Wall clock time and date at job start Mon Mar 30 2020 07:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 C 1.52993 * 109.47243 * 119.99813 * 2 1 3 5 5 H 1.09006 * 109.47128 * 54.29399 * 4 2 1 6 6 C 1.53004 * 109.47415 * 294.29606 * 4 2 1 7 7 C 1.52993 * 109.47415 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47375 * 60.00113 * 7 6 4 9 9 C 1.53004 * 109.46762 * 299.99893 * 8 7 6 10 10 C 1.52995 * 109.47375 * 174.29720 * 4 2 1 11 11 H 1.08998 * 109.47412 * 60.00039 * 10 4 2 12 12 N 1.46902 * 109.46950 * 299.99961 * 10 4 2 13 13 C 1.46902 * 110.99787 * 154.99989 * 12 10 4 14 14 H 1.08999 * 109.47589 * 35.00171 * 13 12 10 15 15 C 1.52999 * 109.47150 * 274.99832 * 13 12 10 16 16 C 1.53006 * 109.46871 * 155.00160 * 13 12 10 17 17 C 1.50698 * 109.46849 * 294.99676 * 16 13 12 18 18 H 1.08000 * 120.00375 * 0.02562 * 17 16 13 19 19 C 1.37885 * 119.99847 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00138 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99764 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47134 * 90.00215 * 21 19 17 23 23 H 1.48501 * 109.47239 * 209.99603 * 21 19 17 24 24 H 1.48500 * 109.47470 * 330.00090 * 21 19 17 25 25 H 1.08996 * 109.47658 * 305.12875 * 1 2 3 26 26 H 1.09003 * 109.47223 * 65.12713 * 1 2 3 27 27 H 1.08998 * 109.46800 * 185.12406 * 1 2 3 28 28 H 1.09001 * 109.47458 * 239.99971 * 2 1 3 29 29 H 1.08998 * 109.47090 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46895 * 299.99995 * 3 2 1 31 31 H 1.09001 * 109.47097 * 59.99750 * 3 2 1 32 32 H 1.09001 * 109.46881 * 300.00470 * 6 4 2 33 33 H 1.09007 * 109.46956 * 59.99300 * 6 4 2 34 34 H 1.09001 * 109.47163 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.47128 * 299.99792 * 7 6 4 36 36 H 1.08998 * 109.47412 * 60.00039 * 8 7 6 37 37 H 1.08998 * 109.47474 * 179.97438 * 8 7 6 38 38 H 1.09007 * 109.46965 * 179.97438 * 9 8 7 39 39 H 1.08993 * 109.47354 * 299.99750 * 9 8 7 40 40 H 1.00906 * 111.00091 * 278.95187 * 12 10 4 41 41 H 1.08995 * 109.46911 * 60.00217 * 15 13 12 42 42 H 1.08998 * 109.46984 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47065 * 300.00163 * 15 13 12 44 44 H 1.08999 * 109.46993 * 54.99775 * 16 13 12 45 45 H 1.09003 * 109.47107 * 175.00016 * 16 13 12 46 46 H 0.96997 * 119.99913 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5956 -1.7152 1.3018 6 6 1.6505 0.0781 2.4944 7 6 2.1610 -0.6428 3.7435 8 6 3.6843 -0.7675 3.6736 9 6 4.0738 -1.5669 2.4285 10 6 3.5632 -0.8465 1.1796 11 1 4.0076 0.1474 1.1271 12 7 3.9373 -1.6140 -0.0158 13 6 5.2984 -1.2764 -0.4535 14 1 5.9212 -1.0758 0.4183 15 6 5.2539 -0.0341 -1.3454 16 6 5.8862 -2.4490 -1.2413 17 6 6.0441 -3.6381 -0.3291 18 1 5.7538 -3.5650 0.7086 19 6 6.5582 -4.8198 -0.8196 20 7 6.6956 -5.8577 -0.0237 21 14 7.0596 -4.9464 -2.6146 22 1 8.4849 -4.5551 -2.7592 23 1 6.8806 -6.3448 -3.0811 24 1 6.2122 -4.0400 -3.4304 25 1 -0.3634 0.5913 0.8404 26 1 -0.3634 0.4323 -0.9324 27 1 -0.3633 -1.0236 0.0918 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0947 1.0721 2.4417 33 1 0.5652 0.1675 2.5439 34 1 1.8831 -0.0736 4.6306 35 1 1.7170 -1.6369 3.7963 36 1 4.1283 0.2265 3.6209 37 1 4.0481 -1.2807 4.5638 38 1 5.1591 -1.6554 2.3784 39 1 3.6299 -2.5609 2.4813 40 1 3.8454 -2.6055 0.1476 41 1 4.8352 0.8012 -0.7842 42 1 6.2638 0.2161 -1.6704 43 1 4.6312 -0.2347 -2.2172 44 1 5.2171 -2.7070 -2.0621 45 1 6.8599 -2.1662 -1.6414 46 1 7.0569 -6.6890 -0.3689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411518805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:36 Heat of formation + Delta-G solvation = -46.387746 kcal Electronic energy + Delta-G solvation = -20455.870910 eV Core-core repulsion = 17764.359515 eV Total energy + Delta-G solvation = -2691.511395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46501 -36.01044 -34.66215 -32.61108 -31.05818 -29.20333 -27.92905 -27.16581 -26.75696 -23.21281 -22.82007 -21.29078 -20.09016 -19.41373 -18.49787 -16.75547 -15.53375 -15.03522 -14.70019 -14.30207 -14.20187 -14.03939 -13.46299 -13.29664 -12.88378 -12.64630 -12.47512 -12.37075 -11.93417 -11.78533 -11.73871 -11.52343 -11.32853 -11.10298 -11.06386 -10.91407 -10.68052 -10.52062 -10.49407 -10.38127 -9.95929 -9.85805 -9.71802 -9.60562 -9.33422 -9.17351 -8.54407 -7.52694 -6.05388 -4.03234 3.31288 3.39236 3.44210 4.45659 4.75633 4.88167 4.98408 5.18271 5.26124 5.30449 5.37722 5.39496 5.56695 5.65457 5.71538 5.77651 5.81983 5.82712 5.89877 5.92609 5.95323 6.05188 6.11731 6.14144 6.18221 6.21669 6.25737 6.32525 6.34012 6.42085 6.51953 6.54409 6.61260 6.69391 6.75640 6.83335 6.84831 6.87794 7.22285 7.36352 7.78400 8.01817 8.33274 8.51087 8.97599 9.57886 11.07551 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.006203 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.302968 B = 4513.013801 C = 5065.259239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.067 4.067 5 H 0.066 0.934 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.114 4.114 9 C -0.149 4.149 10 C 0.095 3.905 11 H 0.069 0.931 12 N -0.677 5.677 13 C 0.098 3.902 14 H 0.033 0.967 15 C -0.138 4.138 16 C -0.017 4.017 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.069 3.931 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.356 0.644 41 H 0.041 0.959 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.024 0.976 45 H 0.014 0.986 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 13.122 3.341 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.086 4.086 5 H 0.084 0.916 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.152 4.152 9 C -0.188 4.188 10 C -0.016 4.016 11 H 0.087 0.913 12 N -0.309 5.309 13 C -0.012 4.012 14 H 0.051 0.949 15 C -0.196 4.196 16 C -0.055 4.055 17 C -0.559 4.559 18 H 0.089 0.911 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.707 3.293 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.178 0.822 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.032 0.968 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.149 13.356 2.880 17.020 hybrid contribution 0.960 -0.752 -0.131 1.226 sum -9.190 12.604 2.749 15.839 Atomic orbital electron populations 1.21892 0.96560 1.01209 1.00733 1.21010 0.93969 0.95790 0.99557 1.21940 1.01446 0.96530 1.00471 1.21095 0.95322 0.98717 0.93454 0.91579 1.21685 1.00097 0.99203 0.94358 1.21542 0.96061 1.00538 0.97511 1.21469 0.95617 1.00043 0.98081 1.22270 1.01565 0.99596 0.95350 1.21552 0.94355 0.97289 0.88402 0.91273 1.60652 1.25549 1.12503 1.32206 1.21341 0.88320 0.95129 0.96402 0.94873 1.21880 1.00150 0.97559 1.00036 1.19765 0.95478 0.93655 0.96568 1.21105 1.42475 0.94808 0.97475 0.91098 1.25006 0.95101 0.95691 0.97482 1.69915 1.45986 1.02659 1.35572 0.86782 0.79221 0.77171 0.86113 1.20503 1.21539 1.18889 0.93302 0.93450 0.93035 0.89266 0.92357 0.93704 0.93286 0.91975 0.92263 0.92765 0.92213 0.92561 0.92608 0.91719 0.91791 0.82219 0.93991 0.93619 0.92756 0.95745 0.96783 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.84 37.16 0.33 -1.31 16 2 C -0.08 -1.08 2.61 -90.62 -0.24 -1.32 16 3 C -0.15 -1.73 8.45 37.16 0.31 -1.42 16 4 C -0.07 -0.89 1.67 -90.62 -0.15 -1.04 16 5 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.12 -1.33 4.46 -26.73 -0.12 -1.45 16 7 C -0.12 -1.39 5.92 -26.74 -0.16 -1.55 16 8 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 9 C -0.15 -2.36 5.16 -26.76 -0.14 -2.50 16 10 C 0.09 1.45 1.49 -67.74 -0.10 1.35 16 11 H 0.07 1.07 5.58 -51.93 -0.29 0.78 16 12 N -0.68 -12.26 5.19 -99.77 -0.52 -12.78 16 13 C 0.10 1.91 2.40 -67.71 -0.16 1.75 16 14 H 0.03 0.69 7.11 -51.93 -0.37 0.32 16 15 C -0.14 -2.32 9.40 37.16 0.35 -1.97 16 16 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 17 C -0.52 -14.26 8.67 -34.44 -0.30 -14.55 16 18 H 0.07 2.07 7.73 -52.49 -0.41 1.66 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 21 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 H 0.05 0.50 6.84 -51.93 -0.36 0.14 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.34 7.43 -51.93 -0.39 0.95 16 29 H 0.06 0.75 5.04 -51.93 -0.26 0.48 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 32 H 0.06 0.70 6.34 -51.93 -0.33 0.38 16 33 H 0.06 0.63 6.70 -51.92 -0.35 0.28 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.17 7.42 -51.93 -0.39 0.78 16 39 H 0.06 1.10 8.13 -51.93 -0.42 0.67 16 40 H 0.36 7.36 6.95 -39.29 -0.27 7.09 16 41 H 0.04 0.63 5.88 -51.93 -0.31 0.33 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 45 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -27.93 333.47 -8.74 -36.67 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.62 Total: 4.96 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -0.73 Total: -24.29 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.26 Total: -39.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.93 -8.74 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411518805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.715 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds