * 111.00109 * 58.95403 * 10 2 1 12 12 C 1.46894 * 110.99952 * 294.99903 * 10 2 1 13 13 C 1.53005 * 109.47159 * 190.00057 * 12 10 2 14 14 C 1.53002 * 109.47117 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47117 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47049 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00365 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99821 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99864 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00133 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46989 * 90.00071 * 20 18 16 22 22 H 1.48501 * 109.47234 * 209.99814 * 20 18 16 23 23 H 1.48497 * 109.47136 * 330.00611 * 20 18 16 24 24 H 1.08995 * 109.47053 * 172.18966 * 1 2 3 25 25 H 1.09000 * 109.47250 * 292.19625 * 1 2 3 26 26 H 1.09000 * 109.47349 * 52.19432 * 1 2 3 27 27 H 1.08999 * 117.50305 * 359.97438 * 6 4 2 28 28 H 1.09000 * 117.50022 * 145.01912 * 6 4 2 29 29 H 1.09005 * 109.46658 * 60.00378 * 8 7 4 30 30 H 1.09001 * 109.47250 * 179.97438 * 8 7 4 31 31 H 1.08995 * 109.46960 * 300.00553 * 8 7 4 32 32 H 1.09001 * 109.47106 * 50.56216 * 9 7 4 33 33 H 1.08997 * 109.47851 * 170.56386 * 9 7 4 34 34 H 1.09005 * 109.47319 * 290.56410 * 9 7 4 35 35 H 1.09001 * 109.47046 * 60.00129 * 11 10 2 36 36 H 1.08992 * 109.46883 * 179.97438 * 11 10 2 37 37 H 1.09001 * 109.46830 * 300.00265 * 11 10 2 38 38 H 1.09003 * 109.47376 * 309.99839 * 12 10 2 39 39 H 1.08999 * 109.47262 * 70.00591 * 12 10 2 40 40 H 1.09003 * 109.46798 * 300.00135 * 13 12 10 41 41 H 1.08997 * 109.47318 * 60.00289 * 13 12 10 42 42 H 1.09003 * 109.47191 * 299.99642 * 14 13 12 43 43 H 1.08997 * 109.46996 * 59.99840 * 14 13 12 44 44 H 1.09003 * 109.46798 * 299.99883 * 15 14 13 45 45 H 1.09004 * 109.47033 * 59.99819 * 15 14 13 46 46 H 0.97000 * 119.99731 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 2.0346 -1.8100 -1.1987 6 6 3.1707 -0.0563 -2.0368 7 6 1.7498 -0.0755 -2.6057 8 6 1.4747 -1.0077 -3.7874 9 6 0.9723 1.2421 -2.6091 10 7 2.0196 -0.6925 1.1994 11 6 1.5283 -2.0761 1.2459 12 6 1.6487 0.0392 2.4179 13 6 2.3789 -0.5662 3.6185 14 6 1.9921 0.1954 4.8878 15 6 2.7228 -0.4095 6.0883 16 6 2.3413 0.3402 7.3385 17 1 1.6474 1.1659 7.2826 18 6 2.8789 -0.0273 8.5539 19 7 2.5464 0.6274 9.6449 20 14 4.0796 -1.4550 8.6507 21 1 5.4646 -0.9500 8.4715 22 1 3.9604 -2.1131 9.9765 23 1 3.7686 -2.4368 7.5808 24 1 -0.3633 -1.0181 -0.1396 25 1 -0.3634 0.3882 0.9515 26 1 -0.3634 0.6299 -0.8119 27 1 3.5511 0.8952 -1.6651 28 1 3.9090 -0.7076 -2.5046 29 1 0.6022 -1.6235 -3.5689 30 1 1.2853 -0.4143 -4.6819 31 1 2.3401 -1.6494 -3.9530 32 1 1.4370 1.9399 -1.9124 33 1 0.9839 1.6683 -3.6122 34 1 -0.0579 1.0569 -2.3049 35 1 1.8763 -2.6150 0.3647 36 1 1.9060 -2.5657 2.1434 37 1 0.4385 -2.0742 1.2638 38 1 1.9298 1.0870 2.3124 39 1 0.5723 -0.0346 2.5725 40 1 2.0979 -1.6141 3.7240 41 1 3.4554 -0.4925 3.4640 42 1 2.2728 1.2434 4.7825 43 1 0.9156 0.1214 5.0421 44 1 2.4425 -1.4576 6.1938 45 1 3.7993 -0.3351 5.9337 46 1 2.9243 0.3686 10.5000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397848745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:49 Heat of formation + Delta-G solvation = 4.796391 kcal Electronic energy + Delta-G solvation = -19005.570745 eV Core-core repulsion = 16316.278860 eV Total energy + Delta-G solvation = -2689.291884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79096 -37.33143 -34.53688 -32.35281 -30.64168 -29.52966 -28.77910 -27.57195 -26.36484 -24.68297 -22.94420 -20.99730 -20.01165 -19.89005 -18.66952 -16.67960 -16.24025 -15.44355 -15.12487 -14.54304 -14.23294 -14.09756 -14.00234 -13.90088 -13.37302 -13.02555 -12.70660 -12.56190 -12.42809 -12.07854 -12.04629 -11.83171 -11.80927 -11.64906 -11.41572 -11.24564 -11.01409 -10.76261 -10.63541 -10.36325 -10.02464 -9.83979 -9.73653 -9.60660 -9.38667 -9.10348 -8.48912 -8.17641 -5.99772 -3.97081 3.34697 3.41518 3.44747 3.46449 3.98584 4.38378 4.49944 4.62393 4.65139 4.83356 5.01772 5.07562 5.21009 5.28150 5.32694 5.35175 5.35239 5.42584 5.48997 5.55655 5.61074 5.63982 5.66856 5.67937 5.71761 5.77682 5.90719 5.91799 5.98103 6.04403 6.07320 6.11953 6.21720 6.25796 6.45772 6.72103 6.83288 6.97587 7.16376 7.23158 7.39536 7.52439 7.85929 8.59900 9.05703 9.63450 11.13909 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.046463 B = 0.003244 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.479917 B = 8628.466648 C = 8845.147744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.113 3.887 3 H 0.080 0.920 4 C -0.131 4.131 5 H 0.105 0.895 6 C -0.164 4.164 7 C -0.130 4.130 8 C -0.113 4.113 9 C -0.120 4.120 10 N -0.534 5.534 11 C 0.017 3.983 12 C 0.055 3.945 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.014 4.014 16 C -0.519 4.519 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -3.075 -26.844 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.005 3.995 3 H 0.098 0.902 4 C -0.149 4.149 5 H 0.123 0.877 6 C -0.201 4.201 7 C -0.131 4.131 8 C -0.171 4.171 9 C -0.177 4.177 10 N -0.257 5.257 11 C -0.131 4.131 12 C -0.072 4.072 13 C -0.154 4.154 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.088 0.912 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.294 -3.083 -26.668 26.943 hybrid contribution -0.207 -0.724 0.331 0.822 sum -2.501 -3.807 -26.337 26.728 Atomic orbital electron populations 1.22645 0.97574 1.02436 1.02535 1.21227 0.92379 0.97357 0.88578 0.90220 1.22440 1.02682 0.99061 0.90762 0.87716 1.23230 0.90903 1.02568 1.03407 1.21582 0.98766 0.98055 0.94689 1.21324 1.01465 0.98204 0.96070 1.21520 0.99863 0.94568 1.01701 1.62210 1.59270 1.02382 1.01800 1.22482 0.97809 0.90294 1.02549 1.22226 0.97799 0.97922 0.89270 1.21707 1.00491 0.99599 0.93614 1.21422 1.00061 0.98952 0.93502 1.19565 0.95347 0.96303 0.93883 1.21198 1.27272 1.16740 0.90479 0.91154 1.25054 0.96411 0.96485 0.95724 1.69925 1.44753 1.41147 0.98747 0.86756 0.81776 0.83353 0.77275 1.20308 1.21486 1.18998 0.92467 0.92324 0.91290 0.88822 0.89101 0.92433 0.92269 0.92559 0.92305 0.92475 0.91626 0.91751 0.90976 0.95492 0.91130 0.94802 0.92596 0.91752 0.92923 0.93135 0.96818 0.97095 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.17 37.16 0.30 -1.61 16 2 C 0.11 1.21 1.94 -67.71 -0.13 1.08 16 3 H 0.08 0.89 7.13 -51.93 -0.37 0.52 16 4 C -0.13 -1.25 4.70 -90.62 -0.43 -1.68 16 5 H 0.10 1.03 6.16 -51.93 -0.32 0.71 16 6 C -0.16 -1.48 9.47 -26.70 -0.25 -1.73 16 7 C -0.13 -1.06 2.63 -154.48 -0.41 -1.47 16 8 C -0.11 -0.80 9.85 37.16 0.37 -0.43 16 9 C -0.12 -0.90 8.27 37.15 0.31 -0.59 16 10 N -0.53 -6.76 4.75 -234.89 -1.12 -7.88 16 11 C 0.02 0.19 8.71 60.07 0.52 0.72 16 12 C 0.06 0.78 4.41 -3.82 -0.02 0.76 16 13 C -0.12 -1.93 5.15 -26.73 -0.14 -2.07 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 16 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 20 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 24 H 0.06 0.57 6.83 -51.93 -0.35 0.21 16 25 H 0.06 0.63 6.40 -51.93 -0.33 0.30 16 26 H 0.07 0.59 4.81 -51.93 -0.25 0.34 16 27 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 28 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.04 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 32 H 0.06 0.46 7.21 -51.93 -0.37 0.08 16 33 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.07 0.48 5.75 -51.93 -0.30 0.18 16 35 H 0.06 0.67 6.11 -51.93 -0.32 0.35 16 36 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 37 H 0.03 0.30 6.46 -51.93 -0.34 -0.03 16 38 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 39 H 0.03 0.48 6.76 -51.93 -0.35 0.12 16 40 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -30.71 342.73 -8.91 -39.62 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -8.51 Total: -3.32 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -0.55 Total: -23.41 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.34 Total: -35.69 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.71 -8.91 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397848745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.413 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds