Wall clock time and date at job start Mon Mar 30 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47403 * 2 1 4 4 C 1.53004 * 109.47384 * 120.00365 * 2 1 3 5 5 H 1.08994 * 115.54965 * 88.40194 * 4 2 1 6 6 C 1.53005 * 117.49684 * 302.73548 * 4 2 1 7 7 C 1.53004 * 117.49853 * 234.11292 * 4 2 1 8 8 C 1.52994 * 117.49593 * 214.97527 * 7 4 2 9 9 C 1.52997 * 117.49898 * 359.97438 * 7 4 2 10 10 N 1.46895 * 109.47173 * 240.00081 * 2 1 3 11 11 C 1.46905 * 111.00440 * 186.63374 * 10 2 1 12 12 C 1.46900 * 111.00033 * 62.68172 * 10 2 1 13 13 C 1.53001 * 109.47385 * 190.00498 * 12 10 2 14 14 C 1.53004 * 109.47239 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47320 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47330 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99785 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47155 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46820 * 120.00326 * 20 18 16 23 23 H 1.48497 * 109.47343 * 240.00461 * 20 18 16 24 24 H 1.09003 * 109.47383 * 174.02215 * 1 2 3 25 25 H 1.09007 * 109.47286 * 294.01815 * 1 2 3 26 26 H 1.08998 * 109.47301 * 54.01926 * 1 2 3 27 27 H 1.08999 * 117.49616 * 359.97438 * 6 4 2 28 28 H 1.08998 * 117.50197 * 144.99705 * 6 4 2 29 29 H 1.09000 * 109.47279 * 60.00345 * 8 7 4 30 30 H 1.09002 * 109.47044 * 179.97438 * 8 7 4 31 31 H 1.09001 * 109.47650 * 299.99766 * 8 7 4 32 32 H 1.09006 * 109.47101 * 58.06293 * 9 7 4 33 33 H 1.08994 * 109.47333 * 178.06484 * 9 7 4 34 34 H 1.09000 * 109.47217 * 298.06358 * 9 7 4 35 35 H 1.09003 * 109.46722 * 57.17092 * 11 10 2 36 36 H 1.09000 * 109.46787 * 177.16951 * 11 10 2 37 37 H 1.09001 * 109.47025 * 297.16980 * 11 10 2 38 38 H 1.09005 * 109.46916 * 310.00262 * 12 10 2 39 39 H 1.08997 * 109.47385 * 69.99986 * 12 10 2 40 40 H 1.09005 * 109.46901 * 299.99774 * 13 12 10 41 41 H 1.08997 * 109.47277 * 59.99423 * 13 12 10 42 42 H 1.09005 * 109.46850 * 299.99635 * 14 13 12 43 43 H 1.08993 * 109.47103 * 59.99507 * 14 13 12 44 44 H 1.09005 * 109.47083 * 299.99764 * 15 14 13 45 45 H 1.09006 * 109.47235 * 59.99452 * 15 14 13 46 46 H 0.96999 * 120.00286 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1709 -1.7988 1.1494 6 6 1.5836 -0.1881 2.6087 7 6 3.0256 0.0304 2.1461 8 6 4.1199 -0.7878 2.8345 9 6 3.4261 1.4457 1.7249 10 7 2.0196 -0.6925 -1.1994 11 6 3.4795 -0.8508 -1.1569 12 6 1.6017 0.0097 -2.4202 13 6 1.9090 -0.8611 -3.6401 14 6 1.4743 -0.1295 -4.9116 15 6 1.7822 -1.0000 -6.1315 16 6 1.3535 -0.2796 -7.3838 17 1 0.9065 0.7012 -7.3164 18 6 1.5328 -0.8723 -8.6157 19 7 2.0776 -2.0665 -8.6978 20 14 1.0007 0.0203 -10.1680 21 1 0.4198 1.3383 -9.8066 22 1 2.1779 0.2238 -11.0500 23 1 -0.0179 -0.7913 -10.8812 24 1 -0.3634 -1.0221 -0.1070 25 1 -0.3634 0.4183 0.9387 26 1 -0.3634 0.6037 -0.8316 27 1 0.9203 0.6769 2.6131 28 1 1.4142 -0.9147 3.4033 29 1 4.7343 -1.2798 2.0805 30 1 4.7437 -0.1267 3.4361 31 1 3.6616 -1.5397 3.4770 32 1 2.5343 2.0677 1.6471 33 1 4.1005 1.8691 2.4691 34 1 3.9287 1.4086 0.7584 35 1 3.7600 -1.3912 -0.2528 36 1 3.8098 -1.4104 -2.0320 37 1 3.9516 0.1316 -1.1543 38 1 0.5309 0.2087 -2.3763 39 1 2.1433 0.9522 -2.5008 40 1 2.9798 -1.0601 -3.6839 41 1 1.3674 -1.8035 -3.5595 42 1 0.4035 0.0699 -4.8680 43 1 2.0163 0.8127 -4.9919 44 1 2.8530 -1.1990 -6.1749 45 1 1.2405 -1.9425 -6.0513 46 1 2.2034 -2.4837 -9.5644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397848749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:57 Heat of formation + Delta-G solvation = -4.052850 kcal Electronic energy + Delta-G solvation = -19039.074660 eV Core-core repulsion = 16349.399043 eV Total energy + Delta-G solvation = -2689.675616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72590 -37.07528 -34.32628 -32.36032 -31.15213 -28.90423 -28.61695 -27.78192 -25.67416 -24.59035 -23.13668 -20.93777 -19.98212 -19.88627 -18.73830 -16.32707 -16.11712 -15.33942 -14.99248 -14.75119 -14.39650 -14.14708 -13.94372 -13.50262 -13.12251 -12.73957 -12.61732 -12.44997 -12.40674 -12.05646 -11.96057 -11.81987 -11.55250 -11.46230 -11.39993 -11.22857 -10.96228 -10.75008 -10.44214 -10.39570 -10.24124 -10.07536 -9.60918 -9.55175 -9.20755 -8.94853 -8.29945 -8.14885 -5.94795 -3.96761 3.33703 3.40882 3.45270 3.47951 3.93569 4.45186 4.50219 4.52385 4.75569 4.83968 5.10319 5.21363 5.29026 5.33826 5.38259 5.40713 5.44193 5.51349 5.56323 5.63568 5.65877 5.68401 5.68624 5.74839 5.80822 5.86606 5.92061 6.02969 6.05392 6.08772 6.12179 6.22893 6.26494 6.37440 6.60383 6.88371 7.04160 7.16946 7.25048 7.34956 7.75271 7.91564 8.06889 8.49889 9.11101 9.66933 11.16609 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.046554 B = 0.003153 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.310360 B = 8877.404378 C = 9052.585296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.107 3.893 3 H 0.043 0.957 4 C -0.130 4.130 5 H 0.110 0.890 6 C -0.169 4.169 7 C -0.133 4.133 8 C -0.114 4.114 9 C -0.115 4.115 10 N -0.535 5.535 11 C 0.024 3.976 12 C 0.053 3.947 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 4.283 23.870 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 H 0.061 0.939 4 C -0.149 4.149 5 H 0.128 0.872 6 C -0.206 4.206 7 C -0.133 4.133 8 C -0.171 4.171 9 C -0.172 4.172 10 N -0.259 5.259 11 C -0.124 4.124 12 C -0.074 4.074 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.314 3.691 23.737 24.058 hybrid contribution 0.113 1.183 -0.943 1.517 sum 1.426 4.874 22.795 23.353 Atomic orbital electron populations 1.21859 0.94275 1.02849 1.01206 1.21196 0.95347 0.95022 0.88560 0.93902 1.22448 1.02434 0.99616 0.90390 0.87178 1.23246 0.96585 1.03168 0.97646 1.21645 0.91256 0.96936 1.03431 1.21337 0.97149 0.98955 0.99651 1.21358 1.01168 0.93524 1.01183 1.62072 1.11834 1.50505 1.01536 1.22411 0.87534 0.99862 1.02596 1.22298 1.00539 0.95210 0.89335 1.21658 1.01092 0.99101 0.93200 1.21596 0.99583 0.98947 0.94594 1.19089 0.96783 0.94817 0.90892 1.21336 1.39857 1.03026 0.91464 0.92750 1.25037 0.95420 0.94972 0.99151 1.69980 1.44449 1.14744 1.24404 0.86564 0.78299 0.79859 0.83449 1.19777 1.21065 1.21028 0.91558 0.92491 0.92499 0.88952 0.88934 0.92213 0.92336 0.92551 0.92518 0.92290 0.92249 0.91562 0.90975 0.96178 0.90776 0.95434 0.92641 0.91752 0.93534 0.93795 0.96773 0.96621 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.79 37.15 0.33 -1.22 16 2 C 0.11 1.21 2.18 -67.72 -0.15 1.06 16 3 H 0.04 0.50 5.91 -51.93 -0.31 0.19 16 4 C -0.13 -1.29 3.46 -90.61 -0.31 -1.60 16 5 H 0.11 1.19 7.86 -51.93 -0.41 0.78 16 6 C -0.17 -1.42 8.93 -26.73 -0.24 -1.66 16 7 C -0.13 -1.15 2.70 -154.51 -0.42 -1.57 16 8 C -0.11 -0.87 9.85 37.15 0.37 -0.51 16 9 C -0.12 -0.99 8.34 37.16 0.31 -0.68 16 10 N -0.54 -7.16 4.63 -234.88 -1.09 -8.25 16 11 C 0.02 0.30 9.03 60.07 0.54 0.84 16 12 C 0.05 0.80 4.80 -3.82 -0.02 0.78 16 13 C -0.11 -2.01 5.14 -26.73 -0.14 -2.15 16 14 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.52 6.92 -51.92 -0.36 0.16 16 26 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 27 H 0.09 0.75 7.32 -51.93 -0.38 0.37 16 28 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.40 7.94 -51.93 -0.41 -0.01 16 31 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 32 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 33 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 34 H 0.06 0.56 7.63 -51.93 -0.40 0.16 16 35 H 0.07 0.75 6.61 -51.93 -0.34 0.40 16 36 H 0.07 0.97 6.42 -51.93 -0.33 0.63 16 37 H 0.02 0.24 7.76 -51.93 -0.40 -0.16 16 38 H 0.07 1.08 6.05 -51.93 -0.31 0.77 16 39 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.05 0.99 6.53 -51.93 -0.34 0.66 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -30.22 352.68 -9.36 -39.58 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -8.88 Total: -4.24 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -0.42 Total: -22.63 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.35 Total: -35.08 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.22 -9.36 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397848749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.526 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds