Wall clock time and date at job start Mon Mar 30 2020 07:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47090 * 239.99903 * 2 1 3 5 5 C 1.53008 * 109.46997 * 175.00160 * 4 2 1 6 6 C 1.53006 * 109.46996 * 179.97438 * 5 4 2 7 7 C 1.52994 * 117.49637 * 243.62117 * 6 5 4 8 8 C 1.52997 * 117.49804 * 174.99863 * 6 5 4 9 9 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 10 10 C 1.46901 * 110.99793 * 58.95599 * 9 2 1 11 11 C 1.46898 * 110.99820 * 294.99916 * 9 2 1 12 12 C 1.53004 * 109.46619 * 189.99887 * 11 9 2 13 13 C 1.52999 * 109.46881 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47337 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47282 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99776 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00258 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47095 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47326 * 119.99719 * 19 17 15 22 22 H 1.48501 * 109.46691 * 239.99537 * 19 17 15 23 23 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 24 24 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 26 26 H 1.08997 * 109.47414 * 294.99906 * 4 2 1 27 27 H 1.08999 * 109.47252 * 55.00058 * 4 2 1 28 28 H 1.08993 * 109.47081 * 299.99652 * 5 4 2 29 29 H 1.08999 * 109.47203 * 59.99868 * 5 4 2 30 30 H 1.09000 * 115.54583 * 29.32968 * 6 5 4 31 31 H 1.08998 * 117.50289 * 359.97438 * 7 6 5 32 32 H 1.09004 * 117.49439 * 145.02280 * 7 6 5 33 33 H 1.08999 * 117.49776 * 214.98405 * 8 6 5 34 34 H 1.09007 * 117.49826 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.47401 * 59.99808 * 10 9 2 36 36 H 1.09001 * 109.46874 * 299.99821 * 10 9 2 37 37 H 1.09004 * 109.46970 * 179.97438 * 10 9 2 38 38 H 1.08994 * 109.47410 * 309.99936 * 11 9 2 39 39 H 1.08999 * 109.47216 * 70.00266 * 11 9 2 40 40 H 1.08994 * 109.47270 * 300.00135 * 12 11 9 41 41 H 1.08999 * 109.47017 * 60.00257 * 12 11 9 42 42 H 1.09005 * 109.47573 * 300.00357 * 13 12 11 43 43 H 1.08999 * 109.47126 * 60.00273 * 13 12 11 44 44 H 1.09006 * 109.46708 * 299.99789 * 14 13 12 45 45 H 1.08999 * 109.46968 * 59.99958 * 14 13 12 46 46 H 0.97000 * 120.00040 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3352 -2.5625 7 6 4.9766 -2.5537 -2.3554 8 6 5.5705 -1.2414 -2.8713 9 7 2.0197 -0.6925 1.1995 10 6 1.5283 -2.0761 1.2460 11 6 1.6487 0.0392 2.4181 12 6 2.3789 -0.5662 3.6186 13 6 1.9920 0.1954 4.8879 14 6 2.7226 -0.4095 6.0884 15 6 2.3411 0.3403 7.3387 16 1 1.6473 1.1660 7.2826 17 6 2.8787 -0.0272 8.5540 18 7 3.7239 -1.0324 8.6221 19 14 2.4063 0.9027 10.1037 20 1 1.4469 1.9828 9.7598 21 1 1.7745 -0.0324 11.0689 22 1 3.6225 1.4972 10.7142 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7517 -1.7715 -1.2056 27 1 1.6054 -0.2618 -2.1369 28 1 3.8532 0.4369 -1.3573 29 1 3.9995 -1.0728 -0.4259 30 1 3.3868 -1.3556 -3.4076 31 1 5.2068 -2.8409 -1.3295 32 1 4.8817 -3.3762 -3.0643 33 1 5.8663 -1.2006 -3.9196 34 1 6.1910 -0.6652 -2.1850 35 1 1.8762 -2.6151 0.3647 36 1 0.4384 -2.0742 1.2639 37 1 1.9060 -2.5658 2.1436 38 1 1.9297 1.0870 2.3125 39 1 0.5722 -0.0345 2.5726 40 1 2.0978 -1.6140 3.7242 41 1 3.4553 -0.4926 3.4641 42 1 2.2727 1.2434 4.7826 43 1 0.9156 0.1213 5.0422 44 1 2.4422 -1.4576 6.1939 45 1 3.7990 -0.3351 5.9338 46 1 4.1018 -1.2912 9.4772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691652790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:26 Heat of formation + Delta-G solvation = -22.895354 kcal Electronic energy + Delta-G solvation = -18721.753416 eV Core-core repulsion = 16031.260728 eV Total energy + Delta-G solvation = -2690.492689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95774 -38.26082 -36.49212 -34.68944 -33.07149 -30.63946 -29.90360 -27.55153 -26.07037 -24.97073 -23.19135 -22.72579 -21.60377 -21.17093 -20.32707 -18.43396 -17.27426 -16.57617 -16.52171 -16.39589 -15.74232 -15.39615 -14.96885 -14.60074 -14.51657 -14.35023 -13.73920 -13.65206 -13.38953 -13.10053 -12.96163 -12.79498 -12.55892 -12.38183 -12.36268 -12.22158 -12.15403 -12.04755 -11.94139 -11.75189 -11.47414 -11.31873 -11.23457 -11.00930 -10.86826 -10.64667 -10.56285 -9.11431 -8.20148 -6.31717 1.39097 1.39711 1.53247 2.40584 2.97242 3.03342 3.12467 3.69353 4.00887 4.08124 4.09451 4.15079 4.18769 4.29433 4.41195 4.45726 4.49444 4.59149 4.59638 4.65933 4.71693 4.82303 4.85517 4.86719 4.89666 4.95363 4.99401 5.08555 5.11486 5.18304 5.24414 5.26655 5.28504 5.29948 5.32617 5.39335 5.47637 5.56043 5.63528 5.77947 5.86834 6.20283 6.24994 6.30530 6.86005 7.37658 8.92005 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.003202 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.458895 B = 8741.979823 C = 9334.018961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.077 3.923 3 H 0.078 0.922 4 C -0.100 4.100 5 C -0.080 4.080 6 C -0.152 4.152 7 C -0.187 4.187 8 C -0.186 4.186 9 N -0.541 5.541 10 C 0.017 3.983 11 C 0.067 3.933 12 C -0.102 4.102 13 C -0.096 4.096 14 C 0.024 3.976 15 C -0.544 4.544 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.048 0.952 44 H -0.012 1.012 45 H -0.012 1.012 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 0.108 -24.407 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.031 4.031 3 H 0.096 0.904 4 C -0.137 4.137 5 C -0.117 4.117 6 C -0.170 4.170 7 C -0.224 4.224 8 C -0.223 4.223 9 N -0.264 5.264 10 C -0.131 4.131 11 C -0.061 4.061 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.013 4.013 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.006 0.994 45 H 0.007 0.993 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.081 0.001 -24.329 24.524 hybrid contribution -0.720 0.128 1.273 1.468 sum -3.801 0.129 -23.056 23.368 Atomic orbital electron populations 1.22424 0.97061 1.02268 1.02440 1.21831 0.92982 0.98254 0.90061 0.90358 1.21592 0.95260 1.00725 0.96145 1.21033 0.95594 0.99577 0.95499 1.22428 0.93096 1.01274 1.00202 1.23061 1.04985 0.92129 1.02227 1.23012 0.96197 1.00895 1.02221 1.62201 1.59671 1.02660 1.01904 1.22490 0.98041 0.89950 1.02623 1.22002 0.97214 0.97861 0.89040 1.21489 1.00060 0.99089 0.93397 1.21397 0.99215 0.98866 0.93940 1.19012 0.94371 0.94730 0.93208 1.21770 1.26442 1.16269 0.93673 0.92219 1.26031 0.94937 0.96124 1.03001 1.70114 1.31777 1.29213 1.26406 0.85376 0.78317 0.78648 0.78566 1.18532 1.20265 1.20280 0.90733 0.92310 0.93360 0.91660 0.90347 0.92340 0.92417 0.87150 0.89683 0.88206 0.87970 0.89422 0.90169 0.94999 0.92523 0.90909 0.94714 0.93049 0.92941 0.93115 0.93301 0.99358 0.99331 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.50 71.98 0.61 -2.60 16 2 C 0.08 1.49 2.34 44.91 0.11 1.59 16 3 H 0.08 1.56 8.03 -2.39 -0.02 1.54 16 4 C -0.10 -1.62 4.46 30.60 0.14 -1.48 16 5 C -0.08 -1.45 5.38 30.60 0.16 -1.28 16 6 C -0.15 -2.42 5.74 -10.79 -0.06 -2.48 16 7 C -0.19 -3.07 10.18 30.59 0.31 -2.76 16 8 C -0.19 -2.94 10.25 30.59 0.31 -2.62 16 9 N -0.54 -13.21 4.20 -897.04 -3.77 -16.98 16 10 C 0.02 0.39 8.63 127.69 1.10 1.49 16 11 C 0.07 1.88 4.40 86.30 0.38 2.26 16 12 C -0.10 -3.63 5.15 30.60 0.16 -3.48 16 13 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 14 C 0.02 1.32 4.97 29.85 0.15 1.46 16 15 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 19 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.03 6.38 -2.39 -0.02 1.01 16 25 H 0.05 0.95 6.75 -2.39 -0.02 0.93 16 26 H 0.06 1.08 6.17 -2.39 -0.01 1.06 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.30 7.48 -2.39 -0.02 1.29 16 30 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 32 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.08 1.61 6.22 -2.39 -0.01 1.59 16 36 H 0.03 0.69 6.28 -2.39 -0.01 0.68 16 37 H 0.06 1.48 6.30 -2.38 -0.02 1.46 16 38 H 0.07 2.00 8.00 -2.39 -0.02 1.98 16 39 H 0.03 0.96 6.94 -2.39 -0.02 0.95 16 40 H 0.05 1.85 6.47 -2.39 -0.02 1.84 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 44 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 45 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 46 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -64.40 354.82 3.66 -60.74 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.90 Total: 12.52 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.22 Total: -45.34 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -3.49 Total: -75.12 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.40 3.66 -60.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691652790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.847 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds