Wall clock time and date at job start Mon Mar 30 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 N 1.46907 * 109.46896 * 119.99865 * 2 1 3 5 5 C 1.46899 * 111.00098 * 171.04786 * 4 2 1 6 6 C 1.53004 * 109.46987 * 293.95300 * 5 4 2 7 7 C 1.52992 * 109.46900 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47274 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99680 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00250 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99939 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00072 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47234 * 90.00218 * 12 10 8 14 14 H 1.48505 * 109.46997 * 210.00068 * 12 10 8 15 15 H 1.48498 * 109.47354 * 329.99945 * 12 10 8 16 16 C 1.46904 * 110.99824 * 294.99966 * 4 2 1 17 17 C 1.53780 * 113.61341 * 174.99799 * 16 4 2 18 18 C 1.53785 * 87.07773 * 140.06516 * 17 16 4 19 19 C 1.53006 * 113.61096 * 89.11741 * 18 17 16 20 20 C 1.53002 * 113.61471 * 219.93314 * 18 17 16 21 21 C 1.53781 * 87.17620 * 334.52757 * 18 17 16 22 22 H 1.08994 * 109.47279 * 300.00631 * 1 2 3 23 23 H 1.09002 * 109.46640 * 60.00136 * 1 2 3 24 24 H 1.08994 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47279 * 239.99369 * 2 1 3 26 26 H 1.08994 * 109.47539 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46695 * 300.00231 * 3 2 1 28 28 H 1.09000 * 109.46920 * 59.98947 * 3 2 1 29 29 H 1.09001 * 109.46831 * 53.94850 * 5 4 2 30 30 H 1.08994 * 109.47101 * 173.95147 * 5 4 2 31 31 H 1.08997 * 109.46782 * 300.00193 * 6 5 4 32 32 H 1.09005 * 109.46868 * 59.99755 * 6 5 4 33 33 H 1.08997 * 109.47670 * 299.99783 * 7 6 5 34 34 H 1.09005 * 109.47451 * 60.00246 * 7 6 5 35 35 H 0.97004 * 119.99903 * 179.97438 * 11 10 8 36 36 H 1.09006 * 112.84917 * 43.80225 * 16 4 2 37 37 H 1.08999 * 113.61093 * 25.52257 * 17 16 4 38 38 H 1.08993 * 113.61732 * 254.61338 * 17 16 4 39 39 H 1.09001 * 109.47002 * 181.52532 * 19 18 17 40 40 H 1.08993 * 109.46955 * 301.52970 * 19 18 17 41 41 H 1.09000 * 109.47050 * 61.52798 * 19 18 17 42 42 H 1.08999 * 109.47105 * 298.47603 * 20 18 17 43 43 H 1.09000 * 109.46611 * 58.47476 * 20 18 17 44 44 H 1.08998 * 109.47047 * 178.47668 * 20 18 17 45 45 H 1.08996 * 113.61535 * 140.02262 * 21 18 17 46 46 H 1.08996 * 113.61155 * 270.92491 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4724 -0.8997 1.1317 6 6 3.7965 -1.8697 -0.0064 7 6 5.3096 -2.0850 -0.0775 8 6 5.6289 -3.0408 -1.1980 9 1 4.8323 -3.4531 -1.7996 10 6 6.9379 -3.3890 -1.4552 11 7 7.2165 -4.2227 -2.4333 12 14 8.3156 -2.6765 -0.4143 13 1 8.5683 -3.5654 0.7481 14 1 9.5499 -2.5693 -1.2331 15 1 7.9241 -1.3282 0.0695 16 6 1.6486 0.0392 2.4181 17 6 2.0253 -0.6946 3.7160 18 6 2.4336 0.6767 4.2799 19 6 1.2889 1.4209 4.9703 20 6 3.7103 0.6375 5.1222 21 6 2.6681 1.1197 2.8261 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.9672 0.0540 0.9482 30 1 3.8244 -1.3162 2.0754 31 1 3.3016 -2.8233 0.1770 32 1 3.4444 -1.4531 -0.9501 33 1 5.8041 -1.1312 -0.2611 34 1 5.6621 -2.5013 0.8662 35 1 8.1376 -4.4674 -2.6145 36 1 0.6185 0.3953 2.4010 37 1 2.8605 -1.3853 3.6004 38 1 1.1731 -1.1411 4.2282 39 1 1.6440 2.3907 5.3189 40 1 0.4715 1.5658 4.2640 41 1 0.9357 0.8365 5.8199 42 1 3.5570 -0.0117 5.9843 43 1 4.5320 0.2520 4.5187 44 1 3.9513 1.6441 5.4637 45 1 2.3346 2.1367 2.6203 46 1 3.6787 0.9240 2.4676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452107278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:23 Heat of formation + Delta-G solvation = -12.815669 kcal Electronic energy + Delta-G solvation = -20043.088277 eV Core-core repulsion = 17353.032676 eV Total energy + Delta-G solvation = -2690.055601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56642 -38.06676 -35.83360 -33.98105 -32.35186 -30.36081 -28.47353 -28.23796 -27.84291 -26.40257 -24.49149 -23.18154 -21.97362 -19.85344 -19.09302 -18.57498 -17.18336 -16.83664 -16.25563 -16.17079 -15.41127 -15.09358 -14.79900 -14.77471 -14.46121 -14.02320 -13.90116 -13.65833 -13.47233 -13.25583 -13.09274 -13.00858 -12.75371 -12.60075 -12.42760 -12.28097 -12.19104 -11.86774 -11.82521 -11.69771 -11.57610 -11.41080 -11.26647 -11.10720 -10.96232 -10.78075 -10.71204 -9.01857 -8.30148 -6.34223 1.34090 1.35955 1.48133 2.35225 2.99060 3.05004 3.60915 3.71872 3.84723 3.93882 4.06208 4.20318 4.25203 4.38117 4.41983 4.53248 4.54960 4.65681 4.70062 4.76148 4.80193 4.83783 4.87129 4.89198 4.90963 4.99045 5.02340 5.04399 5.08029 5.09720 5.19197 5.20173 5.27235 5.29667 5.35204 5.43226 5.52816 5.54627 5.60503 5.65547 5.67706 6.24312 6.32966 6.39919 6.73775 7.30271 8.87053 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.005542 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.782005 B = 5050.873258 C = 5924.244821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 C -0.179 4.179 4 N -0.529 5.529 5 C 0.065 3.935 6 C -0.088 4.088 7 C -0.007 4.007 8 C -0.532 4.532 9 H 0.028 0.972 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.952 3.048 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.247 1.247 16 C 0.066 3.934 17 C -0.128 4.128 18 C -0.083 4.083 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.165 4.165 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.035 15.098 15.236 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 C -0.237 4.237 4 N -0.251 5.251 5 C -0.062 4.062 6 C -0.126 4.126 7 C -0.045 4.045 8 C -0.570 4.570 9 H 0.046 0.954 10 C -0.193 4.193 11 N -0.593 5.593 12 Si 0.775 3.225 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.171 1.171 16 C -0.042 4.042 17 C -0.166 4.166 18 C -0.083 4.083 19 C -0.180 4.180 20 C -0.193 4.193 21 C -0.204 4.204 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.149 14.537 15.153 24.776 hybrid contribution 1.375 0.344 -0.372 1.465 sum -11.775 14.881 14.781 24.054 Atomic orbital electron populations 1.21775 0.93014 1.02027 1.02293 1.21763 0.96636 0.92824 0.92992 1.22524 1.00719 0.97463 1.03033 1.62167 1.12535 1.48067 1.02347 1.22078 0.88050 0.97466 0.98627 1.21304 0.95652 0.98369 0.97282 1.19466 0.94552 0.95361 0.95146 1.21493 0.92926 1.26670 1.15905 0.95357 1.26037 1.01840 0.95028 0.96400 1.70078 1.20295 1.36371 1.32598 0.85634 0.77742 0.80360 0.78776 1.19035 1.20801 1.17073 1.23290 0.99138 0.93187 0.88626 1.23216 1.01216 0.96363 0.95776 1.21697 0.96514 0.95992 0.94124 1.21567 0.96406 0.99799 1.00226 1.21712 0.96030 1.01941 0.99570 1.23930 1.00387 0.99584 0.96544 0.91640 0.91366 0.92858 0.91878 0.94039 0.91690 0.90814 0.94475 0.91071 0.93708 0.93729 0.96499 0.96482 0.92482 0.86812 0.91264 0.90823 0.91892 0.92085 0.91808 0.92144 0.93836 0.91997 0.90869 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.16 71.98 0.66 -2.09 16 2 C 0.07 1.70 2.80 44.91 0.13 1.83 16 3 C -0.18 -4.07 7.90 71.98 0.57 -3.50 16 4 N -0.53 -14.65 4.60 -842.28 -3.87 -18.53 16 5 C 0.07 2.13 3.51 86.30 0.30 2.43 16 6 C -0.09 -3.66 5.10 30.59 0.16 -3.50 16 7 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 8 C -0.53 -31.95 9.66 25.60 0.25 -31.70 16 9 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 10 C 0.00 0.20 5.47 84.65 0.46 0.67 16 11 N -0.95 -61.33 13.96 21.44 0.30 -61.03 16 12 Si 0.95 45.34 27.47 68.60 1.88 47.23 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 16 C 0.07 1.44 2.67 45.53 0.12 1.56 16 17 C -0.13 -2.74 6.72 31.12 0.21 -2.53 16 18 C -0.08 -1.49 1.39 -51.65 -0.07 -1.57 16 19 C -0.12 -1.71 9.07 71.98 0.65 -1.06 16 20 C -0.14 -2.45 9.18 71.98 0.66 -1.79 16 21 C -0.17 -3.40 4.71 31.21 0.15 -3.25 16 22 H 0.06 1.15 6.32 -2.39 -0.02 1.13 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.96 6.12 -2.39 -0.01 1.94 16 26 H 0.04 1.08 6.53 -2.39 -0.02 1.06 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.45 5.30 -2.39 -0.01 1.44 16 29 H 0.04 1.20 4.90 -2.39 -0.01 1.19 16 30 H 0.07 2.30 6.08 -2.39 -0.01 2.29 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.89 6.38 -2.38 -0.02 1.88 16 33 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 34 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.11 2.18 5.65 -2.38 -0.01 2.16 16 37 H 0.07 1.76 6.27 -2.39 -0.01 1.74 16 38 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.79 7.33 -2.39 -0.02 0.78 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 0.90 7.98 -2.39 -0.02 0.88 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.36 6.93 -2.39 -0.02 1.34 16 46 H 0.07 1.77 5.56 -2.39 -0.01 1.76 16 Total: -1.00 -65.93 333.79 3.54 -62.39 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.87 Total: 14.68 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.36 Total: -44.74 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.58 Total: -79.55 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -65.93 3.54 -62.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452107278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.578 kcal (2) G-P(sol) polarization free energy of solvation -65.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds