Wall clock time and date at job start Mon Mar 30 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 108.77289 * 2 1 4 4 C 1.53821 * 108.92828 * 118.29611 * 2 1 3 5 5 C 1.54068 * 112.88519 * 162.33518 * 4 2 1 6 6 C 1.50477 * 112.50104 * 41.86797 * 5 4 2 7 7 C 1.54240 * 108.52285 * 265.85027 * 6 5 4 8 8 C 1.45546 * 112.40288 * 79.98349 * 7 6 5 9 9 C 1.50466 * 108.87850 * 241.48009 * 2 1 3 10 10 H 1.08996 * 109.63510 * 264.97383 * 9 2 1 11 11 N 1.46902 * 109.62673 * 25.36446 * 9 2 1 12 12 C 1.46905 * 111.00141 * 69.95441 * 11 9 2 13 13 C 1.46909 * 110.99871 * 193.90416 * 11 9 2 14 14 C 1.53004 * 109.46654 * 169.99996 * 13 11 9 15 15 C 1.52999 * 109.46600 * 179.97438 * 14 13 11 16 16 C 1.50704 * 109.46919 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99749 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99828 * 180.27622 * 16 15 14 19 19 N 1.31516 * 120.00154 * 359.72587 * 18 16 15 20 20 Si 1.86800 * 119.99841 * 179.72811 * 18 16 15 21 21 H 1.48500 * 109.47255 * 59.99856 * 20 18 16 22 22 H 1.48508 * 109.47090 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47032 * 299.99812 * 20 18 16 24 24 H 1.08999 * 109.46747 * 171.98949 * 1 2 3 25 25 H 1.09000 * 109.46814 * 291.98459 * 1 2 3 26 26 H 1.08992 * 109.46641 * 51.98838 * 1 2 3 27 27 H 1.08994 * 108.66084 * 41.53963 * 4 2 1 28 28 H 1.08999 * 108.80672 * 283.23595 * 4 2 1 29 29 H 1.08998 * 108.87990 * 281.08515 * 5 4 2 30 30 H 1.09007 * 108.79776 * 162.58800 * 5 4 2 31 31 H 1.08995 * 109.62770 * 146.13416 * 6 5 4 32 32 H 1.09004 * 109.62576 * 25.55864 * 6 5 4 33 33 H 1.08999 * 108.89478 * 319.23006 * 7 6 5 34 34 H 1.08994 * 108.89208 * 200.73595 * 7 6 5 35 35 H 1.08999 * 108.88917 * 177.31045 * 8 7 6 36 36 H 1.08995 * 108.82069 * 58.76417 * 8 7 6 37 37 H 1.08993 * 109.47036 * 191.32023 * 12 11 9 38 38 H 1.09001 * 109.46863 * 311.32094 * 12 11 9 39 39 H 1.08999 * 109.47161 * 71.31483 * 12 11 9 40 40 H 1.08993 * 109.46634 * 50.00149 * 13 11 9 41 41 H 1.08996 * 109.47040 * 289.99522 * 13 11 9 42 42 H 1.09000 * 109.46853 * 60.00501 * 14 13 11 43 43 H 1.08998 * 109.47225 * 300.00288 * 14 13 11 44 44 H 1.09003 * 109.47396 * 60.00235 * 15 14 13 45 45 H 1.08998 * 109.47581 * 300.00087 * 15 14 13 46 46 H 0.96998 * 119.99816 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8808 1.0320 0.0000 4 6 2.0290 -0.6897 1.2812 5 6 3.5027 -1.1297 1.1897 6 6 4.3734 -0.0933 0.5323 7 6 4.4796 -0.4242 -0.9704 8 6 3.3116 0.0156 -1.7192 9 6 2.0169 -0.6798 -1.2510 10 1 2.2205 -1.7299 -1.0416 11 7 0.9935 -0.5750 -2.2996 12 6 0.8707 0.8081 -2.7792 13 6 1.2813 -1.4934 -3.4096 14 6 0.0800 -1.5415 -4.3561 15 6 0.3800 -2.4975 -5.5124 16 6 -0.8034 -2.5454 -6.4443 17 1 -1.6813 -1.9530 -6.2332 18 6 -0.7671 -3.3496 -7.5637 19 7 0.3022 -4.0707 -7.8210 20 14 -2.2369 -3.4148 -8.7148 21 1 -2.5021 -2.0578 -9.2563 22 1 -1.9481 -4.3473 -9.8339 23 1 -3.4290 -3.8918 -7.9688 24 1 -0.3633 -1.0176 -0.1432 25 1 -0.3633 0.3847 0.9530 26 1 -0.3632 0.6328 -0.8096 27 1 1.4110 -1.5679 1.4678 28 1 1.9195 0.0008 2.1174 29 1 3.5598 -2.0541 0.6151 30 1 3.8764 -1.3170 2.1964 31 1 5.3660 -0.1103 0.9821 32 1 3.9276 0.8933 0.6594 33 1 4.5885 -1.5024 -1.0875 34 1 5.3646 0.0644 -1.3777 35 1 3.4671 -0.2024 -2.7758 36 1 3.1989 1.0925 -1.5942 37 1 -0.0194 0.8991 -3.4016 38 1 0.7884 1.4822 -1.9266 39 1 1.7520 1.0691 -3.3650 40 1 1.4732 -2.4911 -3.0151 41 1 2.1584 -1.1426 -3.9533 42 1 -0.1119 -0.5437 -4.7505 43 1 -0.7971 -1.8922 -3.8123 44 1 0.5723 -3.4954 -5.1183 45 1 1.2571 -2.1464 -6.0560 46 1 0.3275 -4.6367 -8.6083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691108159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:32 Heat of formation + Delta-G solvation = -27.624836 kcal Electronic energy + Delta-G solvation = -19848.228124 eV Core-core repulsion = 17157.530349 eV Total energy + Delta-G solvation = -2690.697774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05546 -36.46412 -33.94211 -33.39779 -31.85077 -30.22718 -27.68660 -26.79038 -25.72142 -23.86523 -22.76969 -21.77794 -20.41783 -19.65048 -18.62605 -16.35649 -15.92452 -15.43611 -15.01768 -14.79070 -14.41834 -14.17551 -13.89831 -13.74099 -13.06529 -12.84165 -12.58421 -12.42528 -12.13475 -11.72636 -11.65473 -11.59679 -11.31339 -11.12342 -10.91419 -10.83992 -10.71491 -10.57432 -10.54337 -10.45611 -10.25950 -10.24552 -10.10142 -9.53989 -9.25511 -9.00789 -8.29769 -7.87693 -5.95368 -3.97226 3.36438 3.40346 3.43262 4.24327 4.49968 4.51092 4.59932 4.84152 5.04541 5.06472 5.15036 5.27433 5.34652 5.39155 5.40416 5.52610 5.66732 5.69106 5.73905 5.80455 5.87392 5.89890 6.00126 6.02334 6.04014 6.08607 6.11649 6.15777 6.20494 6.23879 6.29416 6.35435 6.43287 6.50000 6.65698 6.78978 6.88022 7.19784 7.48115 7.52866 7.73694 7.89695 8.05623 8.49260 9.09922 9.66467 11.16103 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036262 B = 0.004018 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.977363 B = 6967.540793 C = 7284.145938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.149 4.149 9 C 0.091 3.909 10 H 0.080 0.920 11 N -0.530 5.530 12 C 0.020 3.980 13 C 0.055 3.945 14 C -0.103 4.103 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 9.090 17.909 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.188 4.188 9 C -0.017 4.017 10 H 0.098 0.902 11 N -0.252 5.252 12 C -0.128 4.128 13 C -0.072 4.072 14 C -0.141 4.141 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.360 8.819 17.974 21.007 hybrid contribution 0.117 0.124 -1.143 1.155 sum 6.477 8.943 16.832 20.131 Atomic orbital electron populations 1.21764 0.94221 1.02996 0.99955 1.20879 0.96793 0.98858 0.93393 0.92285 1.21906 0.95425 1.00338 0.97059 1.21366 0.95003 0.99108 1.00342 1.21334 0.99217 0.99504 0.95304 1.20423 0.98016 1.01481 0.95239 1.21150 0.96329 1.00830 1.00455 1.21487 0.88704 0.99806 0.91751 0.90180 1.62457 1.44691 1.06291 1.11725 1.22457 1.00953 0.89824 0.99534 1.22319 0.98340 0.95419 0.91117 1.21622 0.95896 1.00369 0.96249 1.19068 0.96757 0.93974 0.91766 1.21225 1.01381 1.25386 1.07605 0.92771 1.25022 0.95954 0.95614 0.97897 1.69959 1.28097 1.28109 1.27521 0.86670 0.83155 0.77830 0.80411 1.20288 1.21337 1.20235 0.92146 0.94712 0.91637 0.92083 0.92543 0.92011 0.92638 0.92329 0.91779 0.92167 0.92696 0.91974 0.92298 0.91172 0.91935 0.95757 0.91567 0.95392 0.93567 0.92725 0.96699 0.96947 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 7.98 37.16 0.30 -1.24 16 2 C -0.08 -0.87 1.43 -91.46 -0.13 -1.00 16 3 H 0.06 0.63 6.46 -51.93 -0.34 0.30 16 4 C -0.11 -1.04 5.20 -25.75 -0.13 -1.18 16 5 C -0.12 -1.09 5.31 -27.43 -0.15 -1.23 16 6 C -0.12 -1.04 5.61 -27.34 -0.15 -1.19 16 7 C -0.11 -1.16 5.26 -29.60 -0.16 -1.31 16 8 C -0.15 -1.73 3.42 -29.60 -0.10 -1.83 16 9 C 0.09 1.14 1.65 -68.33 -0.11 1.03 16 10 H 0.08 1.07 6.71 -51.93 -0.35 0.73 16 11 N -0.53 -7.84 3.40 -235.63 -0.80 -8.64 16 12 C 0.02 0.28 7.15 60.07 0.43 0.71 16 13 C 0.06 0.98 4.66 -3.82 -0.02 0.96 16 14 C -0.10 -2.20 5.08 -26.73 -0.14 -2.33 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 25 H 0.03 0.36 8.11 -51.93 -0.42 -0.07 16 26 H 0.06 0.81 5.41 -51.93 -0.28 0.53 16 27 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.60 6.64 -51.93 -0.34 0.26 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.58 6.98 -51.93 -0.36 0.21 16 33 H 0.06 0.64 7.47 -51.93 -0.39 0.25 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 36 H 0.06 0.67 7.07 -51.93 -0.37 0.30 16 37 H 0.07 1.03 6.84 -51.93 -0.36 0.67 16 38 H 0.06 0.75 5.88 -51.93 -0.31 0.44 16 39 H 0.02 0.33 7.02 -51.93 -0.36 -0.03 16 40 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 41 H 0.03 0.51 6.83 -51.93 -0.35 0.15 16 42 H 0.05 0.97 6.72 -51.93 -0.35 0.62 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -29.46 331.33 -9.65 -39.12 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.65 Total: -3.83 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.91 Total: -21.94 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.07 Total: -35.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.46 -9.65 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691108159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.492 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds