Wall clock time and date at job start Mon Mar 30 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47403 * 2 1 4 4 C 1.53004 * 109.47384 * 120.00365 * 2 1 3 5 5 H 1.08994 * 115.54965 * 88.40194 * 4 2 1 6 6 C 1.53005 * 117.49684 * 302.73548 * 4 2 1 7 7 C 1.53004 * 117.49853 * 234.11292 * 4 2 1 8 8 C 1.52994 * 117.49593 * 214.97527 * 7 4 2 9 9 C 1.52997 * 117.49898 * 359.97438 * 7 4 2 10 10 N 1.46895 * 109.47173 * 240.00081 * 2 1 3 11 11 C 1.46905 * 111.00440 * 186.63374 * 10 2 1 12 12 C 1.46900 * 111.00033 * 62.68172 * 10 2 1 13 13 C 1.53001 * 109.47385 * 190.00498 * 12 10 2 14 14 C 1.53004 * 109.47239 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47320 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47330 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99785 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47155 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46820 * 120.00326 * 20 18 16 23 23 H 1.48497 * 109.47343 * 240.00461 * 20 18 16 24 24 H 1.09003 * 109.47383 * 174.02215 * 1 2 3 25 25 H 1.09007 * 109.47286 * 294.01815 * 1 2 3 26 26 H 1.08998 * 109.47301 * 54.01926 * 1 2 3 27 27 H 1.08999 * 117.49616 * 359.97438 * 6 4 2 28 28 H 1.08998 * 117.50197 * 144.99705 * 6 4 2 29 29 H 1.09000 * 109.47279 * 60.00345 * 8 7 4 30 30 H 1.09002 * 109.47044 * 179.97438 * 8 7 4 31 31 H 1.09001 * 109.47650 * 299.99766 * 8 7 4 32 32 H 1.09006 * 109.47101 * 58.06293 * 9 7 4 33 33 H 1.08994 * 109.47333 * 178.06484 * 9 7 4 34 34 H 1.09000 * 109.47217 * 298.06358 * 9 7 4 35 35 H 1.09003 * 109.46722 * 57.17092 * 11 10 2 36 36 H 1.09000 * 109.46787 * 177.16951 * 11 10 2 37 37 H 1.09001 * 109.47025 * 297.16980 * 11 10 2 38 38 H 1.09005 * 109.46916 * 310.00262 * 12 10 2 39 39 H 1.08997 * 109.47385 * 69.99986 * 12 10 2 40 40 H 1.09005 * 109.46901 * 299.99774 * 13 12 10 41 41 H 1.08997 * 109.47277 * 59.99423 * 13 12 10 42 42 H 1.09005 * 109.46850 * 299.99635 * 14 13 12 43 43 H 1.08993 * 109.47103 * 59.99507 * 14 13 12 44 44 H 1.09005 * 109.47083 * 299.99764 * 15 14 13 45 45 H 1.09006 * 109.47235 * 59.99452 * 15 14 13 46 46 H 0.96999 * 120.00286 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1709 -1.7988 1.1494 6 6 1.5836 -0.1881 2.6087 7 6 3.0256 0.0304 2.1461 8 6 4.1199 -0.7878 2.8345 9 6 3.4261 1.4457 1.7249 10 7 2.0196 -0.6925 -1.1994 11 6 3.4795 -0.8508 -1.1569 12 6 1.6017 0.0097 -2.4202 13 6 1.9090 -0.8611 -3.6401 14 6 1.4743 -0.1295 -4.9116 15 6 1.7822 -1.0000 -6.1315 16 6 1.3535 -0.2796 -7.3838 17 1 0.9065 0.7012 -7.3164 18 6 1.5328 -0.8723 -8.6157 19 7 2.0776 -2.0665 -8.6978 20 14 1.0007 0.0203 -10.1680 21 1 0.4198 1.3383 -9.8066 22 1 2.1779 0.2238 -11.0500 23 1 -0.0179 -0.7913 -10.8812 24 1 -0.3634 -1.0221 -0.1070 25 1 -0.3634 0.4183 0.9387 26 1 -0.3634 0.6037 -0.8316 27 1 0.9203 0.6769 2.6131 28 1 1.4142 -0.9147 3.4033 29 1 4.7343 -1.2798 2.0805 30 1 4.7437 -0.1267 3.4361 31 1 3.6616 -1.5397 3.4770 32 1 2.5343 2.0677 1.6471 33 1 4.1005 1.8691 2.4691 34 1 3.9287 1.4086 0.7584 35 1 3.7600 -1.3912 -0.2528 36 1 3.8098 -1.4104 -2.0320 37 1 3.9516 0.1316 -1.1543 38 1 0.5309 0.2087 -2.3763 39 1 2.1433 0.9522 -2.5008 40 1 2.9798 -1.0601 -3.6839 41 1 1.3674 -1.8035 -3.5595 42 1 0.4035 0.0699 -4.8680 43 1 2.0163 0.8127 -4.9919 44 1 2.8530 -1.1990 -6.1749 45 1 1.2405 -1.9425 -6.0513 46 1 2.2034 -2.4837 -9.5644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397848749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:57 Heat of formation + Delta-G solvation = -19.947478 kcal Electronic energy + Delta-G solvation = -19039.763902 eV Core-core repulsion = 16349.399043 eV Total energy + Delta-G solvation = -2690.364859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55249 -38.13547 -36.11685 -34.23138 -32.23900 -30.30764 -29.59506 -28.43124 -27.22018 -25.74883 -24.53772 -22.36351 -21.60437 -20.76669 -19.50020 -18.42942 -17.24943 -16.56258 -16.30514 -16.13228 -15.75132 -15.09111 -14.80024 -14.65728 -14.37884 -13.94045 -13.78187 -13.70541 -13.39246 -13.22352 -13.07392 -12.99484 -12.78751 -12.73175 -12.54776 -12.39090 -12.23873 -12.12834 -12.10091 -11.93751 -11.54601 -11.29759 -11.23840 -11.02575 -10.74706 -10.56131 -10.30861 -9.20656 -8.19979 -6.31550 1.39312 1.39920 1.53481 2.40751 2.75361 2.96015 3.12636 3.69998 3.84061 3.98920 4.09696 4.18652 4.20840 4.24553 4.36142 4.49018 4.52987 4.57288 4.64097 4.69142 4.76488 4.80600 4.82977 4.88425 4.92942 4.94490 5.03851 5.04935 5.06243 5.11801 5.12672 5.22459 5.27967 5.30792 5.34977 5.38674 5.39690 5.47675 5.55626 5.77599 5.86782 6.16555 6.24378 6.28076 6.86109 7.37783 8.92198 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.046554 B = 0.003153 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.310360 B = 8877.404378 C = 9052.585296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.109 3.891 3 H 0.043 0.957 4 C -0.142 4.142 5 H 0.100 0.900 6 C -0.158 4.158 7 C -0.131 4.131 8 C -0.114 4.114 9 C -0.115 4.115 10 N -0.545 5.545 11 C 0.028 3.972 12 C 0.064 3.936 13 C -0.102 4.102 14 C -0.096 4.096 15 C 0.024 3.976 16 C -0.544 4.544 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.022 0.978 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.048 0.952 44 H -0.012 1.012 45 H -0.011 1.011 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 5.659 24.905 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.160 4.160 5 H 0.118 0.882 6 C -0.195 4.195 7 C -0.131 4.131 8 C -0.171 4.171 9 C -0.172 4.172 10 N -0.269 5.269 11 C -0.120 4.120 12 C -0.064 4.064 13 C -0.140 4.140 14 C -0.134 4.134 15 C -0.013 4.013 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.834 5.073 24.793 25.321 hybrid contribution 0.285 0.712 -1.231 1.450 sum 1.119 5.785 23.563 24.288 Atomic orbital electron populations 1.21854 0.93861 1.02271 1.01999 1.21230 0.95656 0.94928 0.88099 0.93894 1.22311 1.04211 0.98983 0.90528 0.88203 1.23309 0.96344 1.03268 0.96587 1.21734 0.91747 0.96868 1.02778 1.21351 0.96944 0.99135 0.99648 1.21359 1.01343 0.93537 1.00967 1.62034 1.12341 1.50799 1.01739 1.22377 0.87148 0.99954 1.02569 1.22078 1.00963 0.94476 0.88834 1.21478 1.00517 0.98790 0.93179 1.21400 0.99982 0.98255 0.93796 1.19009 0.94593 0.94581 0.93124 1.21769 1.40194 1.03511 0.92692 0.92200 1.26033 0.95206 0.95777 1.03072 1.70114 1.45360 1.16419 1.25618 0.85372 0.78085 0.78874 0.78554 1.18515 1.20291 1.20265 0.92509 0.90683 0.92998 0.88373 0.87933 0.92663 0.91431 0.92010 0.92477 0.91173 0.93310 0.90305 0.92350 0.95906 0.90198 0.95222 0.93081 0.92780 0.93005 0.93312 0.99342 0.99285 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.79 71.98 0.63 -2.21 16 2 C 0.11 2.31 2.18 44.92 0.10 2.41 16 3 H 0.04 0.93 5.91 -2.39 -0.01 0.92 16 4 C -0.14 -2.59 3.46 -10.79 -0.04 -2.62 16 5 H 0.10 2.05 7.86 -2.39 -0.02 2.03 16 6 C -0.16 -2.28 8.93 30.60 0.27 -2.00 16 7 C -0.13 -2.02 2.70 -52.18 -0.14 -2.17 16 8 C -0.11 -1.53 9.85 71.98 0.71 -0.82 16 9 C -0.12 -1.75 8.34 71.98 0.60 -1.15 16 10 N -0.54 -14.21 4.63 -897.04 -4.15 -18.36 16 11 C 0.03 0.68 9.03 127.69 1.15 1.83 16 12 C 0.06 1.87 4.80 86.30 0.41 2.29 16 13 C -0.10 -3.66 5.14 30.60 0.16 -3.51 16 14 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 15 C 0.02 1.33 4.97 29.85 0.15 1.47 16 16 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 19 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 20 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.21 6.92 -2.38 -0.02 1.19 16 26 H 0.05 1.07 6.57 -2.39 -0.02 1.06 16 27 H 0.10 1.32 7.32 -2.39 -0.02 1.30 16 28 H 0.10 1.29 8.05 -2.39 -0.02 1.27 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.78 7.94 -2.39 -0.02 0.77 16 31 H 0.06 0.76 7.90 -2.39 -0.02 0.74 16 32 H 0.06 0.86 7.38 -2.38 -0.02 0.84 16 33 H 0.07 0.90 7.95 -2.39 -0.02 0.88 16 34 H 0.05 0.85 7.63 -2.39 -0.02 0.83 16 35 H 0.08 1.72 6.61 -2.39 -0.02 1.70 16 36 H 0.06 1.58 6.42 -2.39 -0.02 1.56 16 37 H 0.02 0.54 7.76 -2.39 -0.02 0.52 16 38 H 0.08 2.25 6.05 -2.38 -0.01 2.23 16 39 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.05 1.87 6.53 -2.38 -0.02 1.85 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 45 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 46 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -64.64 352.68 3.92 -60.72 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.90 Total: 10.59 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 4.86 Total: -42.00 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.87 Total: -76.53 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.64 3.92 -60.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397848749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.774 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds