Wall clock time and date at job start Mon Mar 30 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47305 * 2 1 4 4 C 1.53000 * 109.47035 * 119.99912 * 2 1 3 5 5 N 1.46893 * 109.47272 * 295.41112 * 4 2 1 6 6 C 1.46899 * 111.00133 * 288.81708 * 5 4 2 7 7 C 1.46899 * 111.00467 * 164.85779 * 5 4 2 8 8 C 1.52994 * 109.47286 * 196.68379 * 7 5 4 9 9 C 1.50694 * 115.55218 * 295.07576 * 8 7 5 10 10 H 1.08000 * 120.00195 * 144.48377 * 9 8 7 11 11 C 1.37881 * 120.00084 * 324.48311 * 9 8 7 12 12 N 1.31514 * 119.99843 * 356.49740 * 11 9 8 13 13 Si 1.86802 * 119.99911 * 176.49590 * 11 9 8 14 14 H 1.48497 * 109.47171 * 60.00301 * 13 11 9 15 15 H 1.48504 * 109.46843 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47295 * 300.00142 * 13 11 9 17 17 C 1.53004 * 117.49824 * 149.40712 * 8 7 5 18 18 C 1.53004 * 117.49811 * 80.75289 * 8 7 5 19 19 C 1.53004 * 109.47241 * 239.99732 * 2 1 3 20 20 C 1.53001 * 109.47161 * 300.00236 * 19 2 1 21 21 C 1.53000 * 109.46959 * 60.00134 * 19 2 1 22 22 C 1.53005 * 109.47295 * 180.02562 * 19 2 1 23 23 H 1.08997 * 109.47528 * 304.15794 * 1 2 3 24 24 H 1.09003 * 109.47213 * 64.16019 * 1 2 3 25 25 H 1.09002 * 109.47051 * 184.15639 * 1 2 3 26 26 H 1.09009 * 109.47054 * 175.41141 * 4 2 1 27 27 H 1.09003 * 109.47465 * 55.41368 * 4 2 1 28 28 H 1.08996 * 109.47443 * 50.59900 * 6 5 4 29 29 H 1.09000 * 109.47384 * 170.60091 * 6 5 4 30 30 H 1.09004 * 109.47070 * 290.59319 * 6 5 4 31 31 H 1.09003 * 109.46922 * 316.68523 * 7 5 4 32 32 H 1.09002 * 109.46734 * 76.68051 * 7 5 4 33 33 H 0.96996 * 119.99704 * 184.99285 * 12 11 9 34 34 H 1.09005 * 117.50036 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49970 * 145.01351 * 17 8 7 36 36 H 1.09003 * 117.49233 * 214.97448 * 18 8 7 37 37 H 1.08989 * 117.49990 * 359.97086 * 18 8 7 38 38 H 1.08999 * 109.47337 * 59.99861 * 20 19 2 39 39 H 1.08998 * 109.47122 * 180.02562 * 20 19 2 40 40 H 1.08999 * 109.46860 * 299.99402 * 20 19 2 41 41 H 1.08997 * 109.47003 * 60.00089 * 21 19 2 42 42 H 1.08998 * 109.46911 * 179.97438 * 21 19 2 43 43 H 1.08999 * 109.47065 * 299.99850 * 21 19 2 44 44 H 1.08991 * 109.47067 * 59.99816 * 22 19 2 45 45 H 1.08995 * 109.47237 * 180.02562 * 22 19 2 46 46 H 1.09004 * 109.46763 * 300.00023 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6428 0.0322 2.4461 6 6 2.4073 1.2815 2.5594 7 6 1.7900 -0.7867 3.6567 8 6 0.9988 -0.1511 4.8017 9 6 1.4882 1.1988 5.2590 10 1 0.7813 1.9479 5.5837 11 6 2.8386 1.4775 5.2630 12 7 3.7037 0.5434 4.9336 13 14 3.4390 3.1819 5.7363 14 1 3.0045 3.4928 7.1218 15 1 4.9216 3.2229 5.6610 16 1 2.8684 4.1850 4.8017 17 6 0.4148 -1.0871 5.8617 18 6 -0.5087 -0.4086 4.8469 19 6 2.0400 -0.7213 -1.2492 20 6 1.5299 -2.1638 -1.2492 21 6 1.5300 -0.0001 -2.4985 22 6 3.5700 -0.7219 -1.2489 23 1 -0.3634 0.5770 0.8503 24 1 -0.3634 0.4479 -0.9249 25 1 -0.3633 -1.0250 0.0745 26 1 3.1269 -0.7930 1.2091 27 1 1.6110 -1.7225 1.2914 28 1 2.3599 1.8235 1.6149 29 1 1.9829 1.8965 3.3529 30 1 3.4465 1.0515 2.7946 31 1 1.4094 -1.7900 3.4651 32 1 2.8434 -0.8439 3.9308 33 1 4.6554 0.7166 5.0059 34 1 0.5945 -2.1558 5.7436 35 1 0.3843 -0.7265 6.8898 36 1 -1.1464 0.3983 5.2079 37 1 -0.9369 -1.0304 4.0608 38 1 0.4399 -2.1638 -1.2492 39 1 1.8937 -2.6778 -2.1389 40 1 1.8933 -2.6776 -0.3592 41 1 1.8933 1.0275 -2.4985 42 1 1.8937 -0.5137 -3.3884 43 1 0.4400 -0.0001 -2.4985 44 1 3.9329 -1.2359 -0.3590 45 1 3.9333 -1.2353 -2.1391 46 1 3.9337 0.3057 -1.2487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399668328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:31 Heat of formation + Delta-G solvation = 10.970432 kcal Electronic energy + Delta-G solvation = -20643.312796 eV Core-core repulsion = 17954.288638 eV Total energy + Delta-G solvation = -2689.024158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15316 -38.75935 -36.09476 -34.29646 -31.69263 -28.98018 -28.27641 -27.86746 -27.67935 -26.48151 -24.11230 -22.86157 -21.76926 -20.74041 -18.92489 -17.99697 -16.81008 -16.59359 -16.07359 -15.61333 -15.49823 -15.14634 -14.71206 -14.58901 -14.31191 -14.05258 -13.52782 -13.28625 -13.15410 -12.91441 -12.78417 -12.71371 -12.67743 -12.51246 -12.34849 -12.12482 -12.04855 -11.87071 -11.82483 -11.79438 -11.37437 -11.16588 -11.05125 -10.87064 -10.74725 -10.42453 -9.87972 -8.78237 -7.82149 -6.04761 1.41308 1.44253 1.49703 2.41827 3.01989 3.42390 3.82469 3.93299 3.95725 4.08181 4.27094 4.39446 4.55097 4.60728 4.65115 4.70597 4.81030 4.83544 4.85651 4.88760 4.97638 5.00549 5.02482 5.03506 5.07717 5.11104 5.13467 5.20729 5.22193 5.26746 5.30867 5.35722 5.38274 5.52647 5.53422 5.60824 5.63502 5.66593 5.75339 5.78885 6.13300 6.52458 6.66647 6.74485 6.94928 7.48672 8.94855 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.006769 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.588069 B = 4135.312321 C = 4737.818622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 H 0.052 0.948 4 C 0.063 3.937 5 N -0.523 5.523 6 C 0.033 3.967 7 C 0.091 3.909 8 C 0.034 3.966 9 C -0.489 4.489 10 H 0.045 0.955 11 C 0.045 3.955 12 N -0.894 5.894 13 Si 0.933 3.067 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.269 1.269 17 C -0.207 4.207 18 C -0.183 4.183 19 C -0.062 4.062 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.141 4.141 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.013 0.987 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.015 0.985 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.258 0.742 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -2.812 -12.821 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.066 4.066 5 N -0.246 5.246 6 C -0.115 4.115 7 C -0.037 4.037 8 C 0.034 3.966 9 C -0.527 4.527 10 H 0.063 0.937 11 C -0.154 4.154 12 N -0.533 5.533 13 Si 0.759 3.241 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.246 4.246 18 C -0.221 4.221 19 C -0.063 4.063 20 C -0.197 4.197 21 C -0.194 4.194 22 C -0.199 4.199 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.367 -2.692 -12.947 13.434 hybrid contribution 1.312 0.597 0.931 1.716 sum -1.055 -2.095 -12.016 12.242 Atomic orbital electron populations 1.21693 0.94543 1.01420 1.00977 1.21060 0.96580 0.98262 0.92732 0.92947 1.22250 0.96492 0.96878 0.90937 1.61861 1.55443 1.05416 1.01888 1.22646 0.96055 0.93055 0.99757 1.21809 1.01892 0.91532 0.88445 1.19045 0.89987 0.94135 0.93458 1.20620 0.91825 0.97674 1.42561 0.93673 1.25360 0.96663 0.99276 0.94143 1.69864 1.01700 1.33690 1.48058 0.86021 0.77251 0.81957 0.78876 1.20239 1.20943 1.19425 1.22959 1.08793 0.97338 0.95495 1.22703 0.95322 1.02544 1.01498 1.20534 0.95109 0.95984 0.94671 1.21919 1.01371 0.94943 1.01461 1.21872 1.01449 0.99776 0.96268 1.21913 0.95169 1.01286 1.01503 0.93926 0.91876 0.92920 0.96856 0.92041 0.94617 0.90156 0.96619 0.95805 0.90500 0.93145 0.90831 0.91328 0.91221 0.90217 0.92034 0.91769 0.93700 0.93205 0.91703 0.91854 0.93825 0.91462 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.31 71.98 0.60 -3.08 16 2 C -0.07 -2.01 1.75 -10.79 -0.02 -2.03 16 3 H 0.05 1.72 6.42 -2.39 -0.02 1.70 16 4 C 0.06 2.25 3.65 86.30 0.31 2.57 16 5 N -0.52 -22.62 4.19 -922.46 -3.86 -26.48 16 6 C 0.03 1.51 7.80 127.69 1.00 2.50 16 7 C 0.09 4.33 4.71 86.30 0.41 4.74 16 8 C 0.03 1.71 2.04 -52.93 -0.11 1.60 16 9 C -0.49 -26.06 7.06 25.60 0.18 -25.88 16 10 H 0.05 2.45 7.82 -2.91 -0.02 2.43 16 11 C 0.05 2.35 3.10 84.66 0.26 2.62 16 12 N -0.89 -47.61 8.53 21.45 0.18 -47.43 16 13 Si 0.93 41.88 29.29 68.60 2.01 43.89 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 C -0.21 -9.46 9.93 30.62 0.30 -9.16 16 18 C -0.18 -8.11 9.96 30.62 0.30 -7.81 16 19 C -0.06 -1.48 0.57 -52.18 -0.03 -1.51 16 20 C -0.14 -3.05 7.77 71.98 0.56 -2.49 16 21 C -0.14 -2.69 8.13 71.98 0.59 -2.11 16 22 C -0.14 -3.40 8.13 71.98 0.59 -2.81 16 23 H 0.04 1.43 7.86 -2.39 -0.02 1.41 16 24 H 0.06 1.51 6.22 -2.39 -0.01 1.50 16 25 H 0.05 1.43 6.66 -2.39 -0.02 1.42 16 26 H 0.01 0.51 6.12 -2.38 -0.01 0.50 16 27 H 0.06 2.16 6.28 -2.39 -0.01 2.15 16 28 H 0.04 1.47 6.30 -2.39 -0.02 1.46 16 29 H 0.08 4.07 4.23 -2.39 -0.01 4.06 16 30 H 0.02 0.76 6.34 -2.39 -0.02 0.75 16 31 H 0.02 1.08 7.67 -2.39 -0.02 1.06 16 32 H 0.08 4.12 5.14 -2.39 -0.01 4.10 16 33 H 0.26 13.38 8.32 -92.71 -0.77 12.61 16 34 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 35 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.06 1.29 6.52 -2.39 -0.02 1.28 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.04 1.08 6.53 -2.39 -0.02 1.07 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.19 6.34 -2.39 -0.02 1.17 16 44 H 0.04 1.18 6.33 -2.39 -0.02 1.16 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -53.68 330.59 4.20 -49.49 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.93 Total: 23.38 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 4.94 Total: -42.85 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -3.68 Total: -73.91 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.01 Total: 43.89 kcal Total: -53.68 4.20 -49.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399668328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.456 kcal (2) G-P(sol) polarization free energy of solvation -53.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds