Wall clock time and date at job start Mon Mar 30 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 N 1.46907 * 109.46896 * 119.99865 * 2 1 3 5 5 C 1.46899 * 111.00098 * 171.04786 * 4 2 1 6 6 C 1.53004 * 109.46987 * 293.95300 * 5 4 2 7 7 C 1.52992 * 109.46900 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47274 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99680 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00250 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99939 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00072 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47234 * 90.00218 * 12 10 8 14 14 H 1.48505 * 109.46997 * 210.00068 * 12 10 8 15 15 H 1.48498 * 109.47354 * 329.99945 * 12 10 8 16 16 C 1.46904 * 110.99824 * 294.99966 * 4 2 1 17 17 C 1.53780 * 113.61341 * 174.99799 * 16 4 2 18 18 C 1.53785 * 87.07773 * 140.06516 * 17 16 4 19 19 C 1.53006 * 113.61096 * 89.11741 * 18 17 16 20 20 C 1.53002 * 113.61471 * 219.93314 * 18 17 16 21 21 C 1.53781 * 87.17620 * 334.52757 * 18 17 16 22 22 H 1.08994 * 109.47279 * 300.00631 * 1 2 3 23 23 H 1.09002 * 109.46640 * 60.00136 * 1 2 3 24 24 H 1.08994 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47279 * 239.99369 * 2 1 3 26 26 H 1.08994 * 109.47539 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46695 * 300.00231 * 3 2 1 28 28 H 1.09000 * 109.46920 * 59.98947 * 3 2 1 29 29 H 1.09001 * 109.46831 * 53.94850 * 5 4 2 30 30 H 1.08994 * 109.47101 * 173.95147 * 5 4 2 31 31 H 1.08997 * 109.46782 * 300.00193 * 6 5 4 32 32 H 1.09005 * 109.46868 * 59.99755 * 6 5 4 33 33 H 1.08997 * 109.47670 * 299.99783 * 7 6 5 34 34 H 1.09005 * 109.47451 * 60.00246 * 7 6 5 35 35 H 0.97004 * 119.99903 * 179.97438 * 11 10 8 36 36 H 1.09006 * 112.84917 * 43.80225 * 16 4 2 37 37 H 1.08999 * 113.61093 * 25.52257 * 17 16 4 38 38 H 1.08993 * 113.61732 * 254.61338 * 17 16 4 39 39 H 1.09001 * 109.47002 * 181.52532 * 19 18 17 40 40 H 1.08993 * 109.46955 * 301.52970 * 19 18 17 41 41 H 1.09000 * 109.47050 * 61.52798 * 19 18 17 42 42 H 1.08999 * 109.47105 * 298.47603 * 20 18 17 43 43 H 1.09000 * 109.46611 * 58.47476 * 20 18 17 44 44 H 1.08998 * 109.47047 * 178.47668 * 20 18 17 45 45 H 1.08996 * 113.61535 * 140.02262 * 21 18 17 46 46 H 1.08996 * 113.61155 * 270.92491 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4724 -0.8997 1.1317 6 6 3.7965 -1.8697 -0.0064 7 6 5.3096 -2.0850 -0.0775 8 6 5.6289 -3.0408 -1.1980 9 1 4.8323 -3.4531 -1.7996 10 6 6.9379 -3.3890 -1.4552 11 7 7.2165 -4.2227 -2.4333 12 14 8.3156 -2.6765 -0.4143 13 1 8.5683 -3.5654 0.7481 14 1 9.5499 -2.5693 -1.2331 15 1 7.9241 -1.3282 0.0695 16 6 1.6486 0.0392 2.4181 17 6 2.0253 -0.6946 3.7160 18 6 2.4336 0.6767 4.2799 19 6 1.2889 1.4209 4.9703 20 6 3.7103 0.6375 5.1222 21 6 2.6681 1.1197 2.8261 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.9672 0.0540 0.9482 30 1 3.8244 -1.3162 2.0754 31 1 3.3016 -2.8233 0.1770 32 1 3.4444 -1.4531 -0.9501 33 1 5.8041 -1.1312 -0.2611 34 1 5.6621 -2.5013 0.8662 35 1 8.1376 -4.4674 -2.6145 36 1 0.6185 0.3953 2.4010 37 1 2.8605 -1.3853 3.6004 38 1 1.1731 -1.1411 4.2282 39 1 1.6440 2.3907 5.3189 40 1 0.4715 1.5658 4.2640 41 1 0.9357 0.8365 5.8199 42 1 3.5570 -0.0117 5.9843 43 1 4.5320 0.2520 4.5187 44 1 3.9513 1.6441 5.4637 45 1 2.3346 2.1367 2.6203 46 1 3.6787 0.9240 2.4676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452107278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:23 Heat of formation + Delta-G solvation = 4.427929 kcal Electronic energy + Delta-G solvation = -20042.340538 eV Core-core repulsion = 17353.032676 eV Total energy + Delta-G solvation = -2689.307862 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.59043 -37.00630 -33.98253 -32.14363 -31.14184 -29.07919 -27.57226 -27.42509 -26.27242 -25.49342 -22.81945 -22.16680 -20.20061 -18.79628 -17.91076 -16.65340 -16.08412 -15.64401 -15.01957 -14.42415 -14.25733 -14.06589 -13.73500 -13.29767 -13.02713 -12.99291 -12.77072 -12.51622 -12.22742 -12.07322 -11.90903 -11.73635 -11.61820 -11.49017 -11.24020 -11.11594 -10.85801 -10.66381 -10.61909 -10.40439 -10.11251 -9.99204 -9.77430 -9.55072 -9.50240 -9.11925 -8.49854 -7.90459 -6.00383 -3.97650 3.32644 3.39760 3.43476 4.09200 4.44834 4.48369 4.57777 4.73732 4.90932 5.04610 5.19339 5.29605 5.32526 5.34498 5.45049 5.49945 5.54299 5.62128 5.64015 5.71508 5.75357 5.77637 5.83732 5.85587 5.88945 5.91034 6.00435 6.05843 6.11270 6.12633 6.23611 6.29155 6.41617 6.41693 6.51110 6.63970 6.68753 6.98556 7.35110 7.43415 7.48194 7.54695 7.85060 8.59627 9.05634 9.62615 11.13330 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.005542 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.782005 B = 5050.873258 C = 5924.244821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 C -0.186 4.186 4 N -0.520 5.520 5 C 0.049 3.951 6 C -0.098 4.098 7 C -0.012 4.012 8 C -0.516 4.516 9 H 0.071 0.929 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.879 3.121 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.066 3.934 17 C -0.124 4.124 18 C -0.092 4.092 19 C -0.125 4.125 20 C -0.134 4.134 21 C -0.168 4.168 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 12.860 12.954 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.245 4.245 4 N -0.241 5.241 5 C -0.078 4.078 6 C -0.136 4.136 7 C -0.050 4.050 8 C -0.554 4.554 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.545 5.545 12 Si 0.707 3.293 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.043 4.043 17 C -0.162 4.162 18 C -0.092 4.092 19 C -0.182 4.182 20 C -0.192 4.192 21 C -0.207 4.207 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.633 12.290 12.863 21.820 hybrid contribution 1.300 1.110 0.416 1.759 sum -11.333 13.400 13.280 22.008 Atomic orbital electron populations 1.21834 0.94951 1.02156 1.00882 1.21727 0.95112 0.92481 0.94411 1.22602 1.01894 0.98189 1.01806 1.62231 1.14313 1.46653 1.00925 1.22393 0.86148 0.98636 1.00600 1.21486 0.98340 0.97974 0.95760 1.19542 0.91899 0.96650 0.96945 1.21156 0.93640 1.25743 1.14902 0.91056 1.25031 0.98761 0.94731 0.95025 1.69921 1.19327 1.34681 1.30540 0.86785 0.81722 0.80268 0.80541 1.20323 1.21463 1.19116 1.23174 0.98268 0.93039 0.89869 1.23218 1.01546 0.95831 0.95562 1.21705 0.95815 0.97064 0.94623 1.21570 0.97079 0.99573 1.00024 1.21709 0.96570 1.01285 0.99623 1.24012 1.01651 0.99337 0.95703 0.93172 0.92691 0.91941 0.89192 0.92349 0.92726 0.92274 0.94765 0.91204 0.92132 0.92916 0.96998 0.97210 0.92825 0.88333 0.89403 0.91627 0.92727 0.92631 0.92516 0.92732 0.92424 0.92982 0.91902 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.16 37.16 0.34 -1.24 16 2 C 0.07 0.95 2.80 -67.71 -0.19 0.76 16 3 C -0.19 -2.28 7.90 37.16 0.29 -1.98 16 4 N -0.52 -7.42 4.60 -217.58 -1.00 -8.42 16 5 C 0.05 0.81 3.51 -3.82 -0.01 0.80 16 6 C -0.10 -1.98 5.10 -26.73 -0.14 -2.12 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 9 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 12 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 16 C 0.07 0.78 2.67 -66.76 -0.18 0.61 16 17 C -0.12 -1.44 6.72 -25.92 -0.17 -1.61 16 18 C -0.09 -0.94 1.39 -153.69 -0.21 -1.15 16 19 C -0.13 -1.09 9.07 37.16 0.34 -0.75 16 20 C -0.13 -1.36 9.18 37.16 0.34 -1.02 16 21 C -0.17 -1.92 4.71 -25.78 -0.12 -2.04 16 22 H 0.05 0.52 6.32 -51.93 -0.33 0.19 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.09 1.37 6.12 -51.93 -0.32 1.05 16 26 H 0.06 0.79 6.53 -51.93 -0.34 0.45 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.66 5.30 -51.93 -0.28 0.39 16 29 H 0.03 0.56 4.90 -51.93 -0.25 0.31 16 30 H 0.07 1.15 6.08 -51.93 -0.32 0.83 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.08 6.38 -51.93 -0.33 0.74 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 34 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.10 1.11 5.65 -51.93 -0.29 0.81 16 37 H 0.09 1.15 6.27 -51.93 -0.33 0.83 16 38 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.47 7.33 -51.93 -0.38 0.09 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 46 H 0.09 1.17 5.56 -51.93 -0.29 0.88 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -30.02 333.79 -8.50 -38.52 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.38 Total: -1.26 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -0.26 Total: -23.69 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.23 Total: -36.04 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.02 -8.50 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452107278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.947 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds