Wall clock time and date at job start Mon Mar 30 2020 07:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.53000 * 109.47283 * 184.99862 * 4 2 1 6 6 C 1.52999 * 109.47277 * 179.97438 * 5 4 2 7 7 C 1.52992 * 117.50075 * 243.74718 * 6 5 4 8 8 C 1.53001 * 117.49653 * 175.08537 * 6 5 4 9 9 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 10 10 C 1.46901 * 111.00443 * 306.04832 * 9 2 1 11 11 C 1.46906 * 110.99820 * 70.00145 * 9 2 1 12 12 C 1.52996 * 109.47022 * 169.99926 * 11 9 2 13 13 C 1.53007 * 109.46799 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46794 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47005 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99976 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00275 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99768 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00207 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46889 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46887 * 120.00179 * 19 17 15 22 22 H 1.48497 * 109.47332 * 240.00066 * 19 17 15 23 23 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 24 24 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 26 26 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 27 27 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 28 28 H 1.08998 * 109.46763 * 300.00343 * 5 4 2 29 29 H 1.09004 * 109.46807 * 59.99555 * 5 4 2 30 30 H 1.09001 * 115.54698 * 29.42215 * 6 5 4 31 31 H 1.09010 * 117.50269 * 0.02562 * 7 6 5 32 32 H 1.09002 * 117.50161 * 145.02328 * 7 6 5 33 33 H 1.08997 * 117.49691 * 214.97997 * 8 6 5 34 34 H 1.09001 * 117.49944 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47401 * 183.95136 * 10 9 2 36 36 H 1.09001 * 109.46874 * 63.95149 * 10 9 2 37 37 H 1.09004 * 109.46970 * 303.95282 * 10 9 2 38 38 H 1.08997 * 109.46995 * 289.99871 * 11 9 2 39 39 H 1.09001 * 109.46848 * 49.99877 * 11 9 2 40 40 H 1.08997 * 109.47190 * 299.99825 * 12 11 9 41 41 H 1.09001 * 109.47349 * 60.00258 * 12 11 9 42 42 H 1.08997 * 109.46999 * 299.99810 * 13 12 11 43 43 H 1.08997 * 109.47321 * 60.00382 * 13 12 11 44 44 H 1.08997 * 109.47163 * 299.99673 * 14 13 12 45 45 H 1.09001 * 109.47382 * 60.00109 * 14 13 12 46 46 H 0.96998 * 119.99904 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3137 6 6 4.0749 -1.3342 2.5632 7 6 4.7741 -0.4895 3.6300 8 6 5.5899 -1.4392 2.7492 9 7 2.0196 -0.6926 -1.1994 10 6 1.4343 -2.0355 -1.3078 11 6 1.7529 0.0972 -2.4090 12 6 2.4884 -0.5257 -3.5972 13 6 2.2110 0.2972 -4.8570 14 6 2.9460 -0.3261 -6.0454 15 6 2.6724 0.4840 -7.2863 16 1 2.0380 1.3565 -7.2326 17 6 3.2326 0.1121 -8.4899 18 7 4.0055 -0.9500 -8.5552 19 14 2.8940 1.1167 -10.0279 20 1 2.0012 2.2542 -9.6895 21 1 4.1744 1.6375 -10.5708 22 1 2.2377 0.2576 -11.0459 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.6054 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4369 1.3573 30 1 3.4667 -2.1723 2.9035 31 1 4.8706 0.5799 3.4420 32 1 4.6264 -0.7720 4.6724 33 1 5.9783 -2.3461 3.2124 34 1 6.2233 -0.9944 1.9817 35 1 1.8663 -2.5522 -2.1648 36 1 0.3555 -1.9520 -1.4399 37 1 1.6466 -2.5988 -0.3991 38 1 0.6814 0.1052 -2.6087 39 1 2.1025 1.1188 -2.2603 40 1 3.5599 -0.5338 -3.3976 41 1 2.1387 -1.5474 -3.7460 42 1 1.1395 0.3057 -5.0568 43 1 2.5610 1.3187 -4.7081 44 1 4.0175 -0.3349 -5.8458 45 1 2.5957 -1.3475 -6.1942 46 1 4.3994 -1.2119 -9.4021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691652792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:31 Heat of formation + Delta-G solvation = -8.591742 kcal Electronic energy + Delta-G solvation = -18665.565781 eV Core-core repulsion = 15975.693343 eV Total energy + Delta-G solvation = -2689.872438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.99746 -37.50578 -34.83582 -32.99153 -31.63569 -29.66336 -28.36606 -26.27542 -24.80730 -23.66262 -22.53401 -21.17846 -20.47800 -19.94294 -19.43448 -16.32782 -16.13939 -15.79257 -15.19496 -14.85915 -14.42719 -14.29021 -14.03245 -13.70783 -13.29078 -12.82898 -12.52123 -12.14957 -11.98066 -11.80465 -11.72025 -11.66428 -11.57832 -11.36777 -11.24535 -11.01054 -10.92145 -10.66013 -10.43172 -10.39579 -10.29495 -10.20826 -9.94589 -9.55904 -9.21164 -8.95197 -8.30225 -8.12439 -5.95137 -3.97078 3.33445 3.40653 3.45029 3.65204 4.02900 4.40535 4.50052 4.76294 4.79875 4.89691 4.95438 5.15419 5.20984 5.33337 5.37862 5.40379 5.44424 5.45650 5.58701 5.62296 5.64899 5.68523 5.74658 5.81353 5.84839 5.93631 5.95585 6.00283 6.09547 6.12934 6.22392 6.24382 6.35299 6.39412 6.59208 6.88149 7.03633 7.15919 7.24009 7.33459 7.74906 7.91201 8.06577 8.49547 9.10790 9.66635 11.16279 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029167 B = 0.003142 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.751413 B = 8910.131950 C = 9455.712074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.079 0.921 4 C -0.105 4.105 5 C -0.083 4.083 6 C -0.150 4.150 7 C -0.186 4.186 8 C -0.183 4.183 9 N -0.532 5.532 10 C 0.017 3.983 11 C 0.056 3.944 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -0.521 23.363 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.097 0.903 4 C -0.143 4.143 5 C -0.120 4.120 6 C -0.168 4.168 7 C -0.223 4.223 8 C -0.220 4.220 9 N -0.256 5.256 10 C -0.131 4.131 11 C -0.072 4.072 12 C -0.151 4.151 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.789 -0.670 23.288 23.464 hybrid contribution -1.038 0.557 -0.975 1.530 sum -3.827 -0.113 22.313 22.639 Atomic orbital electron populations 1.22472 0.97865 1.02187 1.02042 1.21762 0.92345 0.98314 0.90738 0.90269 1.21612 0.95814 1.00641 0.96227 1.21107 0.95173 0.99620 0.96115 1.22419 0.94598 1.01613 0.98145 1.23037 1.05470 0.97594 0.96179 1.22965 0.94318 1.01531 1.03206 1.62240 1.58162 1.02914 1.02244 1.22486 0.97179 0.91032 1.02448 1.22244 0.98143 0.97164 0.89629 1.21661 1.00438 0.99426 0.93569 1.21596 0.99993 0.98432 0.94693 1.19089 0.95419 0.95880 0.91194 1.21336 1.29315 1.11581 0.93445 0.92759 1.25039 0.95283 0.95223 0.99046 1.69982 1.32731 1.25170 1.25699 0.86564 0.78011 0.80260 0.83331 1.19786 1.21031 1.21058 0.92450 0.92265 0.92423 0.92069 0.91853 0.89990 0.92310 0.88265 0.88941 0.89338 0.89162 0.88702 0.90919 0.95563 0.91689 0.95133 0.91304 0.91794 0.92629 0.93809 0.93552 0.96628 0.96780 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 8.44 37.16 0.31 -1.52 16 2 C 0.08 0.81 2.31 -67.71 -0.16 0.66 16 3 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 4 C -0.11 -0.97 4.57 -26.73 -0.12 -1.09 16 5 C -0.08 -0.81 5.38 -26.73 -0.14 -0.95 16 6 C -0.15 -1.32 5.73 -90.62 -0.52 -1.84 16 7 C -0.19 -1.51 10.18 -26.70 -0.27 -1.78 16 8 C -0.18 -1.58 10.26 -26.69 -0.27 -1.86 16 9 N -0.53 -6.73 4.17 -234.88 -0.98 -7.71 16 10 C 0.02 0.20 8.44 60.07 0.51 0.70 16 11 C 0.06 0.80 4.53 -3.82 -0.02 0.79 16 12 C -0.11 -1.98 5.14 -26.73 -0.14 -2.12 16 13 C -0.11 -2.30 5.15 -26.72 -0.14 -2.44 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H 0.06 0.61 6.91 -51.93 -0.36 0.26 16 24 H 0.06 0.58 6.42 -51.93 -0.33 0.24 16 25 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 28 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 29 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 30 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.09 0.74 8.03 -51.92 -0.42 0.32 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.94 6.47 -51.93 -0.34 0.61 16 36 H 0.03 0.30 6.46 -51.93 -0.34 -0.03 16 37 H 0.06 0.68 6.21 -51.93 -0.32 0.36 16 38 H 0.03 0.44 7.06 -51.93 -0.37 0.08 16 39 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.98 6.55 -51.93 -0.34 0.64 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -29.98 355.39 -10.37 -40.35 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.96 Total: -3.32 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -1.51 Total: -24.91 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.24 Total: -34.50 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.98 -10.37 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691652792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.761 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds