Wall clock time and date at job start Mon Mar 30 2020 07:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47011 * 2 1 4 4 C 1.52999 * 109.47051 * 120.00041 * 2 1 3 5 5 H 1.09006 * 109.46761 * 185.38497 * 4 2 1 6 6 C 1.52997 * 109.47358 * 305.38251 * 4 2 1 7 7 C 1.52999 * 109.47358 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47077 * 300.00376 * 7 6 4 9 9 C 1.52997 * 109.47334 * 59.99609 * 8 7 6 10 10 C 1.52998 * 109.47077 * 65.38627 * 4 2 1 11 11 H 1.08996 * 109.47195 * 299.99771 * 10 4 2 12 12 N 1.46900 * 109.47028 * 59.99997 * 10 4 2 13 13 C 1.46903 * 110.99720 * 220.45426 * 12 10 4 14 14 H 1.09006 * 109.47145 * 34.20511 * 13 12 10 15 15 C 1.52994 * 109.47389 * 274.20334 * 13 12 10 16 16 C 1.53005 * 109.47053 * 154.20101 * 13 12 10 17 17 C 1.50697 * 109.46929 * 295.86627 * 16 13 12 18 18 H 1.08000 * 120.00701 * 4.46679 * 17 16 13 19 19 C 1.37886 * 119.99835 * 184.47308 * 17 16 13 20 20 N 1.31508 * 119.99645 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47049 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47182 * 119.99630 * 21 19 17 24 24 H 1.48495 * 109.46794 * 239.99399 * 21 19 17 25 25 H 1.08997 * 109.47349 * 300.00039 * 1 2 3 26 26 H 1.09001 * 109.47482 * 59.99950 * 1 2 3 27 27 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47157 * 240.00473 * 2 1 3 29 29 H 1.09005 * 109.47026 * 62.71705 * 3 2 1 30 30 H 1.09002 * 109.46985 * 182.71125 * 3 2 1 31 31 H 1.08995 * 109.47289 * 302.71364 * 3 2 1 32 32 H 1.09006 * 109.46983 * 60.00383 * 6 4 2 33 33 H 1.08999 * 109.47097 * 300.00433 * 6 4 2 34 34 H 1.08998 * 109.47219 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46921 * 60.00315 * 7 6 4 36 36 H 1.09000 * 109.47110 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.47219 * 299.99590 * 8 7 6 38 38 H 1.09008 * 109.46838 * 60.00350 * 9 8 7 39 39 H 1.08999 * 109.47097 * 179.97438 * 9 8 7 40 40 H 1.00897 * 111.00187 * 96.51062 * 12 10 4 41 41 H 1.09002 * 109.47534 * 66.17538 * 15 13 12 42 42 H 1.08998 * 109.47544 * 186.17690 * 15 13 12 43 43 H 1.08999 * 109.47370 * 306.17607 * 15 13 12 44 44 H 1.08997 * 109.46752 * 55.86138 * 16 13 12 45 45 H 1.09002 * 109.47046 * 175.86554 * 16 13 12 46 46 H 0.97001 * 119.99538 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1257 -0.6385 1.2987 6 6 1.4225 -0.0824 2.4948 7 6 1.9320 -0.8041 3.7440 8 6 1.5350 -2.2802 3.6778 9 6 2.1525 -2.9190 2.4322 10 6 1.6435 -2.1975 1.1833 11 1 0.5578 -2.2803 1.1338 12 7 2.2365 -2.8108 -0.0126 13 6 1.2888 -3.7291 -0.6581 14 1 0.2751 -3.3452 -0.5428 15 6 1.3892 -5.1085 -0.0041 16 6 1.6240 -3.8446 -2.1465 17 6 1.4267 -2.5066 -2.8112 18 1 1.1655 -1.6424 -2.2185 19 6 1.5797 -2.3857 -4.1762 20 7 1.8982 -3.4379 -4.8978 21 14 1.3344 -0.7273 -5.0002 22 1 0.9834 0.2878 -3.9748 23 1 2.5884 -0.3252 -5.6864 24 1 0.2359 -0.8263 -5.9945 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.7169 1.9421 0.9134 30 1 3.1289 1.4429 -0.0486 31 1 1.6375 1.9702 -0.8646 32 1 0.3367 -0.1652 2.4453 33 1 1.7049 0.9693 2.5417 34 1 1.4917 -0.3493 4.6313 35 1 3.0177 -0.7217 3.7937 36 1 1.8976 -2.7942 4.5679 37 1 0.4492 -2.3626 3.6281 38 1 3.2383 -2.8367 2.4820 39 1 1.8700 -3.9707 2.3853 40 1 3.0997 -3.2820 0.2129 41 1 1.0452 -5.0471 1.0284 42 1 0.7681 -5.8168 -0.5524 43 1 2.4259 -5.4446 -0.0222 44 1 2.6615 -4.1581 -2.2619 45 1 0.9680 -4.5812 -2.6106 46 1 2.0061 -3.3528 -5.8581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411518834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:40 Heat of formation + Delta-G solvation = -57.814972 kcal Electronic energy + Delta-G solvation = -20703.285856 eV Core-core repulsion = 18011.278939 eV Total energy + Delta-G solvation = -2692.006917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61480 -37.42783 -35.73680 -34.63073 -32.29308 -30.25542 -29.15953 -28.16270 -27.94330 -24.99802 -24.17529 -22.56575 -21.71001 -20.85765 -19.58232 -18.28609 -16.87029 -16.43031 -16.07539 -15.56765 -15.34554 -15.16858 -14.70708 -14.41009 -14.14164 -14.12818 -13.96041 -13.47747 -13.29889 -13.21315 -12.99529 -12.86365 -12.65464 -12.53665 -12.36309 -12.21336 -12.10812 -11.82744 -11.67747 -11.56539 -11.47256 -11.30046 -11.13085 -10.94988 -10.69583 -10.46669 -10.40779 -8.81222 -8.05280 -6.07349 1.39386 1.41213 1.53635 2.49291 3.27645 3.47888 3.81833 3.96808 4.14402 4.24755 4.28093 4.37501 4.41525 4.48947 4.52726 4.57883 4.65809 4.66043 4.71629 4.81319 4.89404 4.93150 4.99336 5.02650 5.10823 5.14179 5.19955 5.24840 5.28787 5.30212 5.34310 5.36115 5.38375 5.45893 5.55158 5.57572 5.66105 5.75386 5.81878 5.88101 6.03062 6.45710 6.65281 6.87416 7.09907 7.57809 9.07754 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.007790 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.722392 B = 3593.598787 C = 4675.342929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.056 4.056 5 H 0.057 0.943 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.111 4.111 9 C -0.140 4.140 10 C 0.096 3.904 11 H 0.058 0.942 12 N -0.671 5.671 13 C 0.106 3.894 14 H 0.053 0.947 15 C -0.170 4.170 16 C 0.037 3.963 17 C -0.485 4.485 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.945 5.945 21 Si 0.945 3.055 22 H -0.261 1.261 23 H -0.287 1.287 24 H -0.286 1.286 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.333 0.667 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.052 0.948 44 H -0.015 1.015 45 H -0.013 1.013 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 5.620 18.689 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.076 4.076 5 H 0.076 0.924 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.179 4.179 10 C -0.014 4.014 11 H 0.076 0.924 12 N -0.300 5.300 13 C -0.004 4.004 14 H 0.071 0.929 15 C -0.229 4.229 16 C -0.001 4.001 17 C -0.524 4.524 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.589 5.589 21 Si 0.772 3.228 22 H -0.185 1.185 23 H -0.213 1.213 24 H -0.212 1.212 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.004 0.996 45 H 0.006 0.994 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.038 6.117 18.098 19.132 hybrid contribution 0.042 -0.400 -0.769 0.868 sum -0.996 5.717 17.329 18.275 Atomic orbital electron populations 1.21804 0.96155 1.00678 1.00748 1.21071 0.95289 0.95690 0.99339 1.21842 1.00498 0.96165 1.01380 1.21004 0.99241 0.93510 0.93797 0.92429 1.21688 1.00470 0.99504 0.93502 1.21519 1.00974 0.95041 0.97679 1.21462 1.00407 0.96056 0.97033 1.22256 1.00787 0.99333 0.95532 1.21652 0.97820 0.94232 0.87655 0.92364 1.60392 1.06079 1.36640 1.26935 1.21461 0.94641 0.90019 0.94239 0.92890 1.22516 1.01587 0.98273 1.00533 1.19020 0.94152 0.95437 0.91453 1.21709 1.42742 0.96311 0.91618 0.90945 1.25821 0.96497 0.99284 0.98775 1.70112 1.51860 1.30888 1.06000 0.85679 0.77244 0.81300 0.78591 1.18509 1.21297 1.21208 0.91204 0.94865 0.94098 0.91922 0.91188 0.93258 0.94255 0.91867 0.91173 0.90923 0.92135 0.91175 0.92300 0.91865 0.92242 0.84839 0.91607 0.93284 0.92853 0.99624 0.99424 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.45 71.98 0.61 -3.60 16 2 C -0.10 -3.04 2.61 -10.79 -0.03 -3.07 16 3 C -0.14 -3.91 9.02 71.98 0.65 -3.26 16 4 C -0.06 -1.51 1.68 -10.80 -0.02 -1.53 16 5 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 6 C -0.11 -2.37 4.47 30.59 0.14 -2.23 16 7 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 8 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 9 C -0.14 -3.18 5.04 30.58 0.15 -3.02 16 10 C 0.10 2.73 1.72 44.90 0.08 2.80 16 11 H 0.06 1.79 5.62 -2.39 -0.01 1.78 16 12 N -0.67 -23.77 4.91 -469.56 -2.31 -26.08 16 13 C 0.11 4.23 2.51 44.91 0.11 4.34 16 14 H 0.05 2.20 7.33 -2.38 -0.02 2.18 16 15 C -0.17 -5.56 8.94 71.98 0.64 -4.92 16 16 C 0.04 1.93 4.66 29.85 0.14 2.07 16 17 C -0.49 -27.45 8.82 25.60 0.23 -27.22 16 18 H 0.07 3.98 5.80 -2.91 -0.02 3.96 16 19 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 20 N -0.95 -59.28 13.29 21.45 0.28 -59.00 16 21 Si 0.95 46.34 29.54 68.60 2.03 48.36 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H 0.07 1.74 6.34 -2.39 -0.02 1.73 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.36 6.58 -2.39 -0.02 1.34 16 28 H 0.06 2.60 5.51 -2.39 -0.01 2.59 16 29 H 0.07 1.58 6.46 -2.38 -0.02 1.56 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.33 6.34 -2.38 -0.02 1.32 16 33 H 0.07 1.35 6.52 -2.39 -0.02 1.33 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 38 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 39 H 0.06 1.36 6.19 -2.39 -0.01 1.34 16 40 H 0.33 11.24 7.90 -89.70 -0.71 10.54 16 41 H 0.07 1.80 6.45 -2.39 -0.02 1.79 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.69 8.01 -2.39 -0.02 1.67 16 44 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -63.36 335.34 3.75 -59.60 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.22 Total: 20.53 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.53 Total: -43.42 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.02 Total: -85.08 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -63.36 3.75 -59.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411518834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.789 kcal (2) G-P(sol) polarization free energy of solvation -63.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds