Wall clock time and date at job start Mon Mar 30 2020 07:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 C 1.52998 * 109.47029 * 119.99564 * 2 1 3 5 5 C 1.53004 * 109.47410 * 64.99626 * 4 2 1 6 6 H 1.08999 * 109.47268 * 305.00731 * 5 4 2 7 7 C 1.53009 * 109.46678 * 64.99931 * 5 4 2 8 8 C 1.52993 * 109.47435 * 184.99992 * 5 4 2 9 9 N 1.46905 * 109.47039 * 175.00361 * 8 5 4 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 5 11 11 H 1.09001 * 110.01802 * 325.69843 * 10 9 8 12 12 C 1.53871 * 110.03424 * 87.08970 * 10 9 8 13 13 C 1.54271 * 106.59784 * 119.28420 * 12 10 9 14 14 C 1.54884 * 104.19300 * 23.61032 * 13 12 10 15 15 H 1.09000 * 110.76108 * 80.55979 * 14 13 12 16 16 C 1.50707 * 110.75582 * 203.74506 * 14 13 12 17 17 H 1.07992 * 120.00308 * 118.54819 * 16 14 13 18 18 C 1.37878 * 119.99689 * 298.54814 * 16 14 13 19 19 N 1.31512 * 120.00194 * 180.02562 * 18 16 14 20 20 Si 1.86808 * 120.00184 * 359.97438 * 18 16 14 21 21 H 1.48502 * 109.46860 * 89.99969 * 20 18 16 22 22 H 1.48493 * 109.47307 * 210.00037 * 20 18 16 23 23 H 1.48500 * 109.46992 * 330.00353 * 20 18 16 24 24 C 1.54269 * 110.03107 * 204.31296 * 10 9 8 25 25 H 1.09000 * 109.46606 * 60.00421 * 1 2 3 26 26 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47327 * 300.00604 * 1 2 3 28 28 H 1.09001 * 109.47327 * 239.99396 * 2 1 3 29 29 H 1.09006 * 109.47076 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47057 * 299.99303 * 3 2 1 31 31 H 1.08991 * 109.47952 * 59.99844 * 3 2 1 32 32 H 1.09001 * 109.47222 * 305.00037 * 4 2 1 33 33 H 1.09003 * 109.47490 * 185.00083 * 4 2 1 34 34 H 1.08995 * 109.47462 * 300.00645 * 7 5 4 35 35 H 1.08999 * 109.46618 * 60.00401 * 7 5 4 36 36 H 1.08995 * 109.46725 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.47393 * 55.00642 * 8 5 4 38 38 H 1.08998 * 109.47408 * 295.00288 * 8 5 4 39 39 H 1.00901 * 110.99869 * 56.04956 * 9 8 5 40 40 H 1.08997 * 110.03764 * 238.56742 * 12 10 9 41 41 H 1.09005 * 110.03171 * 0.02562 * 12 10 9 42 42 H 1.08998 * 110.48421 * 142.29104 * 13 12 10 43 43 H 1.09003 * 110.48473 * 264.93469 * 13 12 10 44 44 H 0.96999 * 120.00380 * 180.02562 * 19 18 16 45 45 H 1.09003 * 110.48235 * 335.77684 * 24 10 9 46 46 H 1.08994 * 110.48975 * 98.42471 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1882 6 1 0.5562 -2.2706 1.0529 7 6 2.3448 -2.8708 0.0129 8 6 2.0353 -2.8886 2.4921 9 7 1.5411 -4.2720 2.4828 10 6 1.9070 -4.9701 3.7225 11 1 2.8788 -4.6228 4.0733 12 6 0.8381 -4.7234 4.8015 13 6 0.2638 -6.1051 5.1769 14 6 1.3857 -7.1005 4.7902 15 1 2.1545 -7.1351 5.5622 16 6 0.8186 -8.4746 4.5424 17 1 0.9182 -8.9325 3.5694 18 6 0.1725 -9.1471 5.5579 19 7 -0.3221 -10.3464 5.3419 20 14 0.0008 -8.3554 7.2412 21 1 -1.2600 -7.5724 7.2936 22 1 -0.0288 -9.4118 8.2844 23 1 1.1546 -7.4525 7.4835 24 6 1.9463 -6.4930 3.4795 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9564 0.8898 32 1 1.6054 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0599 -2.3769 -0.9160 35 1 3.4238 -2.7956 0.1482 36 1 2.0568 -3.9211 -0.0303 37 1 1.6008 -2.3534 3.3364 38 1 3.1214 -2.8914 2.5837 39 1 1.8786 -4.7711 1.6733 40 1 1.2913 -4.2572 5.6763 41 1 0.0476 -4.0861 4.4051 42 1 0.0607 -6.1559 6.2466 43 1 -0.6415 -6.3100 4.6055 44 1 -0.7769 -10.8194 6.0562 45 1 1.3130 -6.7608 2.6337 46 1 2.9704 -6.8262 3.3110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449444795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:34 Heat of formation + Delta-G solvation = -40.636160 kcal Electronic energy + Delta-G solvation = -19214.181053 eV Core-core repulsion = 16522.919065 eV Total energy + Delta-G solvation = -2691.261988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.61823 -37.49010 -34.85696 -32.61539 -31.41688 -28.33959 -27.48661 -27.33981 -26.91726 -24.52929 -23.22002 -20.79837 -19.64270 -19.24910 -19.12156 -16.70880 -15.89778 -15.61446 -15.22849 -14.77429 -14.21786 -14.07692 -13.98548 -13.41028 -12.98185 -12.81903 -12.62509 -12.50739 -12.37524 -12.26380 -11.94307 -11.59012 -11.46024 -11.20231 -11.08465 -10.88843 -10.69464 -10.63188 -10.46293 -10.37598 -10.22133 -9.98258 -9.73782 -9.62905 -9.28432 -8.93159 -8.47551 -8.08733 -6.01065 -3.99049 3.34376 3.42411 3.44967 4.30637 4.48244 4.62594 4.72020 4.77227 4.95322 5.10333 5.20475 5.29676 5.39727 5.41212 5.43784 5.47845 5.54133 5.56745 5.64184 5.71425 5.75689 5.78498 5.80470 5.85702 5.92255 6.02078 6.05906 6.11176 6.16641 6.29956 6.38228 6.40049 6.44988 6.57083 6.70503 6.75485 6.89315 7.00468 7.17865 7.50000 7.65458 7.72544 7.85831 8.59994 9.02887 9.62576 11.12492 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.044816 B = 0.003661 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.622669 B = 7646.982289 C = 7831.577383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.150 4.150 8 C 0.063 3.937 9 N -0.682 5.682 10 C 0.082 3.918 11 H 0.034 0.966 12 C -0.112 4.112 13 C -0.127 4.127 14 C 0.015 3.985 15 H 0.029 0.971 16 C -0.507 4.507 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.905 5.905 20 Si 0.884 3.116 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.266 1.266 24 C -0.107 4.107 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.338 0.662 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.262 0.738 45 H 0.071 0.929 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 21.091 -9.001 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.112 4.112 6 H 0.101 0.899 7 C -0.208 4.208 8 C -0.066 4.066 9 N -0.314 5.314 10 C -0.028 4.028 11 H 0.052 0.948 12 C -0.150 4.150 13 C -0.165 4.165 14 C -0.004 4.004 15 H 0.047 0.953 16 C -0.545 4.545 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.544 5.544 20 Si 0.713 3.287 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.191 1.191 24 C -0.145 4.145 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.157 0.843 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.221 21.111 -8.694 23.218 hybrid contribution 0.765 0.218 0.885 1.190 sum 4.986 21.330 -7.808 23.255 Atomic orbital electron populations 1.21900 0.95260 1.02169 1.01380 1.21155 0.95986 0.95789 0.98737 1.21847 1.00769 0.96318 1.01549 1.21659 1.00539 0.94811 0.97669 1.21222 1.01487 0.93827 0.94620 0.89917 1.21905 0.99969 1.00856 0.98051 1.22020 0.96626 0.90498 0.97474 1.60694 1.63863 1.02064 1.04803 1.22272 0.95757 0.94952 0.89780 0.94759 1.22186 0.97977 0.98569 0.96299 1.22751 1.00819 0.93996 0.98890 1.20040 0.93375 0.94346 0.92661 0.95286 1.21017 1.35435 0.98754 0.99263 0.90946 1.24998 0.95037 0.94614 0.98545 1.69907 1.38416 1.12818 1.33216 0.86874 0.79065 0.78423 0.84290 1.20450 1.22430 1.19118 1.22485 0.99785 0.91379 1.00882 0.93123 0.92060 0.92817 0.91027 0.92908 0.92942 0.92816 0.91997 0.92255 0.92559 0.93199 0.92272 0.91428 0.95937 0.84315 0.93626 0.91762 0.94049 0.91428 0.92793 0.91070 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.95 37.16 0.33 -0.88 16 2 C -0.10 -0.78 2.78 -90.62 -0.25 -1.03 16 3 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 4 C -0.11 -0.96 4.15 -26.73 -0.11 -1.07 16 5 C -0.09 -0.95 2.46 -90.62 -0.22 -1.17 16 6 H 0.08 0.93 6.34 -51.93 -0.33 0.60 16 7 C -0.15 -1.44 8.73 37.16 0.32 -1.11 16 8 C 0.06 0.78 4.97 -3.82 -0.02 0.76 16 9 N -0.68 -10.05 6.16 -105.54 -0.65 -10.70 16 10 C 0.08 1.40 3.24 -66.59 -0.22 1.18 16 11 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 12 C -0.11 -2.04 6.52 -25.61 -0.17 -2.21 16 13 C -0.13 -2.80 5.08 -25.07 -0.13 -2.92 16 14 C 0.02 0.36 2.30 -89.74 -0.21 0.15 16 15 H 0.03 0.71 7.37 -51.93 -0.38 0.33 16 16 C -0.51 -14.42 9.12 -34.44 -0.31 -14.73 16 17 H 0.07 2.22 8.03 -52.49 -0.42 1.80 16 18 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 19 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 20 Si 0.88 22.34 24.46 -169.99 -4.16 18.18 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.27 -6.45 6.48 56.52 0.37 -6.08 16 24 C -0.11 -2.14 5.68 -25.03 -0.14 -2.28 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.54 6.46 -51.93 -0.34 0.20 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 6.46 -51.93 -0.34 0.15 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.60 6.68 -51.93 -0.35 0.26 16 37 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.02 0.27 8.07 -51.93 -0.42 -0.14 16 39 H 0.34 4.72 6.59 -39.29 -0.26 4.47 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 42 H 0.04 0.93 4.91 -51.93 -0.25 0.67 16 43 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.07 1.47 7.87 -51.93 -0.41 1.06 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -29.55 340.63 -8.65 -38.21 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.88 Total: 0.65 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.88 Total: -24.11 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.12 Total: -38.06 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.16 Total: 18.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.55 -8.65 -38.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.431 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds