Wall clock time and date at job start Mon Mar 30 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.08997 * 109.47156 * 175.62804 * 3 2 1 5 5 C 1.50693 * 109.46945 * 55.62662 * 3 2 1 6 6 H 1.07999 * 120.00245 * 239.72502 * 5 3 2 7 7 C 1.37882 * 120.00019 * 60.00266 * 5 3 2 8 8 N 1.31509 * 119.99766 * 359.71954 * 7 5 3 9 9 Si 1.86798 * 120.00100 * 179.72410 * 7 5 3 10 10 H 1.48501 * 109.47474 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47285 * 119.99778 * 9 7 5 12 12 H 1.48504 * 109.46971 * 239.99715 * 9 7 5 13 13 N 1.46904 * 109.47159 * 295.63133 * 3 2 1 14 14 C 1.46904 * 110.99545 * 273.92349 * 13 3 2 15 15 C 1.53001 * 109.46744 * 176.27915 * 14 13 3 16 16 H 1.08997 * 109.47066 * 304.99605 * 15 14 13 17 17 C 1.52999 * 109.47301 * 65.00115 * 15 14 13 18 18 C 1.53001 * 109.46773 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47295 * 299.99472 * 18 17 15 20 20 C 1.52999 * 109.46779 * 60.00532 * 19 18 17 21 21 C 1.52999 * 109.47030 * 300.00075 * 20 19 18 22 22 C 1.53007 * 109.47169 * 300.00163 * 21 20 19 23 23 C 1.53001 * 109.47120 * 180.02562 * 21 20 19 24 24 H 1.09007 * 109.47124 * 185.26456 * 1 2 3 25 25 H 1.09003 * 109.46995 * 305.26466 * 1 2 3 26 26 H 1.09001 * 109.47618 * 65.26103 * 1 2 3 27 27 H 1.09001 * 109.46889 * 240.00516 * 2 1 3 28 28 H 1.08993 * 109.47371 * 120.00496 * 2 1 3 29 29 H 0.97005 * 119.99983 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00321 * 37.87685 * 13 3 2 31 31 H 1.08998 * 109.47237 * 296.27825 * 14 13 3 32 32 H 1.08999 * 109.47104 * 56.27849 * 14 13 3 33 33 H 1.09001 * 109.46624 * 299.99763 * 17 15 14 34 34 H 1.09000 * 109.47015 * 59.99966 * 17 15 14 35 35 H 1.09006 * 109.47030 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.47395 * 60.00177 * 18 17 15 37 37 H 1.08997 * 109.47061 * 300.00345 * 19 18 17 38 38 H 1.08999 * 109.47229 * 180.02562 * 19 18 17 39 39 H 1.08993 * 109.47256 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47015 * 59.99844 * 20 19 18 41 41 H 1.08999 * 109.47202 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.46699 * 299.99974 * 22 21 20 43 43 H 1.08993 * 109.47012 * 59.99578 * 22 21 20 44 44 H 1.09010 * 109.46686 * 299.99476 * 23 21 20 45 45 H 1.08993 * 109.47660 * 59.99715 * 23 21 20 46 46 H 1.08999 * 109.47259 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4434 0.0783 5 6 1.4512 2.1834 1.1727 6 1 0.8435 3.0607 1.0072 7 6 1.6930 1.7446 2.4572 8 7 2.4329 0.6763 2.6588 9 14 0.9695 2.6675 3.9112 10 1 0.1806 3.8257 3.4196 11 1 0.0847 1.7589 4.6837 12 1 2.0674 3.1515 4.7863 13 7 1.6384 2.1039 -1.2487 14 6 2.6153 1.8507 -2.3162 15 6 2.1180 2.4756 -3.6213 16 1 1.1202 2.0995 -3.8471 17 6 2.0676 3.9974 -3.4713 18 6 1.5697 4.6222 -4.7762 19 6 2.5230 4.2532 -5.9146 20 6 2.5734 2.7314 -6.0646 21 6 3.0713 2.1066 -4.7598 22 6 4.4720 2.6347 -4.4433 23 6 3.1223 0.5849 -4.9099 24 1 -0.3634 -1.0234 0.0943 25 1 -0.3633 0.5933 0.8391 26 1 -0.3634 0.4301 -0.9333 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.6028 0.3673 3.5625 30 1 0.7132 1.8153 -1.5294 31 1 3.5738 2.2926 -2.0439 32 1 2.7360 0.7758 -2.4509 33 1 1.3881 4.2602 -2.6606 34 1 3.0655 4.3735 -3.2455 35 1 1.5333 5.7063 -4.6692 36 1 0.5718 4.2460 -5.0015 37 1 3.5209 4.6294 -5.6892 38 1 2.1685 4.6987 -6.8442 39 1 3.2529 2.4685 -6.8753 40 1 1.5755 2.3553 -6.2900 41 1 4.8269 2.1892 -3.5140 42 1 5.1512 2.3717 -5.2544 43 1 4.4361 3.7188 -4.3366 44 1 2.1244 0.2084 -5.1355 45 1 3.8016 0.3223 -5.7208 46 1 3.4774 0.1397 -3.9805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:12 Heat of formation + Delta-G solvation = -53.006654 kcal Electronic energy + Delta-G solvation = -20300.720521 eV Core-core repulsion = 17608.922108 eV Total energy + Delta-G solvation = -2691.798413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84499 -38.08611 -34.74969 -34.06478 -32.96867 -30.92910 -28.51944 -28.14561 -27.15217 -25.49573 -24.95954 -22.38187 -21.62474 -21.14698 -19.08175 -18.04137 -16.81050 -16.44450 -16.13372 -15.83511 -15.35333 -15.16226 -14.81107 -14.51019 -14.40266 -14.12499 -13.78921 -13.42247 -13.35512 -13.05259 -12.81069 -12.71325 -12.58749 -12.43582 -12.42772 -12.23625 -12.14378 -11.89461 -11.83395 -11.63604 -11.52823 -11.38664 -11.00774 -10.93236 -10.72424 -10.54032 -10.42484 -8.80781 -8.04102 -6.12509 1.41509 1.44208 1.55571 2.46446 3.24350 3.63630 3.77935 3.84091 4.06940 4.22510 4.28117 4.50596 4.51574 4.53213 4.57802 4.60072 4.63350 4.70420 4.78535 4.82609 4.85775 4.88677 4.99163 5.05357 5.08882 5.12002 5.14598 5.24542 5.27349 5.31863 5.35780 5.39329 5.43047 5.44414 5.51926 5.59647 5.68373 5.71140 5.75123 5.79826 5.88134 6.35335 6.74076 6.92401 7.02900 7.55647 9.01357 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.005278 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.580002 B = 5303.796415 C = 5669.439328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C 0.222 3.778 4 H -0.010 1.010 5 C -0.495 4.495 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.068 3.932 15 C -0.061 4.061 16 H 0.061 0.939 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.102 4.102 21 C -0.055 4.055 22 C -0.144 4.144 23 C -0.143 4.143 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.258 0.742 30 H 0.329 0.671 31 H 0.046 0.954 32 H 0.015 0.985 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 3.215 -17.525 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 C 0.113 3.887 4 H 0.008 0.992 5 C -0.534 4.534 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.314 5.314 14 C -0.062 4.062 15 C -0.080 4.080 16 H 0.079 0.921 17 C -0.142 4.142 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.139 4.139 21 C -0.056 4.056 22 C -0.201 4.201 23 C -0.200 4.200 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.192 3.732 -17.208 17.609 hybrid contribution -0.231 -0.820 1.223 1.490 sum -0.039 2.912 -15.985 16.248 Atomic orbital electron populations 1.21470 0.95846 0.99565 1.00842 1.21930 0.96536 1.00133 0.99115 1.18918 0.93099 0.89369 0.87302 0.99176 1.21323 1.30243 1.11023 0.90811 0.93013 1.25612 0.95950 0.95919 1.01159 1.70025 1.40090 1.24933 1.21295 0.85601 0.78126 0.78826 0.79637 1.19346 1.20743 1.21124 1.60708 1.04715 1.62521 1.03467 1.22056 0.95759 0.96788 0.91558 1.21064 0.98347 0.95903 0.92718 0.92100 1.21439 1.00915 0.94355 0.97478 1.21527 0.99154 1.00040 0.94551 1.21566 0.99790 0.95844 0.98270 1.21546 1.01223 0.95325 0.95806 1.20486 0.95058 0.95177 0.94880 1.21989 0.95828 1.01336 1.00905 1.21926 1.01829 0.94941 1.01337 0.93996 0.93552 0.93243 0.96035 0.92108 0.93296 0.85265 0.93508 0.96657 0.92999 0.92934 0.91917 0.92238 0.91813 0.90995 0.90939 0.92009 0.94266 0.91737 0.92011 0.92694 0.91507 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.14 -6.58 5.52 30.59 0.17 -6.41 16 3 C 0.22 11.31 2.33 44.17 0.10 11.41 16 4 H -0.01 -0.56 7.83 -2.39 -0.02 -0.58 16 5 C -0.50 -27.39 7.28 25.60 0.19 -27.21 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.63 5.30 84.66 0.45 1.08 16 8 N -0.92 -53.60 11.36 21.45 0.24 -53.36 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.68 -29.01 5.71 -495.45 -2.83 -31.85 16 14 C 0.07 2.45 4.15 86.30 0.36 2.81 16 15 C -0.06 -1.73 1.60 -10.79 -0.02 -1.74 16 16 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 17 C -0.10 -2.90 4.82 30.59 0.15 -2.75 16 18 C -0.12 -2.48 5.92 30.60 0.18 -2.30 16 19 C -0.12 -2.12 5.65 30.60 0.17 -1.95 16 20 C -0.10 -1.88 4.73 30.59 0.14 -1.74 16 21 C -0.06 -1.27 0.54 -52.18 -0.03 -1.30 16 22 C -0.14 -3.32 7.43 71.98 0.53 -2.78 16 23 C -0.14 -3.23 8.13 71.98 0.59 -2.65 16 24 H 0.04 1.58 8.14 -2.38 -0.02 1.57 16 25 H 0.05 2.16 6.89 -2.39 -0.02 2.14 16 26 H 0.05 1.84 6.61 -2.39 -0.02 1.83 16 27 H 0.02 0.94 7.40 -2.39 -0.02 0.93 16 28 H 0.06 3.31 6.19 -2.39 -0.01 3.30 16 29 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 30 H 0.33 13.23 6.54 -89.69 -0.59 12.64 16 31 H 0.05 1.83 6.69 -2.39 -0.02 1.82 16 32 H 0.02 0.57 5.41 -2.39 -0.01 0.56 16 33 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 34 H 0.05 1.52 6.43 -2.39 -0.02 1.50 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.16 6.43 -2.39 -0.02 1.15 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.04 1.05 6.55 -2.39 -0.02 1.03 16 42 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 1.41 4.81 -2.39 -0.01 1.40 16 44 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.04 1.11 6.32 -2.39 -0.02 1.09 16 Total: -1.00 -58.67 330.11 3.44 -55.23 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.34 Total: 23.45 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.66 Total: -39.93 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.59 Total: -85.20 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -58.67 3.44 -55.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.221 kcal (2) G-P(sol) polarization free energy of solvation -58.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds