Wall clock time and date at job start Mon Mar 30 2020 07:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47486 * 2 1 4 4 C 1.53010 * 109.46831 * 119.99553 * 2 1 3 5 5 H 1.09002 * 109.47025 * 300.00442 * 4 2 1 6 6 C 1.52999 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.53002 * 109.47028 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46781 * 60.00209 * 7 6 4 9 9 C 1.53003 * 109.47510 * 299.99739 * 8 7 6 10 10 C 1.52998 * 109.46916 * 59.99786 * 9 8 7 11 11 H 1.08995 * 109.47230 * 179.97438 * 10 9 8 12 12 N 1.46908 * 109.46930 * 60.00569 * 10 9 8 13 13 C 1.46902 * 111.00135 * 103.29301 * 12 10 9 14 14 H 1.09005 * 109.46734 * 37.71401 * 13 12 10 15 15 C 1.53004 * 109.47249 * 277.71408 * 13 12 10 16 16 C 1.52995 * 109.46977 * 157.70818 * 13 12 10 17 17 C 1.50699 * 109.47422 * 295.00411 * 16 13 12 18 18 H 1.07998 * 120.00176 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99948 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99749 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47252 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47299 * 119.99747 * 21 19 17 24 24 H 1.48503 * 109.47003 * 239.99586 * 21 19 17 25 25 H 1.09001 * 109.46355 * 60.00382 * 1 2 3 26 26 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46923 * 300.00756 * 1 2 3 28 28 H 1.08997 * 109.47359 * 239.98951 * 2 1 3 29 29 H 1.08999 * 109.47319 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46500 * 299.99229 * 3 2 1 31 31 H 1.09002 * 109.46993 * 59.99176 * 3 2 1 32 32 H 1.09000 * 109.46885 * 59.99770 * 6 4 2 33 33 H 1.09004 * 109.46832 * 300.00113 * 6 4 2 34 34 H 1.08993 * 109.47027 * 300.00390 * 7 6 4 35 35 H 1.08999 * 109.46792 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47012 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.47678 * 60.00222 * 8 7 6 38 38 H 1.09004 * 109.46634 * 300.00350 * 9 8 7 39 39 H 1.09000 * 109.47227 * 180.02562 * 9 8 7 40 40 H 1.00896 * 110.99406 * 339.34226 * 12 10 9 41 41 H 1.09002 * 109.46763 * 185.79111 * 15 13 12 42 42 H 1.08999 * 109.46768 * 305.78619 * 15 13 12 43 43 H 1.09000 * 109.47149 * 65.78792 * 15 13 12 44 44 H 1.09005 * 109.47021 * 55.00351 * 16 13 12 45 45 H 1.09007 * 109.46961 * 175.00046 * 16 13 12 46 46 H 0.97002 * 119.99742 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5700 -0.7218 1.2492 7 6 4.0799 -1.4425 2.4988 8 6 3.5693 -2.8847 2.4998 9 6 2.0393 -2.8842 2.5000 10 6 1.5294 -2.1635 1.2504 11 1 0.4394 -2.1635 1.2503 12 7 2.0186 -2.8570 0.0513 13 6 0.9553 -3.6654 -0.5600 14 1 0.0061 -3.1348 -0.4837 15 6 0.8502 -5.0060 0.1700 16 6 1.2849 -3.9115 -2.0336 17 6 1.2675 -2.6012 -2.7779 18 1 1.0432 -1.6847 -2.2525 19 6 1.5368 -2.5727 -4.1298 20 7 1.8094 -3.6888 -4.7697 21 14 1.5158 -0.9484 -5.0522 22 1 1.1849 0.1513 -4.1107 23 1 2.8520 -0.7022 -5.6515 24 1 0.4934 -1.0032 -6.1278 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5140 -0.8898 29 1 3.1301 1.4424 0.0005 30 1 1.6769 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.9337 0.3057 1.2488 33 1 3.9330 -1.2360 0.3592 34 1 3.7168 -0.9279 3.3885 35 1 5.1699 -1.4425 2.4989 36 1 3.9321 -3.3980 3.3903 37 1 3.9323 -3.3993 1.6102 38 1 1.6763 -2.3696 3.3898 39 1 1.6756 -3.9117 2.5011 40 1 2.8257 -3.4234 0.2653 41 1 0.1341 -5.6455 -0.3461 42 1 1.8266 -5.4903 0.1825 43 1 0.5152 -4.8372 1.1934 44 1 2.2742 -4.3620 -2.1143 45 1 0.5432 -4.5841 -2.4645 46 1 1.9985 -3.6688 -5.7209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411518836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:49 Heat of formation + Delta-G solvation = -40.631717 kcal Electronic energy + Delta-G solvation = -20894.638000 eV Core-core repulsion = 18203.376205 eV Total energy + Delta-G solvation = -2691.261795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52766 -35.62952 -34.62172 -32.50487 -30.68357 -29.34510 -27.29761 -27.12095 -26.67103 -22.99541 -22.62970 -21.84455 -19.83887 -19.38776 -18.61460 -16.15736 -15.68541 -14.95164 -14.51350 -14.29025 -13.86484 -13.64477 -13.28081 -13.12061 -12.92253 -12.74309 -12.37901 -12.00604 -11.85701 -11.77393 -11.62948 -11.34637 -11.25508 -10.93342 -10.85943 -10.77453 -10.69344 -10.47505 -10.35697 -10.22713 -9.98166 -9.80653 -9.66949 -9.48219 -9.02323 -8.80153 -8.19672 -7.39811 -5.81876 -3.78188 3.41163 3.49050 3.53672 4.61556 4.84209 4.95865 5.01893 5.13598 5.43768 5.45269 5.55273 5.56274 5.67011 5.73195 5.74836 5.76955 5.83654 5.93978 5.96358 6.01383 6.03856 6.08878 6.15997 6.20864 6.26199 6.31929 6.37376 6.40841 6.42147 6.52102 6.55762 6.60109 6.72276 6.80207 6.84604 6.94909 7.13282 7.26375 7.69548 7.80570 8.15211 8.17417 8.31493 8.68866 9.28738 9.82741 11.30557 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.008440 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.063525 B = 3316.916693 C = 4131.940041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.059 4.059 5 H 0.052 0.948 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.118 4.118 9 C -0.145 4.145 10 C 0.089 3.911 11 H 0.067 0.933 12 N -0.652 5.652 13 C 0.090 3.910 14 H 0.063 0.937 15 C -0.181 4.181 16 C 0.033 3.967 17 C -0.481 4.481 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.905 5.905 21 Si 0.883 3.117 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.290 1.290 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.331 0.669 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.014 0.986 45 H 0.014 0.986 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 4.272 14.740 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.079 4.079 5 H 0.070 0.930 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.155 4.155 9 C -0.184 4.184 10 C -0.021 4.021 11 H 0.085 0.915 12 N -0.283 5.283 13 C -0.020 4.020 14 H 0.081 0.919 15 C -0.240 4.240 16 C -0.005 4.005 17 C -0.520 4.520 18 H 0.084 0.916 19 C -0.150 4.150 20 N -0.547 5.547 21 Si 0.712 3.288 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.216 1.216 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.102 4.759 14.145 14.965 hybrid contribution -0.048 0.047 0.051 0.084 sum 1.053 4.806 14.196 15.024 Atomic orbital electron populations 1.21804 0.96339 1.01626 0.99996 1.21137 0.94943 0.94616 1.00342 1.21902 1.00774 0.97260 1.00438 1.21073 0.95005 0.94846 0.96942 0.92973 1.21587 0.95741 0.99613 0.98207 1.21505 0.99541 0.95719 0.98540 1.21496 0.95673 0.97067 1.01306 1.22229 0.96142 1.00582 0.99451 1.21642 0.98319 0.93835 0.88349 0.91496 1.60620 1.07823 1.34084 1.25821 1.21881 0.93596 0.89359 0.97127 0.91881 1.22664 1.01266 1.00667 0.99428 1.19110 0.96572 0.97076 0.87707 1.21271 1.44426 0.93894 0.92398 0.91617 1.25001 0.96396 0.95615 0.98013 1.69979 1.49859 1.25937 1.08920 0.86673 0.77231 0.85000 0.79935 1.19636 1.21474 1.21625 0.93362 0.92284 0.94442 0.87606 0.92874 0.93416 0.93976 0.92762 0.90329 0.92920 0.92724 0.92893 0.91551 0.92448 0.92278 0.84842 0.92796 0.93381 0.94350 0.96745 0.96807 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.84 37.16 0.33 -1.90 16 2 C -0.09 -1.49 2.35 -90.61 -0.21 -1.70 16 3 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 4 C -0.06 -0.85 1.60 -90.62 -0.14 -0.99 16 5 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.11 -1.56 4.69 -26.73 -0.13 -1.68 16 7 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 8 C -0.12 -1.41 5.72 -26.73 -0.15 -1.56 16 9 C -0.15 -1.83 5.45 -26.73 -0.15 -1.98 16 10 C 0.09 1.31 1.84 -67.71 -0.12 1.19 16 11 H 0.07 1.04 5.52 -51.93 -0.29 0.75 16 12 N -0.65 -11.35 4.26 -99.73 -0.43 -11.77 16 13 C 0.09 1.75 2.46 -67.71 -0.17 1.58 16 14 H 0.06 1.27 6.68 -51.93 -0.35 0.92 16 15 C -0.18 -3.01 8.85 37.16 0.33 -2.69 16 16 C 0.03 0.82 4.65 -27.89 -0.13 0.69 16 17 C -0.48 -13.11 8.84 -34.44 -0.30 -13.41 16 18 H 0.07 1.75 6.19 -52.49 -0.32 1.43 16 19 C 0.05 1.39 5.46 -17.82 -0.10 1.29 16 20 N -0.91 -27.41 13.29 55.43 0.74 -26.67 16 21 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.99 5.67 -51.93 -0.29 0.70 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 2.13 6.05 -51.93 -0.31 1.81 16 29 H 0.05 0.73 6.43 -51.93 -0.33 0.40 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 33 H 0.08 1.24 7.60 -51.93 -0.39 0.85 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.86 6.26 -51.93 -0.33 0.54 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.75 6.37 -51.93 -0.33 0.42 16 40 H 0.33 5.63 5.87 -39.29 -0.23 5.40 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.78 8.04 -51.93 -0.42 0.36 16 43 H 0.04 0.56 6.63 -51.93 -0.34 0.22 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -28.30 333.70 -8.94 -37.25 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.49 Total: 3.61 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -0.78 Total: -24.48 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.31 Total: -38.44 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.30 -8.94 -37.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411518836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.383 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds