Wall clock time and date at job start Mon Mar 30 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 108.77289 * 2 1 4 4 C 1.53821 * 108.92828 * 118.29611 * 2 1 3 5 5 C 1.54068 * 112.88519 * 162.33518 * 4 2 1 6 6 C 1.50477 * 112.50104 * 41.86797 * 5 4 2 7 7 C 1.54240 * 108.52285 * 265.85027 * 6 5 4 8 8 C 1.45546 * 112.40288 * 79.98349 * 7 6 5 9 9 C 1.50466 * 108.87850 * 241.48009 * 2 1 3 10 10 H 1.08996 * 109.63510 * 264.97383 * 9 2 1 11 11 N 1.46902 * 109.62673 * 25.36446 * 9 2 1 12 12 C 1.46905 * 111.00141 * 69.95441 * 11 9 2 13 13 C 1.46909 * 110.99871 * 193.90416 * 11 9 2 14 14 C 1.53004 * 109.46654 * 169.99996 * 13 11 9 15 15 C 1.52999 * 109.46600 * 179.97438 * 14 13 11 16 16 C 1.50704 * 109.46919 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99749 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99828 * 180.27622 * 16 15 14 19 19 N 1.31516 * 120.00154 * 359.72587 * 18 16 15 20 20 Si 1.86800 * 119.99841 * 179.72811 * 18 16 15 21 21 H 1.48500 * 109.47255 * 59.99856 * 20 18 16 22 22 H 1.48508 * 109.47090 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47032 * 299.99812 * 20 18 16 24 24 H 1.08999 * 109.46747 * 171.98949 * 1 2 3 25 25 H 1.09000 * 109.46814 * 291.98459 * 1 2 3 26 26 H 1.08992 * 109.46641 * 51.98838 * 1 2 3 27 27 H 1.08994 * 108.66084 * 41.53963 * 4 2 1 28 28 H 1.08999 * 108.80672 * 283.23595 * 4 2 1 29 29 H 1.08998 * 108.87990 * 281.08515 * 5 4 2 30 30 H 1.09007 * 108.79776 * 162.58800 * 5 4 2 31 31 H 1.08995 * 109.62770 * 146.13416 * 6 5 4 32 32 H 1.09004 * 109.62576 * 25.55864 * 6 5 4 33 33 H 1.08999 * 108.89478 * 319.23006 * 7 6 5 34 34 H 1.08994 * 108.89208 * 200.73595 * 7 6 5 35 35 H 1.08999 * 108.88917 * 177.31045 * 8 7 6 36 36 H 1.08995 * 108.82069 * 58.76417 * 8 7 6 37 37 H 1.08993 * 109.47036 * 191.32023 * 12 11 9 38 38 H 1.09001 * 109.46863 * 311.32094 * 12 11 9 39 39 H 1.08999 * 109.47161 * 71.31483 * 12 11 9 40 40 H 1.08993 * 109.46634 * 50.00149 * 13 11 9 41 41 H 1.08996 * 109.47040 * 289.99522 * 13 11 9 42 42 H 1.09000 * 109.46853 * 60.00501 * 14 13 11 43 43 H 1.08998 * 109.47225 * 300.00288 * 14 13 11 44 44 H 1.09003 * 109.47396 * 60.00235 * 15 14 13 45 45 H 1.08998 * 109.47581 * 300.00087 * 15 14 13 46 46 H 0.96998 * 119.99816 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8808 1.0320 0.0000 4 6 2.0290 -0.6897 1.2812 5 6 3.5027 -1.1297 1.1897 6 6 4.3734 -0.0933 0.5323 7 6 4.4796 -0.4242 -0.9704 8 6 3.3116 0.0156 -1.7192 9 6 2.0169 -0.6798 -1.2510 10 1 2.2205 -1.7299 -1.0416 11 7 0.9935 -0.5750 -2.2996 12 6 0.8707 0.8081 -2.7792 13 6 1.2813 -1.4934 -3.4096 14 6 0.0800 -1.5415 -4.3561 15 6 0.3800 -2.4975 -5.5124 16 6 -0.8034 -2.5454 -6.4443 17 1 -1.6813 -1.9530 -6.2332 18 6 -0.7671 -3.3496 -7.5637 19 7 0.3022 -4.0707 -7.8210 20 14 -2.2369 -3.4148 -8.7148 21 1 -2.5021 -2.0578 -9.2563 22 1 -1.9481 -4.3473 -9.8339 23 1 -3.4290 -3.8918 -7.9688 24 1 -0.3633 -1.0176 -0.1432 25 1 -0.3633 0.3847 0.9530 26 1 -0.3632 0.6328 -0.8096 27 1 1.4110 -1.5679 1.4678 28 1 1.9195 0.0008 2.1174 29 1 3.5598 -2.0541 0.6151 30 1 3.8764 -1.3170 2.1964 31 1 5.3660 -0.1103 0.9821 32 1 3.9276 0.8933 0.6594 33 1 4.5885 -1.5024 -1.0875 34 1 5.3646 0.0644 -1.3777 35 1 3.4671 -0.2024 -2.7758 36 1 3.1989 1.0925 -1.5942 37 1 -0.0194 0.8991 -3.4016 38 1 0.7884 1.4822 -1.9266 39 1 1.7520 1.0691 -3.3650 40 1 1.4732 -2.4911 -3.0151 41 1 2.1584 -1.1426 -3.9533 42 1 -0.1119 -0.5437 -4.7505 43 1 -0.7971 -1.8922 -3.8123 44 1 0.5723 -3.4954 -5.1183 45 1 1.2571 -2.1464 -6.0560 46 1 0.3275 -4.6367 -8.6083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691108159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:31 Heat of formation + Delta-G solvation = -42.658331 kcal Electronic energy + Delta-G solvation = -19848.880025 eV Core-core repulsion = 17157.530349 eV Total energy + Delta-G solvation = -2691.349676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05418 -37.64859 -35.65847 -34.53397 -33.47949 -31.55452 -28.82078 -28.32497 -26.88166 -25.36214 -23.63688 -23.26769 -21.74768 -20.97504 -19.53877 -18.47865 -17.11820 -16.56550 -16.44285 -16.06263 -15.87296 -15.30460 -15.01162 -14.71913 -14.33881 -14.31281 -13.70395 -13.68756 -13.40331 -13.32277 -13.06599 -12.74370 -12.62056 -12.51684 -12.39757 -12.23543 -12.16007 -11.84945 -11.66091 -11.44905 -11.37990 -11.36636 -11.27391 -11.08367 -11.01488 -10.85907 -10.54667 -9.09498 -8.19991 -6.31303 1.39495 1.43060 1.50959 2.40976 3.05090 3.12881 3.61447 3.75309 4.06067 4.16585 4.17698 4.20071 4.31146 4.34851 4.46830 4.49701 4.51922 4.58703 4.68050 4.75030 4.85673 4.90063 4.94377 4.96297 5.00332 5.07114 5.13302 5.16103 5.18739 5.25169 5.28687 5.31539 5.35741 5.41472 5.41858 5.52338 5.54786 5.61390 5.71410 5.75118 5.85806 6.17465 6.27798 6.32746 6.85244 7.37902 8.91851 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036262 B = 0.004018 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.977363 B = 6967.540793 C = 7284.145938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 H 0.069 0.931 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.141 4.141 9 C 0.092 3.908 10 H 0.068 0.932 11 N -0.532 5.532 12 C 0.022 3.978 13 C 0.069 3.931 14 C -0.087 4.087 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.267 1.267 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.049 0.951 43 H 0.050 0.950 44 H -0.010 1.010 45 H -0.012 1.012 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 10.389 19.125 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.180 4.180 9 C -0.016 4.016 10 H 0.087 0.913 11 N -0.254 5.254 12 C -0.125 4.125 13 C -0.059 4.059 14 C -0.125 4.125 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.192 1.192 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.008 0.992 45 H 0.006 0.994 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.926 10.131 19.211 22.512 hybrid contribution 0.285 -0.289 -1.500 1.554 sum 6.211 9.842 17.711 21.192 Atomic orbital electron populations 1.21716 0.94690 1.01701 1.00529 1.20845 0.96284 0.99276 0.92993 0.91274 1.21886 0.95616 1.00346 0.96606 1.21364 0.94756 0.98626 1.01024 1.21304 1.00009 0.99539 0.93946 1.20420 0.97484 1.00972 0.96371 1.21078 0.96430 1.01189 0.99292 1.21533 0.88668 0.99658 0.91764 0.91348 1.62407 1.45783 1.06440 1.10810 1.22471 1.00322 0.89412 1.00337 1.22005 0.96334 0.96094 0.91477 1.21357 0.97140 0.98886 0.95081 1.18967 0.95309 0.93783 0.93070 1.21659 1.02175 1.25790 1.08509 0.92304 1.25995 0.99169 0.94952 0.99713 1.70097 1.30350 1.28744 1.28266 0.85494 0.79179 0.78352 0.77988 1.19114 1.20713 1.19156 0.94006 0.93084 0.92443 0.92660 0.90991 0.93185 0.91206 0.91011 0.91284 0.93041 0.92047 0.94158 0.91424 0.92248 0.89607 0.95921 0.92233 0.95997 0.93240 0.93129 0.99204 0.99375 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.98 71.98 0.57 -2.21 16 2 C -0.08 -1.49 1.43 -11.34 -0.02 -1.50 16 3 H 0.07 1.27 6.46 -2.39 -0.02 1.25 16 4 C -0.11 -1.79 5.20 31.23 0.16 -1.63 16 5 C -0.12 -1.92 5.31 30.14 0.16 -1.76 16 6 C -0.11 -1.70 5.61 30.20 0.17 -1.53 16 7 C -0.11 -2.19 5.26 28.74 0.15 -2.03 16 8 C -0.14 -3.16 3.42 28.74 0.10 -3.06 16 9 C 0.09 2.24 1.65 44.52 0.07 2.31 16 10 H 0.07 1.84 6.71 -2.39 -0.02 1.82 16 11 N -0.53 -15.64 3.40 -899.38 -3.06 -18.70 16 12 C 0.02 0.59 7.15 127.69 0.91 1.51 16 13 C 0.07 2.51 4.66 86.30 0.40 2.91 16 14 C -0.09 -3.77 5.08 30.60 0.16 -3.62 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 17 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 20 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 25 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 26 H 0.06 1.32 5.41 -2.39 -0.01 1.31 16 27 H 0.05 1.00 7.97 -2.39 -0.02 0.98 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.92 6.64 -2.39 -0.02 0.90 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.02 6.98 -2.39 -0.02 1.00 16 33 H 0.05 1.07 7.47 -2.39 -0.02 1.05 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.08 6.34 -2.39 -0.02 1.06 16 36 H 0.07 1.40 7.07 -2.39 -0.02 1.38 16 37 H 0.06 1.70 6.84 -2.39 -0.02 1.69 16 38 H 0.09 1.87 5.88 -2.39 -0.01 1.86 16 39 H 0.02 0.61 7.02 -2.39 -0.02 0.59 16 40 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 41 H 0.02 0.82 6.83 -2.39 -0.02 0.80 16 42 H 0.05 2.10 6.72 -2.39 -0.02 2.08 16 43 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -63.58 331.33 3.85 -59.74 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.91 Total: 10.02 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.69 Total: -40.35 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -2.78 Total: -76.59 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.58 3.85 -59.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691108159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.079 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds