Wall clock time and date at job start Mon Mar 30 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47305 * 2 1 4 4 C 1.53000 * 109.47035 * 119.99912 * 2 1 3 5 5 N 1.46893 * 109.47272 * 295.41112 * 4 2 1 6 6 C 1.46899 * 111.00133 * 288.81708 * 5 4 2 7 7 C 1.46899 * 111.00467 * 164.85779 * 5 4 2 8 8 C 1.52994 * 109.47286 * 196.68379 * 7 5 4 9 9 C 1.50694 * 115.55218 * 295.07576 * 8 7 5 10 10 H 1.08000 * 120.00195 * 144.48377 * 9 8 7 11 11 C 1.37881 * 120.00084 * 324.48311 * 9 8 7 12 12 N 1.31514 * 119.99843 * 356.49740 * 11 9 8 13 13 Si 1.86802 * 119.99911 * 176.49590 * 11 9 8 14 14 H 1.48497 * 109.47171 * 60.00301 * 13 11 9 15 15 H 1.48504 * 109.46843 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47295 * 300.00142 * 13 11 9 17 17 C 1.53004 * 117.49824 * 149.40712 * 8 7 5 18 18 C 1.53004 * 117.49811 * 80.75289 * 8 7 5 19 19 C 1.53004 * 109.47241 * 239.99732 * 2 1 3 20 20 C 1.53001 * 109.47161 * 300.00236 * 19 2 1 21 21 C 1.53000 * 109.46959 * 60.00134 * 19 2 1 22 22 C 1.53005 * 109.47295 * 180.02562 * 19 2 1 23 23 H 1.08997 * 109.47528 * 304.15794 * 1 2 3 24 24 H 1.09003 * 109.47213 * 64.16019 * 1 2 3 25 25 H 1.09002 * 109.47051 * 184.15639 * 1 2 3 26 26 H 1.09009 * 109.47054 * 175.41141 * 4 2 1 27 27 H 1.09003 * 109.47465 * 55.41368 * 4 2 1 28 28 H 1.08996 * 109.47443 * 50.59900 * 6 5 4 29 29 H 1.09000 * 109.47384 * 170.60091 * 6 5 4 30 30 H 1.09004 * 109.47070 * 290.59319 * 6 5 4 31 31 H 1.09003 * 109.46922 * 316.68523 * 7 5 4 32 32 H 1.09002 * 109.46734 * 76.68051 * 7 5 4 33 33 H 0.96996 * 119.99704 * 184.99285 * 12 11 9 34 34 H 1.09005 * 117.50036 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49970 * 145.01351 * 17 8 7 36 36 H 1.09003 * 117.49233 * 214.97448 * 18 8 7 37 37 H 1.08989 * 117.49990 * 359.97086 * 18 8 7 38 38 H 1.08999 * 109.47337 * 59.99861 * 20 19 2 39 39 H 1.08998 * 109.47122 * 180.02562 * 20 19 2 40 40 H 1.08999 * 109.46860 * 299.99402 * 20 19 2 41 41 H 1.08997 * 109.47003 * 60.00089 * 21 19 2 42 42 H 1.08998 * 109.46911 * 179.97438 * 21 19 2 43 43 H 1.08999 * 109.47065 * 299.99850 * 21 19 2 44 44 H 1.08991 * 109.47067 * 59.99816 * 22 19 2 45 45 H 1.08995 * 109.47237 * 180.02562 * 22 19 2 46 46 H 1.09004 * 109.46763 * 300.00023 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6428 0.0322 2.4461 6 6 2.4073 1.2815 2.5594 7 6 1.7900 -0.7867 3.6567 8 6 0.9988 -0.1511 4.8017 9 6 1.4882 1.1988 5.2590 10 1 0.7813 1.9479 5.5837 11 6 2.8386 1.4775 5.2630 12 7 3.7037 0.5434 4.9336 13 14 3.4390 3.1819 5.7363 14 1 3.0045 3.4928 7.1218 15 1 4.9216 3.2229 5.6610 16 1 2.8684 4.1850 4.8017 17 6 0.4148 -1.0871 5.8617 18 6 -0.5087 -0.4086 4.8469 19 6 2.0400 -0.7213 -1.2492 20 6 1.5299 -2.1638 -1.2492 21 6 1.5300 -0.0001 -2.4985 22 6 3.5700 -0.7219 -1.2489 23 1 -0.3634 0.5770 0.8503 24 1 -0.3634 0.4479 -0.9249 25 1 -0.3633 -1.0250 0.0745 26 1 3.1269 -0.7930 1.2091 27 1 1.6110 -1.7225 1.2914 28 1 2.3599 1.8235 1.6149 29 1 1.9829 1.8965 3.3529 30 1 3.4465 1.0515 2.7946 31 1 1.4094 -1.7900 3.4651 32 1 2.8434 -0.8439 3.9308 33 1 4.6554 0.7166 5.0059 34 1 0.5945 -2.1558 5.7436 35 1 0.3843 -0.7265 6.8898 36 1 -1.1464 0.3983 5.2079 37 1 -0.9369 -1.0304 4.0608 38 1 0.4399 -2.1638 -1.2492 39 1 1.8937 -2.6778 -2.1389 40 1 1.8933 -2.6776 -0.3592 41 1 1.8933 1.0275 -2.4985 42 1 1.8937 -0.5137 -3.3884 43 1 0.4400 -0.0001 -2.4985 44 1 3.9329 -1.2359 -0.3590 45 1 3.9333 -1.2353 -2.1391 46 1 3.9337 0.3057 -1.2487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399668328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:32 Heat of formation + Delta-G solvation = 22.588393 kcal Electronic energy + Delta-G solvation = -20642.809003 eV Core-core repulsion = 17954.288638 eV Total energy + Delta-G solvation = -2688.520365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.82008 -37.07662 -34.44060 -32.35415 -30.39707 -27.82301 -27.19371 -26.10334 -25.86094 -25.02200 -22.66800 -21.03930 -20.24869 -18.82819 -17.72382 -16.09849 -15.31684 -14.81069 -14.59879 -14.17446 -13.95285 -13.76444 -13.41939 -13.13788 -12.66909 -12.53661 -12.07217 -11.78822 -11.73738 -11.61602 -11.44918 -11.37161 -11.17537 -10.94629 -10.88095 -10.66044 -10.47388 -10.26302 -10.18060 -10.07922 -9.91588 -9.87353 -9.71170 -9.18976 -8.82357 -8.54511 -7.96541 -6.97660 -5.86789 -4.01873 3.25932 3.31610 3.34910 4.33326 4.80495 5.00598 5.03433 5.03915 5.35718 5.50398 5.66739 5.69315 5.78464 5.79632 5.87842 5.93514 5.96226 6.06965 6.12454 6.19804 6.20615 6.30108 6.34814 6.38140 6.40981 6.52246 6.54801 6.66703 6.68498 6.81164 6.84754 6.86872 6.92911 6.97223 7.06839 7.19563 7.39757 7.44925 7.62456 7.67857 8.09062 8.45308 8.51060 8.55983 8.91411 9.49995 10.94726 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.006769 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.588069 B = 4135.312321 C = 4737.818622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.067 0.933 4 C 0.059 3.941 5 N -0.522 5.522 6 C 0.019 3.981 7 C 0.081 3.919 8 C 0.063 3.937 9 C -0.471 4.471 10 H 0.058 0.942 11 C 0.072 3.928 12 N -0.881 5.881 13 Si 0.886 3.114 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.210 4.210 18 C -0.200 4.200 19 C -0.065 4.065 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.143 4.143 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.103 0.897 30 H 0.035 0.965 31 H 0.018 0.982 32 H 0.103 0.897 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -2.586 -11.131 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 H 0.085 0.915 4 C -0.070 4.070 5 N -0.245 5.245 6 C -0.129 4.129 7 C -0.046 4.046 8 C 0.063 3.937 9 C -0.509 4.509 10 H 0.076 0.924 11 C -0.129 4.129 12 N -0.520 5.520 13 Si 0.713 3.287 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.248 4.248 18 C -0.237 4.237 19 C -0.066 4.066 20 C -0.199 4.199 21 C -0.197 4.197 22 C -0.200 4.200 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.121 0.879 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.849 -2.464 -11.253 11.667 hybrid contribution 1.159 0.555 0.412 1.350 sum -0.690 -1.909 -10.840 11.029 Atomic orbital electron populations 1.21761 0.95130 1.01384 1.00996 1.21115 0.96202 0.99154 0.92771 0.91507 1.22194 0.96964 0.96673 0.91159 1.61862 1.55592 1.05599 1.01494 1.22899 0.97488 0.92653 0.99823 1.22033 1.03648 0.91120 0.87761 1.18892 0.88378 0.94119 0.92359 1.20520 0.91578 0.97013 1.41760 0.92415 1.24918 0.96741 0.96892 0.94303 1.69719 1.01805 1.32600 1.47860 0.86763 0.77727 0.84931 0.79262 1.20237 1.21173 1.19841 1.22960 1.09044 0.96886 0.95937 1.22740 0.96536 1.02783 1.01685 1.20556 0.95151 0.95543 0.95349 1.21939 1.01133 0.95644 1.01179 1.21905 1.01153 0.99944 0.96717 1.21927 0.95134 1.01566 1.01361 0.91322 0.94048 0.93433 0.95869 0.92414 0.96263 0.87898 0.94671 0.96303 0.87941 0.92890 0.92057 0.90788 0.91260 0.91524 0.92448 0.93553 0.92435 0.93005 0.93366 0.92374 0.92185 0.93406 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.31 37.15 0.31 -1.74 16 2 C -0.07 -1.14 1.75 -90.62 -0.16 -1.30 16 3 H 0.07 1.13 6.42 -51.93 -0.33 0.79 16 4 C 0.06 1.07 3.65 -3.83 -0.01 1.06 16 5 N -0.52 -11.28 4.19 -242.92 -1.02 -12.29 16 6 C 0.02 0.43 7.80 60.06 0.47 0.90 16 7 C 0.08 1.93 4.71 -3.83 -0.02 1.91 16 8 C 0.06 1.56 2.04 -155.66 -0.32 1.25 16 9 C -0.47 -12.41 7.06 -34.44 -0.24 -12.65 16 10 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 11 C 0.07 1.86 3.10 -17.82 -0.06 1.81 16 12 N -0.88 -23.11 8.53 55.43 0.47 -22.64 16 13 Si 0.89 20.31 29.29 -169.99 -4.98 15.33 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.21 -4.84 9.93 -26.69 -0.26 -5.11 16 18 C -0.20 -4.51 9.96 -26.69 -0.27 -4.78 16 19 C -0.07 -0.85 0.57 -154.50 -0.09 -0.93 16 20 C -0.14 -1.73 7.77 37.16 0.29 -1.44 16 21 C -0.14 -1.60 8.13 37.16 0.30 -1.30 16 22 C -0.14 -1.83 8.13 37.16 0.30 -1.53 16 23 H 0.07 1.19 7.86 -51.93 -0.41 0.79 16 24 H 0.04 0.55 6.22 -51.93 -0.32 0.22 16 25 H 0.05 0.70 6.66 -51.93 -0.35 0.35 16 26 H 0.02 0.44 6.12 -51.92 -0.32 0.13 16 27 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 28 H 0.02 0.39 6.30 -51.93 -0.33 0.06 16 29 H 0.10 2.58 4.23 -51.93 -0.22 2.36 16 30 H 0.03 0.85 6.34 -51.93 -0.33 0.52 16 31 H 0.02 0.43 7.67 -51.93 -0.40 0.03 16 32 H 0.10 2.69 5.14 -51.93 -0.27 2.42 16 33 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.07 1.43 8.14 -51.94 -0.42 1.01 16 38 H 0.06 0.69 6.52 -51.93 -0.34 0.35 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.75 6.53 -51.93 -0.34 0.41 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 44 H 0.06 0.83 6.33 -51.93 -0.33 0.50 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -25.42 330.59 -8.58 -34.00 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.28 Total: 4.48 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 0.24 Total: -23.86 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: -0.54 Total: -34.93 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.98 Total: 15.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.42 -8.58 -34.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399668328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.586 kcal (2) G-P(sol) polarization free energy of solvation -25.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds